data_5QGN # _model_server_result.job_id uu1JsK73EjWnyM6vvJPHVw _model_server_result.datetime_utc '2024-10-19 19:32:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5QGN # _exptl.entry_id 5QGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 305.114 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-borono-5-{[(thiophen-2-yl)acetyl]amino}benzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QGN _cell.length_a 126.179 _cell.length_b 126.179 _cell.length_c 41.665 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 87 A ARG 101 1_555 A N HYP 88 A HYP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale2 A C HYP 88 A HYP 102 1_555 A N HIS 89 A HIS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C VAL 94 A VAL 108 1_555 A N CSO 95 A CSO 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale4 A C CSO 95 A CSO 109 1_555 A N CYS 96 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? # _chem_comp.formula 'C13 H12 B N O5 S' _chem_comp.formula_weight 305.114 _chem_comp.id H4D _chem_comp.mon_nstd_flag . _chem_comp.name '3-borono-5-{[(thiophen-2-yl)acetyl]amino}benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C12 H4D doub 158 n n O5 C12 H4D sing 159 n n C12 C11 H4D sing 160 n n C11 C10 H4D doub 161 n y C11 C13 H4D sing 162 n y C10 C9 H4D sing 163 n y C13 C7 H4D doub 164 n y O2 B1 H4D sing 165 n n C9 B1 H4D sing 166 n n C9 C8 H4D doub 167 n y C7 C8 H4D sing 168 n y C7 N1 H4D sing 169 n n B1 O3 H4D sing 170 n n N1 C1 H4D sing 171 n n C1 O1 H4D doub 172 n n C1 C2 H4D sing 173 n n C2 C3 H4D sing 174 n n S1 C3 H4D sing 175 n y S1 C6 H4D sing 176 n y C3 C4 H4D doub 177 n y C4 C5 H4D sing 178 n y C6 C5 H4D doub 179 n y N1 H1 H4D sing 180 n n C4 H2 H4D sing 181 n n C5 H3 H4D sing 182 n n C6 H4 H4D sing 183 n n C8 H5 H4D sing 184 n n C10 H6 H4D sing 185 n n C13 H7 H4D sing 186 n n C2 H8 H4D sing 187 n n C2 H9 H4D sing 188 n n O2 H10 H4D sing 189 n n O5 H11 H4D sing 190 n n O3 H12 H4D sing 191 n n # _atom_sites.entry_id 5QGN _atom_sites.fract_transf_matrix[1][1] 0.007925 _atom_sites.fract_transf_matrix[1][2] 0.004576 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 301 1 ACT ACT . C 2 ACT A 1 302 2 ACT ACT . D 3 DMS A 1 303 1 DMS DMS . E 3 DMS A 1 304 2 DMS DMS . F 4 H4D A 1 305 1 H4D LIG . G 4 H4D A 1 306 2 H4D LIG . H 5 HOH A 1 401 69 HOH HOH . H 5 HOH A 2 402 71 HOH HOH . H 5 HOH A 3 403 125 HOH HOH . H 5 HOH A 4 404 150 HOH HOH . H 5 HOH A 5 405 199 HOH HOH . H 5 HOH A 6 406 9 HOH HOH . H 5 HOH A 7 407 143 HOH HOH . H 5 HOH A 8 408 166 HOH HOH . H 5 HOH A 9 409 128 HOH HOH . H 5 HOH A 10 410 85 HOH HOH . H 5 HOH A 11 411 27 HOH HOH . H 5 HOH A 12 412 117 HOH HOH . H 5 HOH A 13 413 134 HOH HOH . H 5 HOH A 14 414 80 HOH HOH . H 5 HOH A 15 415 77 HOH HOH . H 5 HOH A 16 416 124 HOH HOH . H 5 HOH A 17 417 101 HOH HOH . H 5 HOH A 18 418 183 HOH HOH . H 5 HOH A 19 419 53 HOH HOH . H 5 HOH A 20 420 24 HOH HOH . H 5 HOH A 21 421 64 HOH HOH . H 5 HOH A 22 422 89 HOH HOH . H 5 HOH A 23 423 79 HOH HOH . H 5 HOH A 24 424 140 HOH HOH . H 5 HOH A 25 425 113 HOH HOH . H 5 HOH A 26 426 112 HOH HOH . H 5 HOH A 27 427 10 HOH HOH . H 5 HOH A 28 428 20 HOH HOH . H 5 HOH A 29 429 156 HOH HOH . H 5 HOH A 30 430 179 HOH HOH . H 5 HOH A 31 431 47 HOH HOH . H 5 HOH A 32 432 49 HOH HOH . H 5 HOH A 33 433 137 HOH HOH . H 5 HOH A 34 434 14 HOH HOH . H 5 HOH A 35 435 58 HOH HOH . H 5 HOH A 36 436 162 HOH HOH . H 5 HOH A 37 437 76 HOH HOH . H 5 HOH A 38 438 13 HOH HOH . H 5 HOH A 39 439 97 HOH HOH . H 5 HOH A 40 440 75 HOH HOH . H 5 HOH A 41 441 105 HOH HOH . H 5 HOH A 42 442 26 HOH HOH . H 5 HOH A 43 443 197 HOH HOH . H 5 HOH A 44 444 82 HOH HOH . H 5 HOH A 45 445 61 HOH HOH . H 5 HOH A 46 446 109 HOH HOH . H 5 HOH A 47 447 141 HOH HOH . H 5 HOH A 48 448 187 HOH HOH . H 5 HOH A 49 449 167 HOH HOH . H 5 HOH A 50 450 48 HOH HOH . H 5 HOH A 51 451 200 HOH HOH . H 5 HOH A 52 452 19 HOH HOH . H 5 HOH A 53 453 198 HOH HOH . H 5 HOH A 54 454 15 HOH HOH . H 5 HOH A 55 455 22 HOH HOH . H 5 HOH A 56 456 6 HOH HOH . H 5 HOH A 57 457 12 HOH HOH . H 5 HOH A 58 458 8 HOH HOH . H 5 HOH A 59 459 38 HOH HOH . H 5 HOH A 60 460 102 HOH HOH . H 5 HOH A 61 461 35 HOH HOH . H 5 HOH A 62 462 39 HOH HOH . H 5 HOH A 63 463 103 HOH HOH . H 5 HOH A 64 464 99 HOH HOH . H 5 HOH A 65 465 182 HOH HOH . H 5 HOH A 66 466 108 HOH HOH . H 5 HOH A 67 467 18 HOH HOH . H 5 HOH A 68 468 173 HOH HOH . H 5 HOH A 69 469 36 HOH HOH . H 5 HOH A 70 470 46 HOH HOH . H 5 HOH A 71 471 118 HOH HOH . H 5 HOH A 72 472 104 HOH HOH . H 5 HOH A 73 473 3 HOH HOH . H 5 HOH A 74 474 55 HOH HOH . H 5 HOH A 75 475 139 HOH HOH . H 5 HOH A 76 476 28 HOH HOH . H 5 HOH A 77 477 1 HOH HOH . H 5 HOH A 78 478 193 HOH HOH . H 5 HOH A 79 479 152 HOH HOH . H 5 HOH A 80 480 37 HOH HOH . H 5 HOH A 81 481 106 HOH HOH . H 5 HOH A 82 482 2 HOH HOH . H 5 HOH A 83 483 153 HOH HOH . H 5 HOH A 84 484 158 HOH HOH . H 5 HOH A 85 485 45 HOH HOH . H 5 HOH A 86 486 62 HOH HOH . H 5 HOH A 87 487 59 HOH HOH . H 5 HOH A 88 488 116 HOH HOH . H 5 HOH A 89 489 146 HOH HOH . H 5 HOH A 90 490 30 HOH HOH . H 5 HOH A 91 491 43 HOH HOH . H 5 HOH A 92 492 7 HOH HOH . H 5 HOH A 93 493 121 HOH HOH . H 5 HOH A 94 494 154 HOH HOH . H 5 HOH A 95 495 157 HOH HOH . H 5 HOH A 96 496 176 HOH HOH . H 5 HOH A 97 497 160 HOH HOH . H 5 HOH A 98 498 111 HOH HOH . H 5 HOH A 99 499 31 HOH HOH . H 5 HOH A 100 500 94 HOH HOH . H 5 HOH A 101 501 17 HOH HOH . H 5 HOH A 102 502 65 HOH HOH . H 5 HOH A 103 503 42 HOH HOH . H 5 HOH A 104 504 194 HOH HOH . H 5 HOH A 105 505 98 HOH HOH . H 5 HOH A 106 506 78 HOH HOH . H 5 HOH A 107 507 191 HOH HOH . H 5 HOH A 108 508 25 HOH HOH . H 5 HOH A 109 509 63 HOH HOH . H 5 HOH A 110 510 126 HOH HOH . H 5 HOH A 111 511 72 HOH HOH . H 5 HOH A 112 512 21 HOH HOH . H 5 HOH A 113 513 123 HOH HOH . H 5 HOH A 114 514 34 HOH HOH . H 5 HOH A 115 515 170 HOH HOH . H 5 HOH A 116 516 16 HOH HOH . H 5 HOH A 117 517 138 HOH HOH . H 5 HOH A 118 518 96 HOH HOH . H 5 HOH A 119 519 5 HOH HOH . H 5 HOH A 120 520 155 HOH HOH . H 5 HOH A 121 521 145 HOH HOH . H 5 HOH A 122 522 149 HOH HOH . H 5 HOH A 123 523 169 HOH HOH . H 5 HOH A 124 524 110 HOH HOH . H 5 HOH A 125 525 159 HOH HOH . H 5 HOH A 126 526 122 HOH HOH . H 5 HOH A 127 527 132 HOH HOH . H 5 HOH A 128 528 50 HOH HOH . H 5 HOH A 129 529 44 HOH HOH . H 5 HOH A 130 530 186 HOH HOH . H 5 HOH A 131 531 184 HOH HOH . H 5 HOH A 132 532 144 HOH HOH . H 5 HOH A 133 533 161 HOH HOH . H 5 HOH A 134 534 29 HOH HOH . H 5 HOH A 135 535 129 HOH HOH . H 5 HOH A 136 536 119 HOH HOH . H 5 HOH A 137 537 147 HOH HOH . H 5 HOH A 138 538 90 HOH HOH . H 5 HOH A 139 539 57 HOH HOH . H 5 HOH A 140 540 180 HOH HOH . H 5 HOH A 141 541 172 HOH HOH . H 5 HOH A 142 542 175 HOH HOH . H 5 HOH A 143 543 174 HOH HOH . H 5 HOH A 144 544 181 HOH HOH . H 5 HOH A 145 545 192 HOH HOH . H 5 HOH A 146 546 178 HOH HOH . H 5 HOH A 147 547 168 HOH HOH . H 5 HOH A 148 548 23 HOH HOH . H 5 HOH A 149 549 66 HOH HOH . H 5 HOH A 150 550 88 HOH HOH . H 5 HOH A 151 551 195 HOH HOH . H 5 HOH A 152 552 185 HOH HOH . H 5 HOH A 153 553 52 HOH HOH . H 5 HOH A 154 554 127 HOH HOH . H 5 HOH A 155 555 91 HOH HOH . H 5 HOH A 156 556 131 HOH HOH . H 5 HOH A 157 557 188 HOH HOH . H 5 HOH A 158 558 133 HOH HOH . H 5 HOH A 159 559 165 HOH HOH . H 5 HOH A 160 560 148 HOH HOH . H 5 HOH A 161 561 164 HOH HOH . H 5 HOH A 162 562 130 HOH HOH . H 5 HOH A 163 563 171 HOH HOH . H 5 HOH A 164 564 68 HOH HOH . H 5 HOH A 165 565 190 HOH HOH . H 5 HOH A 166 566 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H4D . . . F 4 40.116 -41.035 70.154 0.52 27.61 ? N1 H4D 305 A 1 HETATM 2 C C4 H4D . . . F 4 42.138 -41.829 74.517 0.52 17.37 ? C4 H4D 305 A 1 HETATM 3 C C5 H4D . . . F 4 42.785 -40.853 75.314 0.52 19.84 ? C5 H4D 305 A 1 HETATM 4 C C6 H4D . . . F 4 42.927 -39.657 74.701 0.52 20.4 ? C6 H4D 305 A 1 HETATM 5 C C7 H4D . . . F 4 39.32 -40.231 69.299 0.52 29.76 ? C7 H4D 305 A 1 HETATM 6 C C8 H4D . . . F 4 38.371 -39.337 69.781 0.52 30.69 ? C8 H4D 305 A 1 HETATM 7 C C10 H4D . . . F 4 37.839 -38.678 67.529 0.52 32.23 ? C10 H4D 305 A 1 HETATM 8 C C13 H4D . . . F 4 39.528 -40.331 67.924 0.52 31.88 ? C13 H4D 305 A 1 HETATM 9 O O1 H4D . . . F 4 39.016 -40.84 72.124 0.52 25.43 ? O1 H4D 305 A 1 HETATM 10 C C1 H4D . . . F 4 39.979 -41.237 71.481 0.52 24.23 ? C1 H4D 305 A 1 HETATM 11 C C2 H4D . . . F 4 41.109 -42.017 72.139 0.52 23.32 ? C2 H4D 305 A 1 HETATM 12 C C3 H4D . . . F 4 41.81 -41.306 73.266 0.52 19.78 ? C3 H4D 305 A 1 HETATM 13 S S1 H4D . . . F 4 42.365 -39.704 73.108 0.52 24.12 ? S1 H4D 305 A 1 HETATM 14 C C9 H4D . . . F 4 37.613 -38.558 68.903 0.52 31.2 ? C9 H4D 305 A 1 HETATM 15 B B1 H4D . . . F 4 36.567 -37.549 69.467 0.52 27.8 ? B1 H4D 305 A 1 HETATM 16 O O2 H4D . . . F 4 36.382 -36.358 68.853 0.52 31.68 ? O2 H4D 305 A 1 HETATM 17 O O3 H4D . . . F 4 35.867 -37.798 70.597 0.52 27.78 ? O3 H4D 305 A 1 HETATM 18 C C11 H4D . . . F 4 38.782 -39.569 67.037 0.52 35.2 ? C11 H4D 305 A 1 HETATM 19 C C12 H4D . . . F 4 39.025 -39.664 65.554 0.52 42.77 ? C12 H4D 305 A 1 HETATM 20 O O4 H4D . . . F 4 39.039 -38.598 64.911 0.52 49.13 -1 O4 H4D 305 A 1 HETATM 21 O O5 H4D . . . F 4 39.232 -40.787 65.051 0.52 45.71 ? O5 H4D 305 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #