data_5QH9
#
_model_server_result.job_id            NY9KxnLNEE77n2Z7qfAgwQ 
_model_server_result.datetime_utc      '2024-11-20 11:44:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qh9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    5QH9 
#
_exptl.entry_id    5QH9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              219.28 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[(2S)-2-(3-methoxyphenyl)pyrrolidin-1-yl]ethan-1-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5QH9 
_cell.length_a            124.671 
_cell.length_b            124.671 
_cell.length_c            41.174 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QH9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 59 A CYS 73 1_555 D C GZY . A GZY 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.714 ? 
covale ? covale2 A C ARG 87 A ARG 101 1_555 A N HYP 88 A HYP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? 
covale ? covale3 A C HYP 88 A HYP 102 1_555 A N HIS 89 A HIS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale4 A C VAL 94 A VAL 108 1_555 A N CSO 95 A CSO 109 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C VAL 94 A VAL 108 1_555 A N CSO 95 A CSO 109 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C CSO 95 A CSO 109 1_555 A N CYS 96 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C13 H17 N O2' 
_chem_comp.formula_weight    219.28 
_chem_comp.id                GZY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[(2S)-2-(3-methoxyphenyl)pyrrolidin-1-yl]ethan-1-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C10 GZY sing 149 n n 
O1 C11 GZY sing 150 n n 
C9 C10 GZY doub 151 n y 
C9 C8 GZY sing 152 n y 
C10 C12 GZY sing 153 n y 
C8 C7 GZY doub 154 n y 
C3 C4 GZY sing 155 n n 
C3 C2 GZY sing 156 n n 
C12 C6 GZY doub 157 n y 
C7 C6 GZY sing 158 n y 
C4 C5 GZY sing 159 n n 
C6 C5 GZY sing 160 n n 
C2 N GZY sing 161 n n 
C5 N GZY sing 162 n n 
N C1 GZY sing 163 n n 
C1 O GZY doub 164 n n 
C1 C GZY sing 165 n n 
C4 H1 GZY sing 166 n n 
C4 H2 GZY sing 167 n n 
C5 H3 GZY sing 168 n n 
C7 H4 GZY sing 169 n n 
C8 H5 GZY sing 170 n n 
C H6 GZY sing 171 n n 
C H7 GZY sing 172 n n 
C H8 GZY sing 173 n n 
C3 H9 GZY sing 174 n n 
C3 H10 GZY sing 175 n n 
C2 H11 GZY sing 176 n n 
C2 H12 GZY sing 177 n n 
C12 H13 GZY sing 178 n n 
C11 H14 GZY sing 179 n n 
C11 H15 GZY sing 180 n n 
C11 H16 GZY sing 181 n n 
C9 H17 GZY sing 182 n n 
#
_atom_sites.entry_id                     5QH9 
_atom_sites.fract_transf_matrix[1][1]    0.008021 
_atom_sites.fract_transf_matrix[1][2]    0.004631 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009262 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACT A 1 301 1 ACT ACT . 
C 2 ACT A 1 302 2 ACT ACT . 
D 3 GZY A 1 303 1 GZY LIG . 
E 4 HOH A 1 401 202 HOH HOH . 
E 4 HOH A 2 402 203 HOH HOH . 
E 4 HOH A 3 403 166 HOH HOH . 
E 4 HOH A 4 404 9 HOH HOH . 
E 4 HOH A 5 405 143 HOH HOH . 
E 4 HOH A 6 406 94 HOH HOH . 
E 4 HOH A 7 407 212 HOH HOH . 
E 4 HOH A 8 408 134 HOH HOH . 
E 4 HOH A 9 409 157 HOH HOH . 
E 4 HOH A 10 410 239 HOH HOH . 
E 4 HOH A 11 411 124 HOH HOH . 
E 4 HOH A 12 412 211 HOH HOH . 
E 4 HOH A 13 413 64 HOH HOH . 
E 4 HOH A 14 414 79 HOH HOH . 
E 4 HOH A 15 415 234 HOH HOH . 
E 4 HOH A 16 416 196 HOH HOH . 
E 4 HOH A 17 417 162 HOH HOH . 
E 4 HOH A 18 418 25 HOH HOH . 
E 4 HOH A 19 419 69 HOH HOH . 
E 4 HOH A 20 420 222 HOH HOH . 
E 4 HOH A 21 421 11 HOH HOH . 
E 4 HOH A 22 422 199 HOH HOH . 
E 4 HOH A 23 423 13 HOH HOH . 
E 4 HOH A 24 424 236 HOH HOH . 
E 4 HOH A 25 425 19 HOH HOH . 
E 4 HOH A 26 426 113 HOH HOH . 
E 4 HOH A 27 427 213 HOH HOH . 
E 4 HOH A 28 428 167 HOH HOH . 
E 4 HOH A 29 429 230 HOH HOH . 
E 4 HOH A 30 430 109 HOH HOH . 
E 4 HOH A 31 431 158 HOH HOH . 
E 4 HOH A 32 432 140 HOH HOH . 
E 4 HOH A 33 433 61 HOH HOH . 
E 4 HOH A 34 434 38 HOH HOH . 
E 4 HOH A 35 435 145 HOH HOH . 
E 4 HOH A 36 436 101 HOH HOH . 
E 4 HOH A 37 437 232 HOH HOH . 
E 4 HOH A 38 438 36 HOH HOH . 
E 4 HOH A 39 439 39 HOH HOH . 
E 4 HOH A 40 440 118 HOH HOH . 
E 4 HOH A 41 441 108 HOH HOH . 
E 4 HOH A 42 442 179 HOH HOH . 
E 4 HOH A 43 443 105 HOH HOH . 
E 4 HOH A 44 444 235 HOH HOH . 
E 4 HOH A 45 445 117 HOH HOH . 
E 4 HOH A 46 446 6 HOH HOH . 
E 4 HOH A 47 447 137 HOH HOH . 
E 4 HOH A 48 448 10 HOH HOH . 
E 4 HOH A 49 449 97 HOH HOH . 
E 4 HOH A 50 450 78 HOH HOH . 
E 4 HOH A 51 451 227 HOH HOH . 
E 4 HOH A 52 452 110 HOH HOH . 
E 4 HOH A 53 453 53 HOH HOH . 
E 4 HOH A 54 454 14 HOH HOH . 
E 4 HOH A 55 455 26 HOH HOH . 
E 4 HOH A 56 456 197 HOH HOH . 
E 4 HOH A 57 457 224 HOH HOH . 
E 4 HOH A 58 458 62 HOH HOH . 
E 4 HOH A 59 459 228 HOH HOH . 
E 4 HOH A 60 460 201 HOH HOH . 
E 4 HOH A 61 461 215 HOH HOH . 
E 4 HOH A 62 462 3 HOH HOH . 
E 4 HOH A 63 463 20 HOH HOH . 
E 4 HOH A 64 464 193 HOH HOH . 
E 4 HOH A 65 465 23 HOH HOH . 
E 4 HOH A 66 466 15 HOH HOH . 
E 4 HOH A 67 467 208 HOH HOH . 
E 4 HOH A 68 468 206 HOH HOH . 
E 4 HOH A 69 469 71 HOH HOH . 
E 4 HOH A 70 470 35 HOH HOH . 
E 4 HOH A 71 471 1 HOH HOH . 
E 4 HOH A 72 472 104 HOH HOH . 
E 4 HOH A 73 473 99 HOH HOH . 
E 4 HOH A 74 474 34 HOH HOH . 
E 4 HOH A 75 475 186 HOH HOH . 
E 4 HOH A 76 476 226 HOH HOH . 
E 4 HOH A 77 477 48 HOH HOH . 
E 4 HOH A 78 478 18 HOH HOH . 
E 4 HOH A 79 479 51 HOH HOH . 
E 4 HOH A 80 480 66 HOH HOH . 
E 4 HOH A 81 481 12 HOH HOH . 
E 4 HOH A 82 482 146 HOH HOH . 
E 4 HOH A 83 483 219 HOH HOH . 
E 4 HOH A 84 484 102 HOH HOH . 
E 4 HOH A 85 485 22 HOH HOH . 
E 4 HOH A 86 486 72 HOH HOH . 
E 4 HOH A 87 487 153 HOH HOH . 
E 4 HOH A 88 488 37 HOH HOH . 
E 4 HOH A 89 489 103 HOH HOH . 
E 4 HOH A 90 490 49 HOH HOH . 
E 4 HOH A 91 491 58 HOH HOH . 
E 4 HOH A 92 492 80 HOH HOH . 
E 4 HOH A 93 493 237 HOH HOH . 
E 4 HOH A 94 494 40 HOH HOH . 
E 4 HOH A 95 495 116 HOH HOH . 
E 4 HOH A 96 496 225 HOH HOH . 
E 4 HOH A 97 497 231 HOH HOH . 
E 4 HOH A 98 498 85 HOH HOH . 
E 4 HOH A 99 499 75 HOH HOH . 
E 4 HOH A 100 500 59 HOH HOH . 
E 4 HOH A 101 501 28 HOH HOH . 
E 4 HOH A 102 502 220 HOH HOH . 
E 4 HOH A 103 503 152 HOH HOH . 
E 4 HOH A 104 504 200 HOH HOH . 
E 4 HOH A 105 505 46 HOH HOH . 
E 4 HOH A 106 506 2 HOH HOH . 
E 4 HOH A 107 507 154 HOH HOH . 
E 4 HOH A 108 508 7 HOH HOH . 
E 4 HOH A 109 509 27 HOH HOH . 
E 4 HOH A 110 510 139 HOH HOH . 
E 4 HOH A 111 511 210 HOH HOH . 
E 4 HOH A 112 512 229 HOH HOH . 
E 4 HOH A 113 513 8 HOH HOH . 
E 4 HOH A 114 514 42 HOH HOH . 
E 4 HOH A 115 515 159 HOH HOH . 
E 4 HOH A 116 516 45 HOH HOH . 
E 4 HOH A 117 517 56 HOH HOH . 
E 4 HOH A 118 518 106 HOH HOH . 
E 4 HOH A 119 519 17 HOH HOH . 
E 4 HOH A 120 520 98 HOH HOH . 
E 4 HOH A 121 521 55 HOH HOH . 
E 4 HOH A 122 522 182 HOH HOH . 
E 4 HOH A 123 523 233 HOH HOH . 
E 4 HOH A 124 524 242 HOH HOH . 
E 4 HOH A 125 525 31 HOH HOH . 
E 4 HOH A 126 526 170 HOH HOH . 
E 4 HOH A 127 527 125 HOH HOH . 
E 4 HOH A 128 528 149 HOH HOH . 
E 4 HOH A 129 529 30 HOH HOH . 
E 4 HOH A 130 530 141 HOH HOH . 
E 4 HOH A 131 531 96 HOH HOH . 
E 4 HOH A 132 532 218 HOH HOH . 
E 4 HOH A 133 533 43 HOH HOH . 
E 4 HOH A 134 534 240 HOH HOH . 
E 4 HOH A 135 535 176 HOH HOH . 
E 4 HOH A 136 536 121 HOH HOH . 
E 4 HOH A 137 537 5 HOH HOH . 
E 4 HOH A 138 538 24 HOH HOH . 
E 4 HOH A 139 539 21 HOH HOH . 
E 4 HOH A 140 540 221 HOH HOH . 
E 4 HOH A 141 541 138 HOH HOH . 
E 4 HOH A 142 542 88 HOH HOH . 
E 4 HOH A 143 543 191 HOH HOH . 
E 4 HOH A 144 544 178 HOH HOH . 
E 4 HOH A 145 545 63 HOH HOH . 
E 4 HOH A 146 546 194 HOH HOH . 
E 4 HOH A 147 547 119 HOH HOH . 
E 4 HOH A 148 548 111 HOH HOH . 
E 4 HOH A 149 549 204 HOH HOH . 
E 4 HOH A 150 550 126 HOH HOH . 
E 4 HOH A 151 551 155 HOH HOH . 
E 4 HOH A 152 552 129 HOH HOH . 
E 4 HOH A 153 553 122 HOH HOH . 
E 4 HOH A 154 554 173 HOH HOH . 
E 4 HOH A 155 555 205 HOH HOH . 
E 4 HOH A 156 556 161 HOH HOH . 
E 4 HOH A 157 557 57 HOH HOH . 
E 4 HOH A 158 558 241 HOH HOH . 
E 4 HOH A 159 559 54 HOH HOH . 
E 4 HOH A 160 560 172 HOH HOH . 
E 4 HOH A 161 561 16 HOH HOH . 
E 4 HOH A 162 562 169 HOH HOH . 
E 4 HOH A 163 563 44 HOH HOH . 
E 4 HOH A 164 564 50 HOH HOH . 
E 4 HOH A 165 565 147 HOH HOH . 
E 4 HOH A 166 566 217 HOH HOH . 
E 4 HOH A 167 567 168 HOH HOH . 
E 4 HOH A 168 568 123 HOH HOH . 
E 4 HOH A 169 569 177 HOH HOH . 
E 4 HOH A 170 570 144 HOH HOH . 
E 4 HOH A 171 571 150 HOH HOH . 
E 4 HOH A 172 572 29 HOH HOH . 
E 4 HOH A 173 573 174 HOH HOH . 
E 4 HOH A 174 574 184 HOH HOH . 
E 4 HOH A 175 575 209 HOH HOH . 
E 4 HOH A 176 576 52 HOH HOH . 
E 4 HOH A 177 577 190 HOH HOH . 
E 4 HOH A 178 578 192 HOH HOH . 
E 4 HOH A 179 579 131 HOH HOH . 
E 4 HOH A 180 580 127 HOH HOH . 
E 4 HOH A 181 581 132 HOH HOH . 
E 4 HOH A 182 582 223 HOH HOH . 
E 4 HOH A 183 583 188 HOH HOH . 
E 4 HOH A 184 584 207 HOH HOH . 
E 4 HOH A 185 585 214 HOH HOH . 
E 4 HOH A 186 586 163 HOH HOH . 
E 4 HOH A 187 587 165 HOH HOH . 
E 4 HOH A 188 588 238 HOH HOH . 
E 4 HOH A 189 589 171 HOH HOH . 
E 4 HOH A 190 590 133 HOH HOH . 
E 4 HOH A 191 591 148 HOH HOH . 
E 4 HOH A 192 592 130 HOH HOH . 
E 4 HOH A 193 593 216 HOH HOH . 
E 4 HOH A 194 594 68 HOH HOH . 
E 4 HOH A 195 595 164 HOH HOH . 
E 4 HOH A 196 596 115 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 GZY . . . D 3 34.098 -42.732 75.295 1 45.87 ? C4 GZY 303 A 1 
HETATM 2 C C5 GZY . . . D 3 35.141 -43.288 76.262 1 45.95 ? C5 GZY 303 A 1 
HETATM 3 C C6 GZY . . . D 3 36.075 -44.152 75.463 1 44.33 ? C6 GZY 303 A 1 
HETATM 4 C C7 GZY . . . D 3 35.695 -45.456 75.112 1 43.97 ? C7 GZY 303 A 1 
HETATM 5 C C8 GZY . . . D 3 36.527 -46.279 74.348 1 41.44 ? C8 GZY 303 A 1 
HETATM 6 C C10 GZY . . . D 3 38.161 -44.553 74.259 1 43.72 ? C10 GZY 303 A 1 
HETATM 7 O O GZY . . . D 3 37.103 -43.242 78.241 1 38.87 ? O GZY 303 A 1 
HETATM 8 C C1 GZY . . . D 3 36.492 -42.078 77.953 1 38.84 ? C1 GZY 303 A 1 
HETATM 9 C C GZY . . . D 3 36.841 -40.97 78.676 1 34.92 ? C GZY 303 A 1 
HETATM 10 N N GZY . . . D 3 35.739 -42.061 76.855 1 40.64 ? N GZY 303 A 1 
HETATM 11 C C3 GZY . . . D 3 34.693 -41.424 74.826 1 45.97 ? C3 GZY 303 A 1 
HETATM 12 C C2 GZY . . . D 3 35.47 -40.89 76.028 1 45.27 ? C2 GZY 303 A 1 
HETATM 13 C C12 GZY . . . D 3 37.325 -43.705 75.024 1 45.59 ? C12 GZY 303 A 1 
HETATM 14 O O1 GZY . . . D 3 39.385 -44.121 73.853 1 42.41 ? O1 GZY 303 A 1 
HETATM 15 C C11 GZY . . . D 3 40.218 -43.515 74.823 1 39.16 ? C11 GZY 303 A 1 
HETATM 16 C C9 GZY . . . D 3 37.772 -45.844 73.921 1 40.3 ? C9 GZY 303 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#