data_5QGL # _model_server_result.job_id q9GTjdbh5tW1X2JYnA1cQQ _model_server_result.datetime_utc '2024-11-24 22:56:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qgl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5QGL # _exptl.entry_id 5QGL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.199 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3,4,5-trimethoxybenzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QGL _cell.length_a 125.903 _cell.length_b 125.903 _cell.length_c 41.664 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QGL _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 87 A ARG 101 1_555 A N HYP 88 A HYP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 A C HYP 88 A HYP 102 1_555 A N HIS 89 A HIS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C VAL 94 A VAL 108 1_555 A N CSO 95 A CSO 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C CSO 95 A CSO 109 1_555 A N CYS 96 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C10 H12 O5' _chem_comp.formula_weight 212.199 _chem_comp.id H5A _chem_comp.mon_nstd_flag . _chem_comp.name '3,4,5-trimethoxybenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 O2 H5A sing 158 n n O2 C7 H5A sing 159 n n O1 C1 H5A sing 160 n n O1 C2 H5A sing 161 n n O3 C9 H5A sing 162 n n O3 C6 H5A sing 163 n n C7 C2 H5A doub 164 n y C7 C6 H5A sing 165 n y C2 C3 H5A sing 166 n y C6 C5 H5A doub 167 n y C5 C4 H5A sing 168 n y C3 C4 H5A doub 169 n y C4 C10 H5A sing 170 n n C10 O4 H5A doub 171 n n C10 O5 H5A sing 172 n n C5 H1 H5A sing 173 n n C8 H2 H5A sing 174 n n C8 H3 H5A sing 175 n n C8 H4 H5A sing 176 n n C1 H5 H5A sing 177 n n C1 H6 H5A sing 178 n n C1 H7 H5A sing 179 n n C3 H8 H5A sing 180 n n C9 H9 H5A sing 181 n n C9 H10 H5A sing 182 n n C9 H11 H5A sing 183 n n O5 H12 H5A sing 184 n n # _atom_sites.entry_id 5QGL _atom_sites.fract_transf_matrix[1][1] 0.007943 _atom_sites.fract_transf_matrix[1][2] 0.004586 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024002 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 301 1 ACT ACT . C 2 ACT A 1 302 2 ACT ACT . D 3 DMS A 1 303 1 DMS DMS . E 3 DMS A 1 304 2 DMS DMS . F 4 H5A A 1 305 1 H5A LIG . G 5 HOH A 1 401 9 HOH HOH . G 5 HOH A 2 402 69 HOH HOH . G 5 HOH A 3 403 94 HOH HOH . G 5 HOH A 4 404 162 HOH HOH . G 5 HOH A 5 405 140 HOH HOH . G 5 HOH A 6 406 199 HOH HOH . G 5 HOH A 7 407 143 HOH HOH . G 5 HOH A 8 408 109 HOH HOH . G 5 HOH A 9 409 48 HOH HOH . G 5 HOH A 10 410 76 HOH HOH . G 5 HOH A 11 411 157 HOH HOH . G 5 HOH A 12 412 198 HOH HOH . G 5 HOH A 13 413 77 HOH HOH . G 5 HOH A 14 414 117 HOH HOH . G 5 HOH A 15 415 14 HOH HOH . G 5 HOH A 16 416 167 HOH HOH . G 5 HOH A 17 417 113 HOH HOH . G 5 HOH A 18 418 13 HOH HOH . G 5 HOH A 19 419 53 HOH HOH . G 5 HOH A 20 420 124 HOH HOH . G 5 HOH A 21 421 93 HOH HOH . G 5 HOH A 22 422 30 HOH HOH . G 5 HOH A 23 423 179 HOH HOH . G 5 HOH A 24 