data_5QG7 # _model_server_result.job_id BzjJEEceGxleqaQaGrfxoQ _model_server_result.datetime_utc '2024-11-12 21:38:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QG7 # _exptl.entry_id 5QG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QG7 _cell.length_a 89.957 _cell.length_b 89.957 _cell.length_c 106.594 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 370 n n C C2 TRS sing 371 n n C C3 TRS sing 372 n n C N TRS sing 373 n n C1 O1 TRS sing 374 n n C1 H11 TRS sing 375 n n C1 H12 TRS sing 376 n n C2 O2 TRS sing 377 n n C2 H21 TRS sing 378 n n C2 H22 TRS sing 379 n n C3 O3 TRS sing 380 n n C3 H31 TRS sing 381 n n C3 H32 TRS sing 382 n n N HN1 TRS sing 383 n n N HN2 TRS sing 384 n n N HN3 TRS sing 385 n n O1 HO1 TRS sing 386 n n O2 HO2 TRS sing 387 n n O3 HO3 TRS sing 388 n n # _atom_sites.entry_id 5QG7 _atom_sites.fract_transf_matrix[1][1] 0.011116 _atom_sites.fract_transf_matrix[1][2] 0.006418 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009381 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JKJ A 1 401 1 JKJ LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 181 HOH HOH . D 4 HOH A 2 502 112 HOH HOH . D 4 HOH A 3 503 82 HOH HOH . D 4 HOH A 4 504 160 HOH HOH . D 4 HOH A 5 505 256 HOH HOH . D 4 HOH A 6 506 224 HOH HOH . D 4 HOH A 7 507 203 HOH HOH . D 4 HOH A 8 508 134 HOH HOH . D 4 HOH A 9 509 68 HOH HOH . D 4 HOH A 10 510 220 HOH HOH . D 4 HOH A 11 511 150 HOH HOH . D 4 HOH A 12 512 162 HOH HOH . D 4 HOH A 13 513 39 HOH HOH . D 4 HOH A 14 514 240 HOH HOH . D 4 HOH A 15 515 149 HOH HOH . D 4 HOH A 16 516 190 HOH HOH . D 4 HOH A 17 517 232 HOH HOH . D 4 HOH A 18 518 120 HOH HOH . D 4 HOH A 19 519 146 HOH HOH . D 4 HOH A 20 520 71 HOH HOH . D 4 HOH A 21 521 57 HOH HOH . D 4 HOH A 22 522 113 HOH HOH . D 4 HOH A 23 523 32 HOH HOH . D 4 HOH A 24 524 30 HOH HOH . D 4 HOH A 25 525 247 HOH HOH . D 4 HOH A 26 526 179 HOH HOH . D 4 HOH A 27 527 21 HOH HOH . D 4 HOH A 28 528 61 HOH HOH . D 4 HOH A 29 529 139 HOH HOH . D 4 HOH A 30 530 85 HOH HOH . D 4 HOH A 31 531 43 HOH HOH . D 4 HOH A 32 532 169 HOH HOH . D 4 HOH A 33 533 89 HOH HOH . D 4 HOH A 34 534 11 HOH HOH . D 4 HOH A 35 535 8 HOH HOH . D 4 HOH A 36 536 19 HOH HOH . D 4 HOH A 37 537 75 HOH HOH . D 4 HOH A 38 538 7 HOH HOH . D 4 HOH A 39 539 205 HOH HOH . D 4 HOH A 40 540 98 HOH HOH . D 4 HOH A 41 541 13 HOH HOH . D 4 HOH A 42 542 172 HOH HOH . D 4 HOH A 43 543 115 HOH HOH . D 4 HOH A 44 544 56 HOH HOH . D 4 HOH A 45 545 133 HOH HOH . D 4 HOH A 46 546 58 HOH HOH . D 4 HOH A 47 547 17 HOH HOH . D 4 HOH A 48 548 93 HOH HOH . D 4 HOH A 49 549 4 HOH HOH . D 4 HOH A 50 550 204 HOH HOH . D 4 HOH A 51 551 26 HOH HOH . D 4 HOH A 52 552 108 HOH HOH . D 4 HOH A 53 553 168 HOH HOH . D 4 HOH A 54 554 1 HOH HOH . D 4 HOH A 55 555 76 HOH HOH . D 4 HOH A 56 556 5 HOH HOH . D 4 HOH A 57 557 12 HOH HOH . D 4 HOH A 58 558 186 HOH HOH . D 4 HOH A 59 559 254 HOH HOH . D 4 HOH A 60 560 125 HOH HOH . D 4 HOH A 61 561 54 HOH HOH . D 4 HOH A 62 562 132 HOH HOH . D 4 HOH A 63 563 128 HOH HOH . D 4 HOH A 64 564 212 HOH HOH . D 4 HOH A 65 565 100 HOH HOH . D 4 HOH A 66 566 25 HOH HOH . D 4 HOH A 67 567 183 HOH HOH . D 4 HOH A 68 568 36 HOH HOH . D 4 HOH A 69 569 23 HOH HOH . D 4 HOH A 70 570 119 HOH HOH . D 4 HOH A 71 571 124 HOH HOH . D 4 HOH A 72 572 45 HOH HOH . D 4 HOH A 73 573 37 HOH HOH . D 4 HOH A 74 574 126 HOH HOH . D 4 HOH A 75 575 106 HOH HOH . D 4 HOH A 76 576 31 HOH HOH . D 4 HOH A 77 577 88 HOH HOH . D 4 HOH A 78 578 78 HOH HOH . D 4 HOH A 79 579 42 HOH HOH . D 4 HOH A 80 580 6 HOH HOH . D 4 HOH A 81 581 92 HOH HOH . D 4 HOH A 82 582 90 HOH HOH . D 4 HOH A 83 583 118 HOH HOH . D 4 HOH A 84 584 24 HOH HOH . D 4 HOH A 85 585 27 HOH HOH . D 4 HOH A 86 586 52 HOH HOH . D 4 HOH A 87 587 104 HOH HOH . D 4 HOH A 88 588 41 HOH HOH . D 4 HOH A 89 589 16 HOH HOH . D 4 HOH A 90 590 81 HOH HOH . D 4 HOH A 91 591 66 HOH HOH . D 4 HOH A 92 592 40 HOH HOH . D 4 HOH A 93 593 175 HOH HOH . D 4 HOH A 94 594 110 HOH HOH . D 4 HOH A 95 595 91 HOH HOH . D 4 HOH A 96 596 260 HOH HOH . D 4 HOH A 97 597 9 HOH HOH . D 4 HOH A 98 598 242 HOH HOH . D 4 HOH A 99 599 142 HOH HOH . D 4 HOH A 100 600 200 HOH HOH . D 4 HOH A 101 601 97 HOH HOH . D 4 HOH A 102 602 80 HOH HOH . D 4 HOH A 103 603 44 HOH HOH . D 4 HOH A 104 604 53 HOH HOH . D 4 HOH A 105 605 3 HOH HOH . D 4 HOH A 106 606 135 HOH HOH . D 4 HOH A 107 607 255 HOH HOH . D 4 HOH A 108 608 184 HOH HOH . D 4 HOH A 109 609 95 HOH HOH . D 4 HOH A 110 610 67 HOH HOH . D 4 HOH A 111 611 22 HOH HOH . D 4 HOH A 112 612 152 HOH HOH . D 4 HOH A 113 613 10 HOH HOH . D 4 HOH A 114 614 148 HOH HOH . D 4 HOH A 115 615 225 HOH HOH . D 4 HOH A 116 616 64 HOH HOH . D 4 HOH A 117 617 185 HOH HOH . D 4 HOH A 118 618 2 HOH HOH . D 4 HOH A 119 619 77 HOH HOH . D 4 HOH A 120 620 14 HOH HOH . D 4 HOH A 121 621 60 HOH HOH . D 4 HOH A 122 622 18 HOH HOH . D 4 HOH A 123 623 121 HOH HOH . D 4 HOH A 124 624 238 HOH HOH . D 4 HOH A 125 625 233 HOH HOH . D 4 HOH A 126 626 130 HOH HOH . D 4 HOH A 127 627 55 HOH HOH . D 4 HOH A 128 628 33 HOH HOH . D 4 HOH A 129 629 140 HOH HOH . D 4 HOH A 130 630 173 HOH HOH . D 4 HOH A 131 631 182 HOH HOH . D 4 HOH A 132 632 74 HOH HOH . D 4 HOH A 133 633 151 HOH HOH . D 4 HOH A 134 634 189 HOH HOH . D 4 HOH A 135 635 20 HOH HOH . D 4 HOH A 136 636 154 HOH HOH . D 4 HOH A 137 637 48 HOH HOH . D 4 HOH A 138 638 109 HOH HOH . D 4 HOH A 139 639 246 HOH HOH . D 4 HOH A 140 640 35 HOH HOH . D 4 HOH A 141 641 87 HOH HOH . D 4 HOH A 142 642 101 HOH HOH . D 4 HOH A 143 643 147 HOH HOH . D 4 HOH A 144 644 70 HOH HOH . D 4 HOH A 145 645 218 HOH HOH . D 4 HOH A 146 646 155 HOH HOH . D 4 HOH A 147 647 116 HOH HOH . D 4 HOH A 148 648 153 HOH HOH . D 4 HOH A 149 649 107 HOH HOH . D 4 HOH A 150 650 59 HOH HOH . D 4 HOH A 151 651 198 HOH HOH . D 4 HOH A 152 652 47 HOH HOH . D 4 HOH A 153 653 49 HOH HOH . D 4 HOH A 154 654 156 HOH HOH . D 4 HOH A 155 655 15 HOH HOH . D 4 HOH A 156 656 38 HOH HOH . D 4 HOH A 157 657 191 HOH HOH . D 4 HOH A 158 658 195 HOH HOH . D 4 HOH A 159 659 46 HOH HOH . D 4 HOH A 160 660 258 HOH HOH . D 4 HOH A 161 661 145 HOH HOH . D 4 HOH A 162 662 102 HOH HOH . D 4 HOH A 163 663 221 HOH HOH . D 4 HOH A 164 664 111 HOH HOH . D 4 HOH A 165 665 252 HOH HOH . D 4 HOH A 166 666 83 HOH HOH . D 4 HOH A 167 667 144 HOH HOH . D 4 HOH A 168 668 253 HOH HOH . D 4 HOH A 169 669 176 HOH HOH . D 4 HOH A 170 670 51 HOH HOH . D 4 HOH A 171 671 73 HOH HOH . D 4 HOH A 172 672 96 HOH HOH . D 4 HOH A 173 673 28 HOH HOH . D 4 HOH A 174 674 50 HOH HOH . D 4 HOH A 175 675 105 HOH HOH . D 4 HOH A 176 676 129 HOH HOH . D 4 HOH A 177 677 245 HOH HOH . D 4 HOH A 178 678 136 HOH HOH . D 4 HOH A 179 679 236 HOH HOH . D 4 HOH A 180 680 34 HOH HOH . D 4 HOH A 181 681 79 HOH HOH . D 4 HOH A 182 682 226 HOH HOH . D 4 HOH A 183 683 206 HOH HOH . D 4 HOH A 184 684 158 HOH HOH . D 4 HOH A 185 685 137 HOH HOH . D 4 HOH A 186 686 167 HOH HOH . D 4 HOH A 187 687 231 HOH HOH . D 4 HOH A 188 688 213 HOH HOH . D 4 HOH A 189 689 131 HOH HOH . D 4 HOH A 190 690 65 HOH HOH . D 4 HOH A 191 691 250 HOH HOH . D 4 HOH A 192 692 159 HOH HOH . D 4 HOH A 193 693 222 HOH HOH . D 4 HOH A 194 694 227 HOH HOH . D 4 HOH A 195 695 94 HOH HOH . D 4 HOH A 196 696 187 HOH HOH . D 4 HOH A 197 697 188 HOH HOH . D 4 HOH A 198 698 249 HOH HOH . D 4 HOH A 199 699 217 HOH HOH . D 4 HOH A 200 700 161 HOH HOH . D 4 HOH A 201 701 229 HOH HOH . D 4 HOH A 202 702 237 HOH HOH . D 4 HOH A 203 703 235 HOH HOH . D 4 HOH A 204 704 29 HOH HOH . D 4 HOH A 205 705 180 HOH HOH . D 4 HOH A 206 706 243 HOH HOH . D 4 HOH A 207 707 208 HOH HOH . D 4 HOH A 208 708 196 HOH HOH . D 4 HOH A 209 709 209 HOH HOH . D 4 HOH A 210 710 259 HOH HOH . D 4 HOH A 211 711 123 HOH HOH . D 4 HOH A 212 712 99 HOH HOH . D 4 HOH A 213 713 230 HOH HOH . D 4 HOH A 214 714 241 HOH HOH . D 4 HOH A 215 715 122 HOH HOH . D 4 HOH A 216 716 157 HOH HOH . D 4 HOH A 217 717 178 HOH HOH . D 4 HOH A 218 718 69 HOH HOH . D 4 HOH A 219 719 216 HOH HOH . D 4 HOH A 220 720 177 HOH HOH . D 4 HOH A 221 721 239 HOH HOH . D 4 HOH A 222 722 201 HOH HOH . D 4 HOH A 223 723 72 HOH HOH . D 4 HOH A 224 724 207 HOH HOH . D 4 HOH A 225 725 114 HOH HOH . D 4 HOH A 226 726 202 HOH HOH . D 4 HOH A 227 727 251 HOH HOH . D 4 HOH A 228 728 223 HOH HOH . D 4 HOH A 229 729 194 HOH HOH . D 4 HOH A 230 730 192 HOH HOH . D 4 HOH A 231 731 103 HOH HOH . D 4 HOH A 232 732 138 HOH HOH . D 4 HOH A 233 733 257 HOH HOH . D 4 HOH A 234 734 117 HOH HOH . D 4 HOH A 235 735 84 HOH HOH . D 4 HOH A 236 736 62 HOH HOH . D 4 HOH A 237 737 170 HOH HOH . D 4 HOH A 238 738 228 HOH HOH . D 4 HOH A 239 739 219 HOH HOH . D 4 HOH A 240 740 164 HOH HOH . D 4 HOH A 241 741 174 HOH HOH . D 4 HOH A 242 742 141 HOH HOH . D 4 HOH A 243 743 127 HOH HOH . D 4 HOH A 244 744 193 HOH HOH . D 4 HOH A 245 745 210 HOH HOH . D 4 HOH A 246 746 214 HOH HOH . D 4 HOH A 247 747 86 HOH HOH . D 4 HOH A 248 748 234 HOH HOH . D 4 HOH A 249 749 171 HOH HOH . D 4 HOH A 250 750 211 HOH HOH . D 4 HOH A 251 751 248 HOH HOH . D 4 HOH A 252 752 163 HOH HOH . D 4 HOH A 253 753 63 HOH HOH . D 4 HOH A 254 754 197 HOH HOH . D 4 HOH A 255 755 199 HOH HOH . D 4 HOH A 256 756 165 HOH HOH . D 4 HOH A 257 757 244 HOH HOH . D 4 HOH A 258 758 143 HOH HOH . D 4 HOH A 259 759 215 HOH HOH . D 4 HOH A 260 760 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 -43.809 -2.03 -4.91 1 22 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 -44.998 -1.954 -3.96 1 49.37 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 -44.201 -2.523 -6.266 1 90.87 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 -42.735 -2.906 -4.34 1 70.55 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 -43.229 -0.657 -5.044 1 47.42 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 -45.214 -0.619 -3.575 1 58.32 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 -45.246 -1.672 -6.708 1 48.71 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 -42.521 -2.395 -3.089 1 28.17 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 -44.795 -2.558 -3.073 1 59.24 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 -45.89 -2.334 -4.462 1 59.24 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 -44.541 -3.558 -6.192 1 109.04 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 -43.34 -2.469 -6.935 1 109.04 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 -43.054 -3.947 -4.258 1 84.66 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 -41.811 -2.852 -4.918 1 84.66 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 -42.935 -0.315 -4.114 1 56.9 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 -42.411 -0.689 -5.674 1 56.9 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 -43.941 -0.019 -5.435 1 56.9 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 -45.97 -0.575 -2.973 1 69.98 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 -45.538 -1.95 -7.587 1 58.45 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 -43.109 -1.641 -2.944 1 33.81 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 20 #