data_5QGB # _model_server_result.job_id YWgIET3W6he7-RZchOVzhA _model_server_result.datetime_utc '2024-10-18 19:34:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QGB # _exptl.entry_id 5QGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QGB _cell.length_a 89.798 _cell.length_b 89.798 _cell.length_c 106.553 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 377 n n C C2 TRS sing 378 n n C C3 TRS sing 379 n n C N TRS sing 380 n n C1 O1 TRS sing 381 n n C1 H11 TRS sing 382 n n C1 H12 TRS sing 383 n n C2 O2 TRS sing 384 n n C2 H21 TRS sing 385 n n C2 H22 TRS sing 386 n n C3 O3 TRS sing 387 n n C3 H31 TRS sing 388 n n C3 H32 TRS sing 389 n n N HN1 TRS sing 390 n n N HN2 TRS sing 391 n n N HN3 TRS sing 392 n n O1 HO1 TRS sing 393 n n O2 HO2 TRS sing 394 n n O3 HO3 TRS sing 395 n n # _atom_sites.entry_id 5QGB _atom_sites.fract_transf_matrix[1][1] 0.011136 _atom_sites.fract_transf_matrix[1][2] 0.006429 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012859 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JQA A 1 401 1 JQA LIG . C 3 TRS A 1 402 500 TRS TRS . D 4 HOH A 1 501 262 HOH HOH . D 4 HOH A 2 502 159 HOH HOH . D 4 HOH A 3 503 220 HOH HOH . D 4 HOH A 4 504 250 HOH HOH . D 4 HOH A 5 505 212 HOH HOH . D 4 HOH A 6 506 249 HOH HOH . D 4 HOH A 7 507 184 HOH HOH . D 4 HOH A 8 508 171 HOH HOH . D 4 HOH A 9 509 200 HOH HOH . D 4 HOH A 10 510 248 HOH HOH . D 4 HOH A 11 511 142 HOH HOH . D 4 HOH A 12 512 73 HOH HOH . D 4 HOH A 13 513 175 HOH HOH . D 4 HOH A 14 514 169 HOH HOH . D 4 HOH A 15 515 40 HOH HOH . D 4 HOH A 16 516 201 HOH HOH . D 4 HOH A 17 517 158 HOH HOH . D 4 HOH A 18 518 22 HOH HOH . D 4 HOH A 19 519 65 HOH HOH . D 4 HOH A 20 520 192 HOH HOH . D 4 HOH A 21 521 59 HOH HOH . D 4 HOH A 22 522 246 HOH HOH . D 4 HOH A 23 523 126 HOH HOH . D 4 HOH A 24 524 269 HOH HOH . D 4 HOH A 25 525 206 HOH HOH . D 4 HOH A 26 526 60 HOH HOH . D 4 HOH A 27 527 4 HOH HOH . D 4 HOH A 28 528 14 HOH HOH . D 4 HOH A 29 529 20 HOH HOH . D 4 HOH A 30 530 61 HOH HOH . D 4 HOH A 31 531 151 HOH HOH . D 4 HOH A 32 532 3 HOH HOH . D 4 HOH A 33 533 2 HOH HOH . D 4 HOH A 34 534 72 HOH HOH . D 4 HOH A 35 535 241 HOH HOH . D 4 HOH A 36 536 12 HOH HOH . D 4 HOH A 37 537 163 HOH HOH . D 4 HOH A 38 538 6 HOH HOH . D 4 HOH A 39 539 174 HOH HOH . D 4 HOH A 40 540 136 HOH HOH . D 4 HOH A 41 541 10 HOH HOH . D 4 HOH A 42 542 137 HOH HOH . D 4 HOH A 43 543 261 HOH HOH . D 4 HOH A 44 544 216 HOH HOH . D 4 HOH A 45 545 27 HOH HOH . D 4 HOH A 46 546 223 HOH HOH . D 4 HOH A 47 547 176 HOH HOH . D 4 HOH A 48 548 63 HOH HOH . D 4 HOH A 49 549 115 HOH HOH . D 4 HOH A 50 550 222 HOH HOH . D 4 HOH A 51 551 268 HOH HOH . D 4 HOH A 52 552 42 HOH HOH . D 4 HOH A 53 553 105 HOH HOH . D 4 HOH A 54 554 26 HOH HOH . D 4 HOH A 55 555 243 HOH HOH . D 4 HOH A 56 556 92 HOH HOH . D 4 HOH A 57 557 18 HOH HOH . D 4 HOH A 58 558 131 HOH HOH . D 4 HOH A 59 559 152 HOH HOH . D 4 HOH A 60 560 37 HOH HOH . D 4 HOH A 61 561 7 HOH HOH . D 4 HOH A 62 562 11 HOH HOH . D 4 HOH A 63 563 255 HOH HOH . D 4 HOH A 64 564 139 HOH HOH . D 4 HOH A 65 565 79 HOH HOH . D 4 HOH A 66 566 129 HOH HOH . D 4 HOH A 67 567 9 HOH HOH . D 4 HOH A 68 568 264 HOH HOH . D 4 HOH A 69 569 181 HOH HOH . D 4 HOH A 70 570 38 HOH HOH . D 4 HOH A 71 571 89 HOH HOH . D 4 HOH A 72 572 80 HOH HOH . D 4 HOH A 73 573 168 HOH HOH . D 4 HOH A 74 574 167 HOH HOH . D 4 HOH A 75 575 144 HOH HOH . D 4 HOH A 76 576 114 HOH HOH . D 4 HOH A 77 577 33 HOH HOH . D 4 HOH A 78 578 44 HOH HOH . D 4 HOH A 79 579 110 HOH HOH . D 4 HOH A 80 580 8 HOH HOH . D 4 HOH A 81 581 31 HOH HOH . D 4 HOH A 82 582 125 HOH HOH . D 4 HOH A 83 583 5 HOH HOH . D 4 HOH A 84 584 183 HOH HOH . D 4 HOH A 85 585 196 HOH HOH . D 4 HOH A 86 586 227 HOH HOH . D 4 HOH A 87 587 45 HOH HOH . D 4 HOH A 88 588 71 HOH HOH . D 4 HOH A 89 589 103 HOH HOH . D 4 HOH A 90 590 1 HOH HOH . D 4 HOH A 91 591 100 HOH HOH . D 4 HOH A 92 592 124 HOH HOH . D 4 HOH A 93 593 188 HOH HOH . D 4 HOH A 94 594 13 HOH HOH . D 4 HOH A 95 595 83 HOH HOH . D 4 HOH A 96 596 25 HOH HOH . D 4 HOH A 97 597 239 HOH HOH . D 4 HOH A 98 598 148 HOH HOH . D 4 HOH A 99 599 145 HOH HOH . D 4 HOH A 100 600 87 HOH HOH . D 4 HOH A 101 601 205 HOH HOH . D 4 HOH A 102 602 285 HOH HOH . D 4 HOH A 103 603 98 HOH HOH . D 4 HOH A 104 604 208 HOH HOH . D 4 HOH A 105 605 86 HOH HOH . D 4 HOH A 106 606 157 HOH HOH . D 4 HOH A 107 607 68 HOH HOH . D 4 HOH A 108 608 96 HOH HOH . D 4 HOH A 109 609 245 HOH HOH . D 4 HOH A 110 610 134 HOH HOH . D 4 HOH A 111 611 107 HOH HOH . D 4 HOH A 112 612 28 HOH HOH . D 4 HOH A 113 613 46 HOH HOH . D 4 HOH A 114 614 43 HOH HOH . D 4 HOH A 115 615 34 HOH HOH . D 4 HOH A 116 616 238 HOH HOH . D 4 HOH A 117 617 155 HOH HOH . D 4 HOH A 118 618 81 HOH HOH . D 4 HOH A 119 619 62 HOH HOH . D 4 HOH A 120 620 240 HOH HOH . D 4 HOH A 121 621 16 HOH HOH . D 4 HOH A 122 622 283 HOH HOH . D 4 HOH A 123 623 56 HOH HOH . D 4 HOH A 124 624 251 HOH HOH . D 4 HOH A 125 625 48 HOH HOH . D 4 HOH A 126 626 187 HOH HOH . D 4 HOH A 127 627 55 HOH HOH . D 4 HOH A 128 628 32 HOH HOH . D 4 HOH A 129 629 24 HOH HOH . D 4 HOH A 130 630 94 HOH HOH . D 4 HOH A 131 631 58 HOH HOH . D 4 HOH A 132 632 247 HOH HOH . D 4 HOH A 133 633 119 HOH HOH . D 4 HOH A 134 634 19 HOH HOH . D 4 HOH A 135 635 232 HOH HOH . D 4 HOH A 136 636 76 HOH HOH . D 4 HOH A 137 637 204 HOH HOH . D 4 HOH A 138 638 161 HOH HOH . D 4 HOH A 139 639 102 HOH HOH . D 4 HOH A 140 640 104 HOH HOH . D 4 HOH A 141 641 70 HOH HOH . D 4 HOH A 142 642 41 HOH HOH . D 4 HOH A 143 643 99 HOH HOH . D 4 HOH A 144 644 160 HOH HOH . D 4 HOH A 145 645 51 HOH HOH . D 4 HOH A 146 646 211 HOH HOH . D 4 HOH A 147 647 112 HOH HOH . D 4 HOH A 148 648 226 HOH HOH . D 4 HOH A 149 649 35 HOH HOH . D 4 HOH A 150 650 97 HOH HOH . D 4 HOH A 151 651 54 HOH HOH . D 4 HOH A 152 652 230 HOH HOH . D 4 HOH A 153 653 17 HOH HOH . D 4 HOH A 154 654 162 HOH HOH . D 4 HOH A 155 655 121 HOH HOH . D 4 HOH A 156 656 263 HOH HOH . D 4 HOH A 157 657 254 HOH HOH . D 4 HOH A 158 658 120 HOH HOH . D 4 HOH A 159 659 85 HOH HOH . D 4 HOH A 160 660 23 HOH HOH . D 4 HOH A 161 661 113 HOH HOH . D 4 HOH A 162 662 277 HOH HOH . D 4 HOH A 163 663 95 HOH HOH . D 4 HOH A 164 664 15 HOH HOH . D 4 HOH A 165 665 106 HOH HOH . D 4 HOH A 166 666 270 HOH HOH . D 4 HOH A 167 667 116 HOH HOH . D 4 HOH A 168 668 36 HOH HOH . D 4 HOH A 169 669 91 HOH HOH . D 4 HOH A 170 670 47 HOH HOH . D 4 HOH A 171 671 259 HOH HOH . D 4 HOH A 172 672 235 HOH HOH . D 4 HOH A 173 673 75 HOH HOH . D 4 HOH A 174 674 21 HOH HOH . D 4 HOH A 175 675 164 HOH HOH . D 4 HOH A 176 676 219 HOH HOH . D 4 HOH A 177 677 88 HOH HOH . D 4 HOH A 178 678 150 HOH HOH . D 4 HOH A 179 679 224 HOH HOH . D 4 HOH A 180 680 84 HOH HOH . D 4 HOH A 181 681 258 HOH HOH . D 4 HOH A 182 682 39 HOH HOH . D 4 HOH A 183 683 173 HOH HOH . D 4 HOH A 184 684 275 HOH HOH . D 4 HOH A 185 685 231 HOH HOH . D 4 HOH A 186 686 82 HOH HOH . D 4 HOH A 187 687 172 HOH HOH . D 4 HOH A 188 688 53 HOH HOH . D 4 HOH A 189 689 280 HOH HOH . D 4 HOH A 190 690 118 HOH HOH . D 4 HOH A 191 