424 134 HOH HOH . G 5 HOH A 25 425 85 HOH HOH . G 5 HOH A 26 426 186 HOH HOH . G 5 HOH A 27 427 64 HOH HOH . G 5 HOH A 28 428 36 HOH HOH . G 5 HOH A 29 429 105 HOH HOH . G 5 HOH A 30 430 10 HOH HOH . G 5 HOH A 31 431 49 HOH HOH . G 5 HOH A 32 432 47 HOH HOH . G 5 HOH A 33 433 42 HOH HOH . G 5 HOH A 34 434 71 HOH HOH . G 5 HOH A 35 435 97 HOH HOH . G 5 HOH A 36 436 166 HOH HOH . G 5 HOH A 37 437 161 HOH HOH . G 5 HOH A 38 438 99 HOH HOH . G 5 HOH A 39 439 12 HOH HOH . G 5 HOH A 40 440 182 HOH HOH . G 5 HOH A 41 441 197 HOH HOH . G 5 HOH A 42 442 89 HOH HOH . G 5 HOH A 43 443 58 HOH HOH . G 5 HOH A 44 444 2 HOH HOH . G 5 HOH A 45 445 181 HOH HOH . G 5 HOH A 46 446 38 HOH HOH . G 5 HOH A 47 447 35 HOH HOH . G 5 HOH A 48 448 75 HOH HOH . G 5 HOH A 49 449 26 HOH HOH . G 5 HOH A 50 450 183 HOH HOH . G 5 HOH A 51 451 193 HOH HOH . G 5 HOH A 52 452 187 HOH HOH . G 5 HOH A 53 453 108 HOH HOH . G 5 HOH A 54 454 104 HOH HOH . G 5 HOH A 55 455 112 HOH HOH . G 5 HOH A 56 456 156 HOH HOH . G 5 HOH A 57 457 118 HOH HOH . G 5 HOH A 58 458 125 HOH HOH . G 5 HOH A 59 459 80 HOH HOH . G 5 HOH A 60 460 101 HOH HOH . G 5 HOH A 61 461 15 HOH HOH . G 5 HOH A 62 462 34 HOH HOH . G 5 HOH A 63 463 51 HOH HOH . G 5 HOH A 64 464 200 HOH HOH . G 5 HOH A 65 465 128 HOH HOH . G 5 HOH A 66 466 22 HOH HOH . G 5 HOH A 67 467 103 HOH HOH . G 5 HOH A 68 468 59 HOH HOH . G 5 HOH A 69 469 39 HOH HOH . G 5 HOH A 70 470 8 HOH HOH . G 5 HOH A 71 471 201 HOH HOH . G 5 HOH A 72 472 154 HOH HOH . G 5 HOH A 73 473 28 HOH HOH . G 5 HOH A 74 474 121 HOH HOH . G 5 HOH A 75 475 6 HOH HOH . G 5 HOH A 76 476 43 HOH HOH . G 5 HOH A 77 477 102 HOH HOH . G 5 HOH A 78 478 158 HOH HOH . G 5 HOH A 79 479 27 HOH HOH . G 5 HOH A 80 480 1 HOH HOH . G 5 HOH A 81 481 37 HOH HOH . G 5 HOH A 82 482 24 HOH HOH . G 5 HOH A 83 483 79 HOH HOH . G 5 HOH A 84 484 146 HOH HOH . G 5 HOH A 85 485 72 HOH HOH . G 5 HOH A 86 486 139 HOH HOH . G 5 HOH A 87 487 153 HOH HOH . G 5 HOH A 88 488 11 HOH HOH . G 5 HOH A 89 489 17 HOH HOH . G 5 HOH A 90 490 78 HOH HOH . G 5 HOH A 91 491 62 HOH HOH . G 5 HOH A 92 492 25 HOH HOH . G 5 HOH A 93 493 40 HOH HOH . G 5 HOH A 94 494 98 HOH HOH . G 5 HOH A 95 495 23 HOH HOH . G 5 HOH A 96 496 19 HOH HOH . G 5 HOH A 97 497 46 HOH HOH . G 5 HOH A 98 498 7 HOH HOH . G 5 HOH A 99 499 202 HOH HOH . G 5 HOH A 100 500 55 HOH HOH . G 5 HOH A 101 501 45 HOH HOH . G 5 HOH A 102 502 176 HOH HOH . G 5 HOH A 103 503 31 HOH HOH . G 5 HOH A 104 504 152 HOH HOH . G 5 HOH A 105 505 61 HOH HOH . G 5 HOH A 106 506 137 HOH HOH . G 5 HOH A 107 507 150 HOH HOH . G 5 HOH A 108 508 111 HOH HOH . G 5 HOH A 109 509 145 HOH HOH . G 5 HOH A 110 510 21 HOH HOH . G 5 HOH A 111 511 149 HOH HOH . G 5 HOH A 112 512 169 HOH HOH . G 5 HOH A 113 513 170 HOH HOH . G 5 HOH A 114 514 5 HOH HOH . G 5 HOH A 115 515 141 HOH HOH . G 5 HOH A 116 516 63 HOH HOH . G 5 HOH A 117 517 191 HOH HOH . G 5 HOH A 118 518 116 HOH HOH . G 5 HOH A 119 519 138 HOH HOH . G 5 HOH A 120 520 173 HOH HOH . G 5 HOH A 121 521 96 HOH HOH . G 5 HOH A 122 522 129 HOH HOH . G 5 HOH A 123 523 119 HOH HOH . G 5 HOH A 124 524 155 HOH HOH . G 5 HOH A 125 525 160 HOH HOH . G 5 HOH A 126 526 110 HOH HOH . G 5 HOH A 127 527 82 HOH HOH . G 5 HOH A 128 528 50 HOH HOH . G 5 HOH A 129 529 106 HOH HOH . G 5 HOH A 130 530 175 HOH HOH . G 5 HOH A 131 531 16 HOH HOH . G 5 HOH A 132 532 29 HOH HOH . G 5 HOH A 133 533 122 HOH HOH . G 5 HOH A 134 534 196 HOH HOH . G 5 HOH A 135 535 159 HOH HOH . G 5 HOH A 136 536 177 HOH HOH . G 5 HOH A 137 537 66 HOH HOH . G 5 HOH A 138 538 126 HOH HOH . G 5 HOH A 139 539 86 HOH HOH . G 5 HOH A 140 540 174 HOH HOH . G 5 HOH A 141 541 57 HOH HOH . G 5 HOH A 142 542 123 HOH HOH . G 5 HOH A 143 543 44 HOH HOH . G 5 HOH A 144 544 144 HOH HOH . G 5 HOH A 145 545 90 HOH HOH . G 5 HOH A 146 546 172 HOH HOH . G 5 HOH A 147 547 168 HOH HOH . G 5 HOH A 148 548 132 HOH HOH . G 5 HOH A 149 549 190 HOH HOH . G 5 HOH A 150 550 180 HOH HOH . G 5 HOH A 151 551 88 HOH HOH . G 5 HOH A 152 552 147 HOH HOH . G 5 HOH A 153 553 65 HOH HOH . G 5 HOH A 154 554 195 HOH HOH . G 5 HOH A 155 555 192 HOH HOH . G 5 HOH A 156 556 131 HOH HOH . G 5 HOH A 157 557 184 HOH HOH . G 5 HOH A 158 558 194 HOH HOH . G 5 HOH A 159 559 188 HOH HOH . G 5 HOH A 160 560 185 HOH HOH . G 5 HOH A 161 561 130 HOH HOH . G 5 HOH A 162 562 165 HOH HOH . G 5 HOH A 163 563 164 HOH HOH . G 5 HOH A 164 564 171 HOH HOH . G 5 HOH A 165 565 127 HOH HOH . G 5 HOH A 166 566 148 HOH HOH . G 5 HOH A 167 567 68 HOH HOH . G 5 HOH A 168 568 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 H5A . . . F 4 34.21 -44.811 77.649 0.47 41.63 ? C4 H5A 305 A 1 HETATM 2 C C5 H5A . . . F 4 35.387 -45.125 76.977 0.47 43.77 ? C5 H5A 305 A 1 HETATM 3 C C6 H5A . . . F 4 35.349 -45.447 75.645 0.47 43.96 ? C6 H5A 305 A 1 HETATM 4 C C7 H5A . . . F 4 34.131 -45.415 74.963 0.47 42.68 ? C7 H5A 305 A 1 HETATM 5 C C8 H5A . . . F 4 33.024 -46.655 73.33 0.47 40.25 ? C8 H5A 305 A 1 HETATM 6 C C10 H5A . . . F 4 34.269 -44.464 79.098 0.47 42.01 ? C10 H5A 305 A 1 HETATM 7 C C1 H5A . . . F 4 30.608 -44.698 75.476 0.47 45.7 ? C1 H5A 305 A 1 HETATM 8 O O1 H5A . . . F 4 31.821 -45.143 74.877 0.47 46.47 ? O1 H5A 305 A 1 HETATM 9 C C2 H5A . . . F 4 32.953 -45.102 75.642 0.47 44.66 ? C2 H5A 305 A 1 HETATM 10 C C3 H5A . . . F 4 32.991 -44.794 76.979 0.47 42.8 ? C3 H5A 305 A 1 HETATM 11 O O2 H5A . . . F 4 34.07 -45.737 73.631 0.47 41.09 ? O2 H5A 305 A 1 HETATM 12 O O3 H5A . . . F 4 36.448 -45.723 74.879 0.47 45.4 ? O3 H5A 305 A 1 HETATM 13 C C9 H5A . . . F 4 37.128 -46.958 75.076 0.47 48.2 ? C9 H5A 305 A 1 HETATM 14 O O4 H5A . . . F 4 35.352 -44.065 79.547 0.47 39.71 ? O4 H5A 305 A 1 HETATM 15 O O5 H5A . . . F 4 33.235 -44.583 79.767 0.47 41.68 -1 O5 H5A 305 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #