data_5QGP
#
_model_server_result.job_id            AzdfO72OI8HtG6pxcj5J1g 
_model_server_result.datetime_utc      '2024-10-20 00:39:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qgp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    5QGP 
#
_exptl.entry_id    5QGP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5QGP 
_cell.length_a            126.365 
_cell.length_b            126.365 
_cell.length_c            41.668 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QGP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 87 A ARG 101 1_555 A N HYP 88 A HYP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C HYP 88 A HYP 102 1_555 A N HIS 89 A HIS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 A C VAL 94 A VAL 108 1_555 A N CSO 95 A CSO 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C CSO 95 A CSO 109 1_555 A N CYS 96 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 103 n n 
S C1 DMS sing 104 n n 
S C2 DMS sing 105 n n 
C1 H11 DMS sing 106 n n 
C1 H12 DMS sing 107 n n 
C1 H13 DMS sing 108 n n 
C2 H21 DMS sing 109 n n 
C2 H22 DMS sing 110 n n 
C2 H23 DMS sing 111 n n 
#
_atom_sites.entry_id                     5QGP 
_atom_sites.fract_transf_matrix[1][1]    0.007914 
_atom_sites.fract_transf_matrix[1][2]    0.004569 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009138 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023999 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACT A 1 301 1 ACT ACT . 
C 2 ACT A 1 302 2 ACT ACT . 
D 3 DMS A 1 303 1 DMS DMS . 
E 3 DMS A 1 304 2 DMS DMS . 
F 4 H3Y A 1 305 1 H3Y LIG . 
G 5 HOH A 1 401 112 HOH HOH . 
G 5 HOH A 2 402 9 HOH HOH . 
G 5 HOH A 3 403 124 HOH HOH . 
G 5 HOH A 4 404 94 HOH HOH . 
G 5 HOH A 5 405 69 HOH HOH . 
G 5 HOH A 6 406 80 HOH HOH . 
G 5 HOH A 7 407 140 HOH HOH . 
G 5 HOH A 8 408 143 HOH HOH . 
G 5 HOH A 9 409 53 HOH HOH . 
G 5 HOH A 10 410 14 HOH HOH . 
G 5 HOH A 11 411 48 HOH HOH . 
G 5 HOH A 12 412 199 HOH HOH . 
G 5 HOH A 13 413 24 HOH HOH . 
G 5 HOH A 14 414 89 HOH HOH . 
G 5 HOH A 15 415 51 HOH HOH . 
G 5 HOH A 16 416 162 HOH HOH . 
G 5 HOH A 17 417 156 HOH HOH . 
G 5 HOH A 18 418 101 HOH HOH . 
G 5 HOH A 19 419 109 HOH HOH . 
G 5 HOH A 20 420 108 HOH HOH . 
G 5 HOH A 21 421 35 HOH HOH . 
G 5 HOH A 22 422 71 HOH HOH . 
G 5 HOH A 23 423 49 HOH HOH . 
G 5 HOH A 24 424 117 HOH HOH . 
G 5 HOH A 25 425 134 HOH HOH . 
G 5 HOH A 26 426 79 HOH HOH . 
G 5 HOH A 27 427 157 HOH HOH . 
G 5 HOH A 28 428 36 HOH HOH . 
G 5 HOH A 29 429 18 HOH HOH . 
G 5 HOH A 30 430 6 HOH HOH . 
G 5 HOH A 31 431 10 HOH HOH . 
G 5 HOH A 32 432 13 HOH HOH . 
G 5 HOH A 33 433 97 HOH HOH . 
G 5 HOH A 34 434 61 HOH HOH . 
G 5 HOH A 35 435 27 HOH HOH . 
G 5 HOH A 36 436 167 HOH HOH . 
G 5 HOH A 37 437 154 HOH HOH . 
G 5 HOH A 38 438 19 HOH HOH . 
G 5 HOH A 39 439 113 HOH HOH . 
G 5 HOH A 40 440 159 HOH HOH . 
G 5 HOH A 41 441 196 HOH HOH . 
G 5 HOH A 42 442 26 HOH HOH . 
G 5 HOH A 43 443 3 HOH HOH . 
G 5 HOH A 44 444 103 HOH HOH . 
G 5 HOH A 45 445 8 HOH HOH . 
G 5 HOH A 46 446 105 HOH HOH . 
G 5 HOH A 47 447 42 HOH HOH . 
G 5 HOH A 48 448 110 HOH HOH . 
G 5 HOH A 49 449 179 HOH HOH . 
G 5 HOH A 50 450 193 HOH HOH . 
G 5 HOH A 51 451 1 HOH HOH . 
G 5 HOH A 52 452 182 HOH HOH . 
G 5 HOH A 53 453 39 HOH HOH . 
G 5 HOH A 54 454 43 HOH HOH . 
G 5 HOH A 55 455 139 HOH HOH . 
G 5 HOH A 56 456 183 HOH HOH . 
G 5 HOH A 57 457 99 HOH HOH . 
G 5 HOH A 58 458 197 HOH HOH . 
G 5 HOH A 59 459 104 HOH HOH . 
G 5 HOH A 60 460 98 HOH HOH . 
G 5 HOH A 61 461 62 HOH HOH . 
G 5 HOH A 62 462 128 HOH HOH . 
G 5 HOH A 63 463 15 HOH HOH . 
G 5 HOH A 64 464 186 HOH HOH . 
G 5 HOH A 65 465 85 HOH HOH . 
G 5 HOH A 66 466 28 HOH HOH . 
G 5 HOH A 67 467 187 HOH HOH . 
G 5 HOH A 68 468 55 HOH HOH . 
G 5 HOH A 69 469 118 HOH HOH . 
G 5 HOH A 70 470 25 HOH HOH . 
G 5 HOH A 71 471 34 HOH HOH . 
G 5 HOH A 72 472 116 HOH HOH . 
G 5 HOH A 73 473 166 HOH HOH . 
G 5 HOH A 74 474 22 HOH HOH . 
G 5 HOH A 75 475 149 HOH HOH . 
G 5 HOH A 76 476 146 HOH HOH . 
G 5 HOH A 77 477 2 HOH HOH . 
G 5 HOH A 78 478 40 HOH HOH . 
G 5 HOH A 79 479 158 HOH HOH . 
G 5 HOH A 80 480 137 HOH HOH . 
G 5 HOH A 81 481 121 HOH HOH . 
G 5 HOH A 82 482 17 HOH HOH . 
G 5 HOH A 83 483 127 HOH HOH . 
G 5 HOH A 84 484 161 HOH HOH . 
G 5 HOH A 85 485 38 HOH HOH . 
G 5 HOH A 86 486 155 HOH HOH . 
G 5 HOH A 87 487 12 HOH HOH . 
G 5 HOH A 88 488 102 HOH HOH . 
G 5 HOH A 89 489 45 HOH HOH . 
G 5 HOH A 90 490 56 HOH HOH . 
G 5 HOH A 91 491 125 HOH HOH . 
G 5 HOH A 92 492 63 HOH HOH . 
G 5 HOH A 93 493 31 HOH HOH . 
G 5 HOH A 94 494 37 HOH HOH . 
G 5 HOH A 95 495 106 HOH HOH . 
G 5 HOH A 96 496 153 HOH HOH . 
G 5 HOH A 97 497 58 HOH HOH . 
G 5 HOH A 98 498 66 HOH HOH . 
G 5 HOH A 99 499 65 HOH HOH . 
G 5 HOH A 100 500 46 HOH HOH . 
G 5 HOH A 101 501 59 HOH HOH . 
G 5 HOH A 102 502 194 HOH HOH . 
G 5 HOH A 103 503 30 HOH HOH . 
G 5 HOH A 104 504 21 HOH HOH . 
G 5 HOH A 105 505 5 HOH HOH . 
G 5 HOH A 106 506 138 HOH HOH . 
G 5 HOH A 107 507 152 HOH HOH . 
G 5 HOH A 108 508 72 HOH HOH . 
G 5 HOH A 109 509 50 HOH HOH . 
G 5 HOH A 110 510 96 HOH HOH . 
G 5 HOH A 111 511 191 HOH HOH . 
G 5 HOH A 112 512 173 HOH HOH . 
G 5 HOH A 113 513 64 HOH HOH . 
G 5 HOH A 114 514 170 HOH HOH . 
G 5 HOH A 115 515 176 HOH HOH . 
G 5 HOH A 116 516 126 HOH HOH . 
G 5 HOH A 117 517 141 HOH HOH . 
G 5 HOH A 118 518 122 HOH HOH . 
G 5 HOH A 119 519 88 HOH HOH . 
G 5 HOH A 120 520 129 HOH HOH . 
G 5 HOH A 121 521 175 HOH HOH . 
G 5 HOH A 122 522 169 HOH HOH . 
G 5 HOH A 123 523 111 HOH HOH . 
G 5 HOH A 124 524 184 HOH HOH . 
G 5 HOH A 125 525 131 HOH HOH . 
G 5 HOH A 126 526 16 HOH HOH . 
G 5 HOH A 127 527 123 HOH HOH . 
G 5 HOH A 128 528 119 HOH HOH . 
G 5 HOH A 129 529 90 HOH HOH . 
G 5 HOH A 130 530 44 HOH HOH . 
G 5 HOH A 131 531 29 HOH HOH . 
G 5 HOH A 132 532 192 HOH HOH . 
G 5 HOH A 133 533 172 HOH HOH . 
G 5 HOH A 134 534 174 HOH HOH . 
G 5 HOH A 135 535 132 HOH HOH . 
G 5 HOH A 136 536 190 HOH HOH . 
G 5 HOH A 137 537 52 HOH HOH . 
G 5 HOH A 138 538 57 HOH HOH . 
G 5 HOH A 139 539 188 HOH HOH . 
G 5 HOH A 140 540 148 HOH HOH . 
G 5 HOH A 141 541 165 HOH HOH . 
G 5 HOH A 142 542 130 HOH HOH . 
G 5 HOH A 143 543 171 HOH HOH . 
G 5 HOH A 144 544 68 HOH HOH . 
G 5 HOH A 145 545 164 HOH HOH . 
G 5 HOH A 146 546 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . E 3 62.727 -52.123 83.812 1 98.81 ? S DMS 304 A 1 
HETATM 2 O O DMS . . . E 3 61.987 -50.913 84.348 1 54.53 ? O DMS 304 A 1 
HETATM 3 C C1 DMS . . . E 3 64.278 -52.339 84.504 1 82.6 ? C1 DMS 304 A 1 
HETATM 4 C C2 DMS . . . E 3 62.039 -53.598 84.36 1 90.02 ? C2 DMS 304 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           585 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#