691 111 HOH HOH . D 4 HOH A 192 692 50 HOH HOH . D 4 HOH A 193 693 49 HOH HOH . D 4 HOH A 194 694 276 HOH HOH . D 4 HOH A 195 695 127 HOH HOH . D 4 HOH A 196 696 282 HOH HOH . D 4 HOH A 197 697 138 HOH HOH . D 4 HOH A 198 698 132 HOH HOH . D 4 HOH A 199 699 117 HOH HOH . D 4 HOH A 200 700 29 HOH HOH . D 4 HOH A 201 701 52 HOH HOH . D 4 HOH A 202 702 252 HOH HOH . D 4 HOH A 203 703 256 HOH HOH . D 4 HOH A 204 704 274 HOH HOH . D 4 HOH A 205 705 57 HOH HOH . D 4 HOH A 206 706 257 HOH HOH . D 4 HOH A 207 707 165 HOH HOH . D 4 HOH A 208 708 78 HOH HOH . D 4 HOH A 209 709 210 HOH HOH . D 4 HOH A 210 710 135 HOH HOH . D 4 HOH A 211 711 242 HOH HOH . D 4 HOH A 212 712 170 HOH HOH . D 4 HOH A 213 713 101 HOH HOH . D 4 HOH A 214 714 244 HOH HOH . D 4 HOH A 215 715 166 HOH HOH . D 4 HOH A 216 716 146 HOH HOH . D 4 HOH A 217 717 64 HOH HOH . D 4 HOH A 218 718 236 HOH HOH . D 4 HOH A 219 719 198 HOH HOH . D 4 HOH A 220 720 69 HOH HOH . D 4 HOH A 221 721 133 HOH HOH . D 4 HOH A 222 722 140 HOH HOH . D 4 HOH A 223 723 108 HOH HOH . D 4 HOH A 224 724 195 HOH HOH . D 4 HOH A 225 725 202 HOH HOH . D 4 HOH A 226 726 229 HOH HOH . D 4 HOH A 227 727 215 HOH HOH . D 4 HOH A 228 728 228 HOH HOH . D 4 HOH A 229 729 266 HOH HOH . D 4 HOH A 230 730 221 HOH HOH . D 4 HOH A 231 731 271 HOH HOH . D 4 HOH A 232 732 77 HOH HOH . D 4 HOH A 233 733 109 HOH HOH . D 4 HOH A 234 734 203 HOH HOH . D 4 HOH A 235 735 74 HOH HOH . D 4 HOH A 236 736 30 HOH HOH . D 4 HOH A 237 737 128 HOH HOH . D 4 HOH A 238 738 272 HOH HOH . D 4 HOH A 239 739 237 HOH HOH . D 4 HOH A 240 740 225 HOH HOH . D 4 HOH A 241 741 253 HOH HOH . D 4 HOH A 242 742 123 HOH HOH . D 4 HOH A 243 743 267 HOH HOH . D 4 HOH A 244 744 214 HOH HOH . D 4 HOH A 245 745 186 HOH HOH . D 4 HOH A 246 746 281 HOH HOH . D 4 HOH A 247 747 190 HOH HOH . D 4 HOH A 248 748 154 HOH HOH . D 4 HOH A 249 749 122 HOH HOH . D 4 HOH A 250 750 233 HOH HOH . D 4 HOH A 251 751 273 HOH HOH . D 4 HOH A 252 752 149 HOH HOH . D 4 HOH A 253 753 147 HOH HOH . D 4 HOH A 254 754 141 HOH HOH . D 4 HOH A 255 755 143 HOH HOH . D 4 HOH A 256 756 90 HOH HOH . D 4 HOH A 257 757 180 HOH HOH . D 4 HOH A 258 758 185 HOH HOH . D 4 HOH A 259 759 193 HOH HOH . D 4 HOH A 260 760 279 HOH HOH . D 4 HOH A 261 761 197 HOH HOH . D 4 HOH A 262 762 66 HOH HOH . D 4 HOH A 263 763 209 HOH HOH . D 4 HOH A 264 764 207 HOH HOH . D 4 HOH A 265 765 130 HOH HOH . D 4 HOH A 266 766 284 HOH HOH . D 4 HOH A 267 767 93 HOH HOH . D 4 HOH A 268 768 153 HOH HOH . D 4 HOH A 269 769 156 HOH HOH . D 4 HOH A 270 770 278 HOH HOH . D 4 HOH A 271 771 177 HOH HOH . D 4 HOH A 272 772 218 HOH HOH . D 4 HOH A 273 773 286 HOH HOH . D 4 HOH A 274 774 217 HOH HOH . D 4 HOH A 275 775 199 HOH HOH . D 4 HOH A 276 776 234 HOH HOH . D 4 HOH A 277 777 194 HOH HOH . D 4 HOH A 278 778 178 HOH HOH . D 4 HOH A 279 779 67 HOH HOH . D 4 HOH A 280 780 260 HOH HOH . D 4 HOH A 281 781 179 HOH HOH . D 4 HOH A 282 782 189 HOH HOH . D 4 HOH A 283 783 265 HOH HOH . D 4 HOH A 284 784 213 HOH HOH . D 4 HOH A 285 785 191 HOH HOH . D 4 HOH A 286 786 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 3 21.203 -40.895 -22.705 1 16.65 ? C TRS 402 A 1 HETATM 2 C C1 TRS . . . C 3 20.707 -39.818 -21.753 1 42.43 ? C1 TRS 402 A 1 HETATM 3 C C2 TRS . . . C 3 20.617 -40.848 -24.073 1 97.13 ? C2 TRS 402 A 1 HETATM 4 C C3 TRS . . . C 3 21.044 -42.263 -22.091 1 65.11 ? C3 TRS 402 A 1 HETATM 5 N N TRS . . . C 3 22.696 -40.707 -22.813 1 70.51 ? N TRS 402 A 1 HETATM 6 O O1 TRS . . . C 3 21.766 -38.98 -21.393 1 95.06 ? O1 TRS 402 A 1 HETATM 7 O O2 TRS . . . C 3 20.847 -39.543 -24.536 1 44.29 ? O2 TRS 402 A 1 HETATM 8 O O3 TRS . . . C 3 21.629 -42.219 -20.861 1 35.74 ? O3 TRS 402 A 1 HETATM 9 H H11 TRS . . . C 3 20.296 -40.287 -20.856 1 50.91 ? H11 TRS 402 A 1 HETATM 10 H H12 TRS . . . C 3 19.93 -39.228 -22.244 1 50.91 ? H12 TRS 402 A 1 HETATM 11 H H21 TRS . . . C 3 19.549 -41.07 -24.019 1 116.56 ? H21 TRS 402 A 1 HETATM 12 H H22 TRS . . . C 3 21.11 -41.589 -24.706 1 116.56 ? H22 TRS 402 A 1 HETATM 13 H H31 TRS . . . C 3 19.987 -42.517 -21.983 1 78.13 ? H31 TRS 402 A 1 HETATM 14 H H32 TRS . . . C 3 21.539 -43.02 -22.703 1 78.13 ? H32 TRS 402 A 1 HETATM 15 H HN1 TRS . . . C 3 23.118 -40.761 -21.872 1 84.61 ? HN1 TRS 402 A 1 HETATM 16 H HN2 TRS . . . C 3 23.094 -41.449 -23.412 1 84.61 ? HN2 TRS 402 A 1 HETATM 17 H HN3 TRS . . . C 3 22.897 -39.784 -23.229 1 84.61 ? HN3 TRS 402 A 1 HETATM 18 H HO1 TRS . . . C 3 21.445 -38.297 -20.788 1 114.07 ? HO1 TRS 402 A 1 HETATM 19 H HO2 TRS . . . C 3 20.485 -39.45 -25.428 1 53.14 ? HO2 TRS 402 A 1 HETATM 20 H HO3 TRS . . . C 3 21.987 -41.335 -20.706 1 42.89 ? HO3 TRS 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #