data_5QH2 # _model_server_result.job_id 2JRSqXaElNY_jKq-qXuYvQ _model_server_result.datetime_utc '2025-01-10 10:49:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5QH2 # _exptl.entry_id 5QH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.274 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(3-methylphenyl)-N-(pyridin-3-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QH2 _cell.length_a 123.856 _cell.length_b 123.856 _cell.length_c 40.893 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 87 A ARG 101 1_555 A N HYP 88 A HYP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 A C HYP 88 A HYP 102 1_555 A N HIS 89 A HIS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A C VAL 94 A VAL 108 1_555 A N CSO 95 A CSO 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C CSO 95 A CSO 109 1_555 A N CYS 96 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C14 H14 N2 O' _chem_comp.formula_weight 226.274 _chem_comp.id H54 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(3-methylphenyl)-N-(pyridin-3-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 H54 doub 158 n y C11 C12 H54 sing 159 n y C10 C9 H54 sing 160 n y O1 C8 H54 doub 161 n n C12 N2 H54 doub 162 n y C8 C7 H54 sing 163 n n C8 N1 H54 sing 164 n n C9 N1 H54 sing 165 n n C9 C13 H54 doub 166 n y C7 C6 H54 sing 167 n n C5 C6 H54 doub 168 n y C5 C4 H54 sing 169 n y N2 C13 H54 sing 170 n y C6 C14 H54 sing 171 n y C4 C3 H54 doub 172 n y C14 C2 H54 doub 173 n y C3 C2 H54 sing 174 n y C2 C1 H54 sing 175 n n N1 H1 H54 sing 176 n n C4 H2 H54 sing 177 n n C5 H3 H54 sing 178 n n C7 H4 H54 sing 179 n n C7 H5 H54 sing 180 n n C10 H6 H54 sing 181 n n C13 H7 H54 sing 182 n n C1 H8 H54 sing 183 n n C1 H9 H54 sing 184 n n C1 H10 H54 sing 185 n n C3 H11 H54 sing 186 n n C11 H12 H54 sing 187 n n C12 H13 H54 sing 188 n n C14 H14 H54 sing 189 n n # _atom_sites.entry_id 5QH2 _atom_sites.fract_transf_matrix[1][1] 0.008074 _atom_sites.fract_transf_matrix[1][2] 0.004661 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 301 1 ACT ACT . C 2 ACT A 1 302 2 ACT ACT . D 3 DMS A 1 303 1 DMS DMS . E 3 DMS A 1 304 2 DMS DMS . F 4 H54 A 1 305 1 H54 LIG . G 5 HOH A 1 401 9 HOH HOH . G 5 HOH A 2 402 166 HOH HOH . G 5 HOH A 3 403 69 HOH HOH . G 5 HOH A 4 404 143 HOH HOH . G 5 HOH A 5 405 203 HOH HOH . G 5 HOH A 6 406 79 HOH HOH . G 5 HOH A 7 407 162 HOH HOH . G 5 HOH A 8 408 13 HOH HOH . G 5 HOH A 9 409 113 HOH HOH . G 5 HOH A 10 410 64 HOH HOH . G 5 HOH A 11 411 197 HOH HOH . G 5 HOH A 12 412 53 HOH HOH . G 5 HOH A 13 413 199 HOH HOH . G 5 HOH A 14 414 26 HOH HOH . G 5 HOH A 15 415 124 HOH HOH . G 5 HOH A 16 416 109 HOH HOH . G 5 HOH A 17 417 134 HOH HOH . G 5 HOH A 18 418 94 HOH HOH . G 5 HOH A 19 419 80 HOH HOH . G 5 HOH A 20 420 167 HOH HOH . G 5 HOH A 21 421 140 HOH HOH . G 5 HOH A 22 422 15 HOH HOH . G 5 HOH A 23 423 101 HOH HOH . G 5 HOH A 24 424 105 HOH HOH . G 5 HOH A 25 425 48 HOH HOH . G 5 HOH A 26 426 19 HOH HOH . G 5 HOH A 27 427 35 HOH HOH . G 5 HOH A 28 428 97 HOH HOH . G 5 HOH A 29 429 117 HOH HOH . G 5 HOH A 30 430 108 HOH HOH . G 5 HOH A 31 431 6 HOH HOH . G 5 HOH A 32 432 118 HOH HOH . G 5 HOH A 33 433 62 HOH HOH . G 5 HOH A 34 434 102 HOH HOH . G 5 HOH A 35 435 157 HOH HOH . G 5 HOH A 36 436 146 HOH HOH . G 5 HOH A 37 437 20 HOH HOH . G 5 HOH A 38 438 10 HOH HOH . G 5 HOH A 39 439 202 HOH HOH . G 5 HOH A 40 440 104 HOH HOH . G 5 HOH A 41 441 137 HOH HOH . G 5 HOH A 42 442 36 HOH HOH . G 5 HOH A 43 443 25 HOH HOH . G 5 HOH A 44 444 116 HOH HOH . G 5 HOH A 45 445 153 HOH HOH . G 5 HOH A 46 446 14 HOH HOH . G 5 HOH A 47 447 139 HOH HOH . G 5 HOH A 48 448 182 HOH HOH . G 5 HOH A 49 449 24 HOH HOH . G 5 HOH A 50 450 38 HOH HOH . G 5 HOH A 51 451 103 HOH HOH . G 5 HOH A 52 452 125 HOH HOH . G 5 HOH A 53 453 59 HOH HOH . G 5 HOH A 54 454 39 HOH HOH . G 5 HOH A 55 455 179 HOH HOH . G 5 HOH A 56 456 201 HOH HOH . G 5 HOH A 57 457 193 HOH HOH . G 5 HOH A 58 458 186 HOH HOH . G 5 HOH A 59 459 34 HOH HOH . G 5 HOH A 60 460 12 HOH HOH . G 5 HOH A 61 461 158 HOH HOH . G 5 HOH A 62 462 61 HOH HOH . G 5 HOH A 63 463 99 HOH HOH . G 5 HOH A 64 464 22 HOH HOH . G 5 HOH A 65 465 7 HOH HOH . G 5 HOH A 66 466 49 HOH HOH . G 5 HOH A 67 467 46 HOH HOH . G 5 HOH A 68 468 152 HOH HOH . G 5 HOH A 69 469 51 HOH HOH . G 5 HOH A 70 470 58 HOH HOH . G 5 HOH A 71 471 1 HOH HOH . G 5 HOH A 72 472 176 HOH HOH . G 5 HOH A 73 473 200 HOH HOH . G 5 HOH A 74 474 8 HOH HOH . G 5 HOH A 75 475 110 HOH HOH . G 5 HOH A 76 476 56 HOH HOH . G 5 HOH A 77 477 37 HOH HOH . G 5 HOH A 78 478 154 HOH HOH . G 5 HOH A 79 479 85 HOH HOH . G 5 HOH A 80 480 45 HOH HOH . G 5 HOH A 81 481 2 HOH HOH . G 5 HOH A 82 482 55 HOH HOH . G 5 HOH A 83 483 28 HOH HOH . G 5 HOH A 84 484 42 HOH HOH . G 5 HOH A 85 485 96 HOH HOH . G 5 HOH A 86 486 170 HOH HOH . G 5 HOH A 87 487 31 HOH HOH . G 5 HOH A 88 488 98 HOH HOH . G 5 HOH A 89 489 208 HOH HOH . G 5 HOH A 90 490 159 HOH HOH . G 5 HOH A 91 491 75 HOH HOH . G 5 HOH A 92 492 71 HOH HOH . G 5 HOH A 93 493 78 HOH HOH . G 5 HOH A 94 494 27 HOH HOH . G 5 HOH A 95 495 17 HOH HOH . G 5 HOH A 96 496 30 HOH HOH . G 5 HOH A 97 497 121 HOH HOH . G 5 HOH A 98 498 106 HOH HOH . G 5 HOH A 99 499 72 HOH HOH . G 5 HOH A 100 500 141 HOH HOH . G 5 HOH A 101 501 23 HOH HOH . G 5 HOH A 102 502 43 HOH HOH . G 5 HOH A 103 503 5 HOH HOH . G 5 HOH A 104 504 149 HOH HOH . G 5 HOH A 105 505 21 HOH HOH . G 5 HOH A 106 506 88 HOH HOH . G 5 HOH A 107 507 147 HOH HOH . G 5 HOH A 108 508 138 HOH HOH . G 5 HOH A 109 509 145 HOH HOH . G 5 HOH A 110 510 206 HOH HOH . G 5 HOH A 111 511 111 HOH HOH . G 5 HOH A 112 512 50 HOH HOH . G 5 HOH A 113 513 191 HOH HOH . G 5 HOH A 114 514 63 HOH HOH . G 5 HOH A 115 515 119 HOH HOH . G 5 HOH A 116 516 155 HOH HOH . G 5 HOH A 117 517 194 HOH HOH . G 5 HOH A 118 518 126 HOH HOH . G 5 HOH A 119 519 57 HOH HOH . G 5 HOH A 120 520 178 HOH HOH . G 5 HOH A 121 521 122 HOH HOH . G 5 HOH A 122 522 196 HOH HOH . G 5 HOH A 123 523 129 HOH HOH . G 5 HOH A 124 524 44 HOH HOH . G 5 HOH A 125 525 16 HOH HOH . G 5 HOH A 126 526 161 HOH HOH . G 5 HOH A 127 527 150 HOH HOH . G 5 HOH A 128 528 205 HOH HOH . G 5 HOH A 129 529 172 HOH HOH . G 5 HOH A 130 530 173 HOH HOH . G 5 HOH A 131 531 66 HOH HOH . G 5 HOH A 132 532 204 HOH HOH . G 5 HOH A 133 533 169 HOH HOH . G 5 HOH A 134 534 177 HOH HOH . G 5 HOH A 135 535 174 HOH HOH . G 5 HOH A 136 536 144 HOH HOH . G 5 HOH A 137 537 207 HOH HOH . G 5 HOH A 138 538 184 HOH HOH . G 5 HOH A 139 539 29 HOH HOH . G 5 HOH A 140 540 123 HOH HOH . G 5 HOH A 141 541 192 HOH HOH . G 5 HOH A 142 542 168 HOH HOH . G 5 HOH A 143 543 52 HOH HOH . G 5 HOH A 144 544 127 HOH HOH . G 5 HOH A 145 545 93 HOH HOH . G 5 HOH A 146 546 190 HOH HOH . G 5 HOH A 147 547 188 HOH HOH . G 5 HOH A 148 548 195 HOH HOH . G 5 HOH A 149 549 171 HOH HOH . G 5 HOH A 150 550 131 HOH HOH . G 5 HOH A 151 551 132 HOH HOH . G 5 HOH A 152 552 185 HOH HOH . G 5 HOH A 153 553 163 HOH HOH . G 5 HOH A 154 554 148 HOH HOH . G 5 HOH A 155 555 165 HOH HOH . G 5 HOH A 156 556 130 HOH HOH . G 5 HOH A 157 557 68 HOH HOH . G 5 HOH A 158 558 164 HOH HOH . G 5 HOH A 159 559 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H54 . . . F 4 40.731 -42.484 74.02 0.39 33.51 ? N1 H54 305 A 1 HETATM 2 C C4 H54 . . . F 4 35.738 -44.683 75.267 0.39 45.51 ? C4 H54 305 A 1 HETATM 3 C C5 H54 . . . F 4 36.801 -44.608 74.389 0.39 44.81 ? C5 H54 305 A 1 HETATM 4 C C6 H54 . . . F 4 38.096 -44.492 74.871 0.39 42.43 ? C6 H54 305 A 1 HETATM 5 C C7 H54 . . . F 4 39.285 -44.412 73.943 0.39 39.61 ? C7 H54 305 A 1 HETATM 6 C C8 H54 . . . F 4 39.586 -43 73.515 0.39 37.7 ? C8 H54 305 A 1 HETATM 7 C C10 H54 . . . F 4 41.066 -40.586 72.517 0.39 29.06 ? C10 H54 305 A 1 HETATM 8 C C13 H54 . . . F 4 42.004 -40.536 74.703 0.39 27.71 ? C13 H54 305 A 1 HETATM 9 C C1 H54 . . . F 4 37.512 -44.534 78.622 0.39 48.02 ? C1 H54 305 A 1 HETATM 10 C C2 H54 . . . F 4 37.254 -44.551 77.135 0.39 44.5 ? C2 H54 305 A 1 HETATM 11 C C3 H54 . . . F 4 35.97 -44.657 76.628 0.39 46.35 ? C3 H54 305 A 1 HETATM 12 C C9 H54 . . . F 4 41.257 -41.21 73.744 0.39 29.87 ? C9 H54 305 A 1 HETATM 13 C C11 H54 . . . F 4 41.604 -39.33 72.316 0.39 28.13 ? C11 H54 305 A 1 HETATM 14 C C12 H54 . . . F 4 42.316 -38.745 73.324 0.39 29.46 ? C12 H54 305 A 1 HETATM 15 N N2 H54 . . . F 4 42.531 -39.332 74.504 0.39 26.1 ? N2 H54 305 A 1 HETATM 16 O O1 H54 . . . F 4 38.857 -42.403 72.736 0.39 39.46 ? O1 H54 305 A 1 HETATM 17 C C14 H54 . . . F 4 38.289 -44.465 76.246 0.39 42.94 ? C14 H54 305 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 17 #