data_5QGU # _model_server_result.job_id zmD1HcTInPjrXJnVLi26Aw _model_server_result.datetime_utc '2024-12-30 18:39:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qgu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5QGU # _exptl.entry_id 5QGU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 245.36 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-tert-butylpiperidin-1-yl)(phenyl)methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QGU _cell.length_a 126.022 _cell.length_b 126.022 _cell.length_c 41.63 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QGU _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 87 A ARG 101 1_555 A N HYP 88 A HYP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C HYP 88 A HYP 102 1_555 A N HIS 89 A HIS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C VAL 94 A VAL 108 1_555 A N CSO 95 A CSO 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C CSO 95 A CSO 109 1_555 A N CYS 96 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C16 H23 N O' _chem_comp.formula_weight 245.36 _chem_comp.id H3G _chem_comp.mon_nstd_flag . _chem_comp.name (4-tert-butylpiperidin-1-yl)(phenyl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 H3G doub 158 n y C13 C12 H3G sing 159 n y C14 C15 H3G sing 160 n y C12 C11 H3G doub 161 n y C15 C16 H3G doub 162 n y C1 C2 H3G sing 163 n n C11 C16 H3G sing 164 n y C11 C10 H3G sing 165 n n C6 C7 H3G sing 166 n n C6 C5 H3G sing 167 n n C10 O1 H3G doub 168 n n C10 N1 H3G sing 169 n n C4 C2 H3G sing 170 n n C2 C5 H3G sing 171 n n C2 C3 H3G sing 172 n n C7 N1 H3G sing 173 n n N1 C8 H3G sing 174 n n C5 C9 H3G sing 175 n n C9 C8 H3G sing 176 n n C4 H1 H3G sing 177 n n C4 H2 H3G sing 178 n n C4 H3 H3G sing 179 n n C5 H4 H3G sing 180 n n C6 H5 H3G sing 181 n n C6 H6 H3G sing 182 n n C7 H7 H3G sing 183 n n C7 H8 H3G sing 184 n n C8 H9 H3G sing 185 n n C8 H10 H3G sing 186 n n C13 H11 H3G sing 187 n n C15 H12 H3G sing 188 n n C1 H13 H3G sing 189 n n C1 H14 H3G sing 190 n n C1 H15 H3G sing 191 n n C3 H16 H3G sing 192 n n C3 H17 H3G sing 193 n n C3 H18 H3G sing 194 n n C9 H19 H3G sing 195 n n C9 H20 H3G sing 196 n n C12 H21 H3G sing 197 n n C14 H22 H3G sing 198 n n C16 H23 H3G sing 199 n n # _atom_sites.entry_id 5QGU _atom_sites.fract_transf_matrix[1][1] 0.007935 _atom_sites.fract_transf_matrix[1][2] 0.004581 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024021 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 301 1 ACT ACT . C 2 ACT A 1 302 2 ACT ACT . D 3 DMS A 1 303 1 DMS DMS . E 3 DMS A 1 304 2 DMS DMS . F 4 H3G A 1 305 1 H3G LIG . G 5 HOH A 1 401 202 HOH HOH . G 5 HOH A 2 402 9 HOH HOH . G 5 HOH A 3 403 162 HOH HOH . G 5 HOH A 4 404 203 HOH HOH . G 5 HOH A 5 405 209 HOH HOH . G 5 HOH A 6 406 196 HOH HOH . G 5 HOH A 7 407 166 HOH HOH . G 5 HOH A 8 408 140 HOH HOH . G 5 HOH A 9 409 199 HOH HOH . G 5 HOH A 10 410 134 HOH HOH . G 5 HOH A 11 411 113 HOH HOH . G 5 HOH A 12 412 64 HOH HOH . G 5 HOH A 13 413 79 HOH HOH . G 5 HOH A 14 414 143 HOH HOH . G 5 HOH A 15 415 167 HOH HOH . G 5 HOH A 16 416 101 HOH HOH . G 5 HOH A 17 417 13 HOH HOH . G 5 HOH A 18 418 53 HOH HOH . G 5 HOH A 19 419 69 HOH HOH . G 5 HOH A 20 420 208 HOH HOH . G 5 HOH A 21 421 211 HOH HOH . G 5 HOH A 22 422 157 HOH HOH . G 5 HOH A 23 423 94 HOH HOH . G 5 HOH A 24 424 6 HOH HOH . G 5 HOH A 25 425 117 HOH HOH . G 5 HOH A 26 426 124 HOH HOH . G 5 HOH A 27 427 179 HOH HOH . G 5 HOH A 28 428 48 HOH HOH . G 5 HOH A 29 429 197 HOH HOH . G 5 HOH A 30 430 36 HOH HOH . G 5 HOH A 31 431 20 HOH HOH . G 5 HOH A 32 432 97 HOH HOH . G 5 HOH A 33 433 80 HOH HOH . G 5 HOH A 34 434 210 HOH HOH . G 5 HOH A 35 435 109 HOH HOH . G 5 HOH A 36 436 116 HOH HOH . G 5 HOH A 37 437 158 HOH HOH . G 5 HOH A 38 438 25 HOH HOH . G 5 HOH A 39 439 26 HOH HOH . G 5 HOH A 40 440 137 HOH HOH . G 5 HOH A 41 441 108 HOH HOH . G 5 HOH A 42 442 24 HOH HOH . G 5 HOH A 43 443 118 HOH HOH . G 5 HOH A 44 444 58 HOH HOH . G 5 HOH A 45 445 34 HOH HOH . G 5 HOH A 46 446 18 HOH HOH . G 5 HOH A 47 447 19 HOH HOH . G 5 HOH A 48 448 39 HOH HOH . G 5 HOH A 49 449 62 HOH HOH . G 5 HOH A 50 450 38 HOH HOH . G 5 HOH A 51 451 146 HOH HOH . G 5 HOH A 52 452 186 HOH HOH . G 5 HOH A 53 453 49 HOH HOH . G 5 HOH A 54 454 110 HOH HOH . G 5 HOH A 55 455 159 HOH HOH . G 5 HOH A 56 456 105 HOH HOH . G 5 HOH A 57 457 201 HOH HOH . G 5 HOH A 58 458 51 HOH HOH . G 5 HOH A 59 459 15 HOH HOH . G 5 HOH A 60 460 78 HOH HOH . G 5 HOH A 61 461 14 HOH HOH . G 5 HOH A 62 462 141 HOH HOH . G 5 HOH A 63 463 10 HOH HOH . G 5 HOH A 64 464 103 HOH HOH . G 5 HOH A 65 465 104 HOH HOH . G 5 HOH A 66 466 193 HOH HOH . G 5 HOH A 67 467 22 HOH HOH . G 5 HOH A 68 468 35 HOH HOH . G 5 HOH A 69 469 99 HOH HOH . G 5 HOH A 70 470 45 HOH HOH . G 5 HOH A 71 471 3 HOH HOH . G 5 HOH A 72 472 7 HOH HOH . G 5 HOH A 73 473 59 HOH HOH . G 5 HOH A 74 474 61 HOH HOH . G 5 HOH A 75 475 85 HOH HOH . G 5 HOH A 76 476 139 HOH HOH . G 5 HOH A 77 477 42 HOH HOH . G 5 HOH A 78 478 125 HOH HOH . G 5 HOH A 79 479 11 HOH HOH . G 5 HOH A 80 480 12 HOH HOH . G 5 HOH A 81 481 182 HOH HOH . G 5 HOH A 82 482 37 HOH HOH . G 5 HOH A 83 483 102 HOH HOH . G 5 HOH A 84 484 56 HOH HOH . G 5 HOH A 85 485 153 HOH HOH . G 5 HOH A 86 486 2 HOH HOH . G 5 HOH A 87 487 8 HOH HOH . G 5 HOH A 88 488 1 HOH HOH . G 5 HOH A 89 489 212 HOH HOH . G 5 HOH A 90 490 28 HOH HOH . G 5 HOH A 91 491 40 HOH HOH . G 5 HOH A 92 492 75 HOH HOH . G 5 HOH A 93 493 98 HOH HOH . G 5 HOH A 94 494 72 HOH HOH . G 5 HOH A 95 495 27 HOH HOH . G 5 HOH A 96 496 71 HOH HOH . G 5 HOH A 97 497 17 HOH HOH . G 5 HOH A 98 498 121 HOH HOH . G 5 HOH A 99 499 152 HOH HOH . G 5 HOH A 100 500 66 HOH HOH . G 5 HOH A 101 501 55 HOH HOH . G 5 HOH A 102 502 30 HOH HOH . G 5 HOH A 103 503 206 HOH HOH . G 5 HOH A 104 504 106 HOH HOH . G 5 HOH A 105 505 145 HOH HOH . G 5 HOH A 106 506 31 HOH HOH . G 5 HOH A 107 507 154 HOH HOH . G 5 HOH A 108 508 155 HOH HOH . G 5 HOH A 109 509 88 HOH HOH . G 5 HOH A 110 510 176 HOH HOH . G 5 HOH A 111 511 21 HOH HOH . G 5 HOH A 112 512 170 HOH HOH . G 5 HOH A 113 513 5 HOH HOH . G 5 HOH A 114 514 194 HOH HOH . G 5 HOH A 115 515 96 HOH HOH . G 5 HOH A 116 516 63 HOH HOH . G 5 HOH A 117 517 149 HOH HOH . G 5 HOH A 118 518 200 HOH HOH . G 5 HOH A 119 519 43 HOH HOH . G 5 HOH A 120 520 23 HOH HOH . G 5 HOH A 121 521 126 HOH HOH . G 5 HOH A 122 522 138 HOH HOH . G 5 HOH A 123 523 191 HOH HOH . G 5 HOH A 124 524 127 HOH HOH . G 5 HOH A 125 525 147 HOH HOH . G 5 HOH A 126 526 46 HOH HOH . G 5 HOH A 127 527 119 HOH HOH . G 5 HOH A 128 528 150 HOH HOH . G 5 HOH A 129 529 129 HOH HOH . G 5 HOH A 130 530 57 HOH HOH . G 5 HOH A 131 531 111 HOH HOH . G 5 HOH A 132 532 122 HOH HOH . G 5 HOH A 133 533 173 HOH HOH . G 5 HOH A 134 534 174 HOH HOH . G 5 HOH A 135 535 169 HOH HOH . G 5 HOH A 136 536 172 HOH HOH . G 5 HOH A 137 537 16 HOH HOH . G 5 HOH A 138 538 161 HOH HOH . G 5 HOH A 139 539 205 HOH HOH . G 5 HOH A 140 540 177 HOH HOH . G 5 HOH A 141 541 144 HOH HOH . G 5 HOH A 142 542 204 HOH HOH . G 5 HOH A 143 543 178 HOH HOH . G 5 HOH A 144 544 44 HOH HOH . G 5 HOH A 145 545 50 HOH HOH . G 5 HOH A 146 546 192 HOH HOH . G 5 HOH A 147 547 168 HOH HOH . G 5 HOH A 148 548 123 HOH HOH . G 5 HOH A 149 549 131 HOH HOH . G 5 HOH A 150 550 29 HOH HOH . G 5 HOH A 151 551 133 HOH HOH . G 5 HOH A 152 552 52 HOH HOH . G 5 HOH A 153 553 190 HOH HOH . G 5 HOH A 154 554 93 HOH HOH . G 5 HOH A 155 555 184 HOH HOH . G 5 HOH A 156 556 54 HOH HOH . G 5 HOH A 157 557 188 HOH HOH . G 5 HOH A 158 558 185 HOH HOH . G 5 HOH A 159 559 195 HOH HOH . G 5 HOH A 160 560 207 HOH HOH . G 5 HOH A 161 561 132 HOH HOH . G 5 HOH A 162 562 130 HOH HOH . G 5 HOH A 163 563 165 HOH HOH . G 5 HOH A 164 564 171 HOH HOH . G 5 HOH A 165 565 148 HOH HOH . G 5 HOH A 166 566 68 HOH HOH . G 5 HOH A 167 567 164 HOH HOH . G 5 HOH A 168 568 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H3G . . . F 4 33.738 -44.464 75.291 0.49 34.74 ? N1 H3G 305 A 1 HETATM 2 C C4 H3G . . . F 4 38.559 -46.527 74.786 0.49 28.62 ? C4 H3G 305 A 1 HETATM 3 C C5 H3G . . . F 4 36.597 -45.043 75.487 0.49 32.53 ? C5 H3G 305 A 1 HETATM 4 C C6 H3G . . . F 4 35.638 -45.86 74.621 0.49 32.75 ? C6 H3G 305 A 1 HETATM 5 C C7 H3G . . . F 4 34.219 -45.841 75.158 0.49 33.94 ? C7 H3G 305 A 1 HETATM 6 C C8 H3G . . . F 4 34.603 -43.623 76.125 0.49 34.3 ? C8 H3G 305 A 1 HETATM 7 C C10 H3G . . . F 4 32.633 -43.957 74.732 0.49 34.11 ? C10 H3G 305 A 1 HETATM 8 C C13 H3G . . . F 4 31.365 -46.092 71.875 0.49 32.39 ? C13 H3G 305 A 1 HETATM 9 C C15 H3G . . . F 4 29.594 -45.795 73.44 0.49 33.65 ? C15 H3G 305 A 1 HETATM 10 C C1 H3G . . . F 4 38.24 -44.327 73.682 0.49 30.67 ? C1 H3G 305 A 1 HETATM 11 C C2 H3G . . . F 4 38.082 -45.086 75.006 0.49 30.55 ? C2 H3G 305 A 1 HETATM 12 C C3 H3G . . . F 4 39.011 -44.435 76.044 0.49 31.7 ? C3 H3G 305 A 1 HETATM 13 C C9 H3G . . . F 4 36.031 -43.63 75.61 0.49 32.79 ? C9 H3G 305 A 1 HETATM 14 O O1 H3G . . . F 4 32.328 -42.779 74.873 0.49 34.66 ? O1 H3G 305 A 1 HETATM 15 C C11 H3G . . . F 4 31.747 -44.819 73.878 0.49 33.22 ? C11 H3G 305 A 1 HETATM 16 C C12 H3G . . . F 4 32.205 -45.333 72.672 0.49 32.12 ? C12 H3G 305 A 1 HETATM 17 C C14 H3G . . . F 4 30.066 -46.327 72.263 0.49 32.57 ? C14 H3G 305 A 1 HETATM 18 C C16 H3G . . . F 4 30.423 -45.025 74.239 0.49 34 ? C16 H3G 305 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 18 #