data_5QHC # _model_server_result.job_id RnmmnQpRMOZwlXiK0Cd2Sw _model_server_result.datetime_utc '2025-01-10 10:40:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qhc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5QHC # _exptl.entry_id 5QHC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 303.278 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "1-[3'-(trifluoromethyl)[1,1'-biphenyl]-2-yl]-1,3-dihydro-2H-pyrrol-2-one" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QHC _cell.length_a 124.649 _cell.length_b 124.649 _cell.length_c 41.069 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QHC _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 87 A ARG 101 1_555 A N HYP 88 A HYP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C HYP 88 A HYP 102 1_555 A N HIS 89 A HIS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C VAL 94 A VAL 108 1_555 A N CSO 95 A CSO 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C CSO 95 A CSO 109 1_555 A N CYS 96 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C17 H12 F3 N O' _chem_comp.formula_weight 303.278 _chem_comp.id H2M _chem_comp.mon_nstd_flag . _chem_comp.name "1-[3'-(trifluoromethyl)[1,1'-biphenyl]-2-yl]-1,3-dihydro-2H-pyrrol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C8 H2M doub 158 n y C7 C6 H2M sing 159 n y C8 C9 H2M sing 160 n y C6 C5 H2M doub 161 n y F2 C16 H2M sing 162 n n C9 C10 H2M sing 163 n n C9 C4 H2M doub 164 n y F C16 H2M sing 165 n n C16 C14 H2M sing 166 n n C16 F1 H2M sing 167 n n C15 C10 H2M doub 168 n y C15 C14 H2M sing 169 n y C5 C4 H2M sing 170 n y C10 C11 H2M sing 171 n y C14 C13 H2M doub 172 n y C11 C12 H2M doub 173 n y C4 N H2M sing 174 n n C13 C12 H2M sing 175 n y O C2 H2M doub 176 n n N C2 H2M sing 177 n n N C3 H2M sing 178 n n C2 C1 H2M sing 179 n n C3 C H2M doub 180 n n C1 C H2M sing 181 n n C5 H1 H2M sing 182 n n C6 H2 H2M sing 183 n n C7 H3 H2M sing 184 n n C8 H4 H2M sing 185 n n C13 H5 H2M sing 186 n n C15 H6 H2M sing 187 n n C1 H7 H2M sing 188 n n C1 H8 H2M sing 189 n n C3 H9 H2M sing 190 n n C H10 H2M sing 191 n n C12 H11 H2M sing 192 n n C11 H12 H2M sing 193 n n # _atom_sites.entry_id 5QHC _atom_sites.fract_transf_matrix[1][1] 0.008023 _atom_sites.fract_transf_matrix[1][2] 0.004632 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 301 1 ACT ACT . C 2 ACT A 1 302 2 ACT ACT . D 3 DMS A 1 303 1 DMS DMS . E 3 DMS A 1 304 2 DMS DMS . F 4 H2M A 1 305 1 H2M LIG . G 5 HOH A 1 401 202 HOH HOH . G 5 HOH A 2 402 9 HOH HOH . G 5 HOH A 3 403 53 HOH HOH . G 5 HOH A 4 404 71 HOH HOH . G 5 HOH A 5 405 48 HOH HOH . G 5 HOH A 6 406 143 HOH HOH . G 5 HOH A 7 407 124 HOH HOH . G 5 HOH A 8 408 157 HOH HOH . G 5 HOH A 9 409 117 HOH HOH . G 5 HOH A 10 410 109 HOH HOH . G 5 HOH A 11 411 134 HOH HOH . G 5 HOH A 12 412 199 HOH HOH . G 5 HOH A 13 413 69 HOH HOH . G 5 HOH A 14 414 203 HOH HOH . G 5 HOH A 15 415 166 HOH HOH . G 5 HOH A 16 416 97 HOH HOH . G 5 HOH A 17 417 10 HOH HOH . G 5 HOH A 18 418 196 HOH HOH . G 5 HOH A 19 419 105 HOH HOH . G 5 HOH A 20 420 113 HOH HOH . G 5 HOH A 21 421 64 HOH HOH . G 5 HOH A 22 422 51 HOH HOH . G 5 HOH A 23 423 2 HOH HOH . G 5 HOH A 24 424 103 HOH HOH . G 5 HOH A 25 425 140 HOH HOH . G 5 HOH A 26 426 85 HOH HOH . G 5 HOH A 27 427 14 HOH HOH . G 5 HOH A 28 428 36 HOH HOH . G 5 HOH A 29 429 13 HOH HOH . G 5 HOH A 30 430 197 HOH HOH . G 5 HOH A 31 431 162 HOH HOH . G 5 HOH A 32 432 193 HOH HOH . G 5 HOH A 33 433 108 HOH HOH . G 5 HOH A 34 434 11 HOH HOH . G 5 HOH A 35 435 66 HOH HOH . G 5 HOH A 36 436 110 HOH HOH . G 5 HOH A 37 437 101 HOH HOH . G 5 HOH A 38 438 42 HOH HOH . G 5 HOH A 39 439 208 HOH HOH . G 5 HOH A 40 440 102 HOH HOH . G 5 HOH A 41 441 8 HOH HOH . G 5 HOH A 42 442 49 HOH HOH . G 5 HOH A 43 443 200 HOH HOH . G 5 HOH A 44 444 24 HOH HOH . G 5 HOH A 45 445 94 HOH HOH . G 5 HOH A 46 446 167 HOH HOH . G 5 HOH A 47 447 99 HOH HOH . G 5 HOH A 48 448 6 HOH HOH . G 5 HOH A 49 449 159 HOH HOH . G 5 HOH A 50 450 79 HOH HOH . G 5 HOH A 51 451 43 HOH HOH . G 5 HOH A 52 452 75 HOH HOH . G 5 HOH A 53 453 179 HOH HOH . G 5 HOH A 54 454 158 HOH HOH . G 5 HOH A 55 455 39 HOH HOH . G 5 HOH A 56 456 26 HOH HOH . G 5 HOH A 57 457 59 HOH HOH . G 5 HOH A 58 458 35 HOH HOH . G 5 HOH A 59 459 141 HOH HOH . G 5 HOH A 60 460 56 HOH HOH . G 5 HOH A 61 461 19 HOH HOH . G 5 HOH A 62 462 186 HOH HOH . G 5 HOH A 63 463 46 HOH HOH . G 5 HOH A 64 464 38 HOH HOH . G 5 HOH A 65 465 1 HOH HOH . G 5 HOH A 66 466 58 HOH HOH . G 5 HOH A 67 467 15 HOH HOH . G 5 HOH A 68 468 146 HOH HOH . G 5 HOH A 69 469 80 HOH HOH . G 5 HOH A 70 470 72 HOH HOH . G 5 HOH A 71 471 25 HOH HOH . G 5 HOH A 72 472 116 HOH HOH . G 5 HOH A 73 473 104 HOH HOH . G 5 HOH A 74 474 12 HOH HOH . G 5 HOH A 75 475 78 HOH HOH . G 5 HOH A 76 476 153 HOH HOH . G 5 HOH A 77 477 98 HOH HOH . G 5 HOH A 78 478 125 HOH HOH . G 5 HOH A 79 479 118 HOH HOH . G 5 HOH A 80 480 139 HOH HOH . G 5 HOH A 81 481 154 HOH HOH . G 5 HOH A 82 482 63 HOH HOH . G 5 HOH A 83 483 170 HOH HOH . G 5 HOH A 84 484 137 HOH HOH . G 5 HOH A 85 485 37 HOH HOH . G 5 HOH A 86 486 40 HOH HOH . G 5 HOH A 87 487 28 HOH HOH . G 5 HOH A 88 488 34 HOH HOH . G 5 HOH A 89 489 45 HOH HOH . G 5 HOH A 90 490 176 HOH HOH . G 5 HOH A 91 491 22 HOH HOH . G 5 HOH A 92 492 17 HOH HOH . G 5 HOH A 93 493 61 HOH HOH . G 5 HOH A 94 494 96 HOH HOH . G 5 HOH A 95 495 182 HOH HOH . G 5 HOH A 96 496 7 HOH HOH . G 5 HOH A 97 497 27 HOH HOH . G 5 HOH A 98 498 5 HOH HOH . G 5 HOH A 99 499 55 HOH HOH . G 5 HOH A 100 500 62 HOH HOH . G 5 HOH A 101 501 106 HOH HOH . G 5 HOH A 102 502 30 HOH HOH . G 5 HOH A 103 503 121 HOH HOH . G 5 HOH A 104 504 88 HOH HOH . G 5 HOH A 105 505 21 HOH HOH . G 5 HOH A 106 506 31 HOH HOH . G 5 HOH A 107 507 191 HOH HOH . G 5 HOH A 108 508 147 HOH HOH . G 5 HOH A 109 509 145 HOH HOH . G 5 HOH A 110 510 127 HOH HOH . G 5 HOH A 111 511 138 HOH HOH . G 5 HOH A 112 512 173 HOH HOH . G 5 HOH A 113 513 149 HOH HOH . G 5 HOH A 114 514 204 HOH HOH . G 5 HOH A 115 515 152 HOH HOH . G 5 HOH A 116 516 169 HOH HOH . G 5 HOH A 117 517 122 HOH HOH . G 5 HOH A 118 518 119 HOH HOH . G 5 HOH A 119 519 129 HOH HOH . G 5 HOH A 120 520 44 HOH HOH . G 5 HOH A 121 521 126 HOH HOH . G 5 HOH A 122 522 111 HOH HOH . G 5 HOH A 123 523 150 HOH HOH . G 5 HOH A 124 524 23 HOH HOH . G 5 HOH A 125 525 194 HOH HOH . G 5 HOH A 126 526 205 HOH HOH . G 5 HOH A 127 527 161 HOH HOH . G 5 HOH A 128 528 155 HOH HOH . G 5 HOH A 129 529 131 HOH HOH . G 5 HOH A 130 530 144 HOH HOH . G 5 HOH A 131 531 50 HOH HOH . G 5 HOH A 132 532 177 HOH HOH . G 5 HOH A 133 533 16 HOH HOH . G 5 HOH A 134 534 57 HOH HOH . G 5 HOH A 135 535 172 HOH HOH . G 5 HOH A 136 536 174 HOH HOH . G 5 HOH A 137 537 184 HOH HOH . G 5 HOH A 138 538 190 HOH HOH . G 5 HOH A 139 539 29 HOH HOH . G 5 HOH A 140 540 123 HOH HOH . G 5 HOH A 141 541 168 HOH HOH . G 5 HOH A 142 542 192 HOH HOH . G 5 HOH A 143 543 195 HOH HOH . G 5 HOH A 144 544 171 HOH HOH . G 5 HOH A 145 545 188 HOH HOH . G 5 HOH A 146 546 130 HOH HOH . G 5 HOH A 147 547 132 HOH HOH . G 5 HOH A 148 548 165 HOH HOH . G 5 HOH A 149 549 148 HOH HOH . G 5 HOH A 150 550 68 HOH HOH . G 5 HOH A 151 551 164 HOH HOH . G 5 HOH A 152 552 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 H2M . . . F 4 32.309 -44.567 74.451 0.44 33.25 ? C4 H2M 305 A 1 HETATM 2 C C5 H2M . . . F 4 31.027 -44.845 74.016 0.44 31.4 ? C5 H2M 305 A 1 HETATM 3 C C6 H2M . . . F 4 30.855 -45.382 72.755 0.44 32.92 ? C6 H2M 305 A 1 HETATM 4 C C7 H2M . . . F 4 31.951 -45.655 71.944 0.44 31.38 ? C7 H2M 305 A 1 HETATM 5 C C8 H2M . . . F 4 33.217 -45.367 72.406 0.44 31.85 ? C8 H2M 305 A 1 HETATM 6 C C10 H2M . . . F 4 34.678 -44.276 74.017 0.44 32.53 ? C10 H2M 305 A 1 HETATM 7 C C13 H2M . . . F 4 37.064 -42.993 74.453 0.44 32.91 ? C13 H2M 305 A 1 HETATM 8 C C15 H2M . . . F 4 35.834 -44.987 73.885 0.44 31.43 ? C15 H2M 305 A 1 HETATM 9 O O H2M . . . F 4 31.33 -42.188 75.685 0.44 45.04 ? O H2M 305 A 1 HETATM 10 C C2 H2M . . . F 4 32.046 -42.927 76.295 0.44 39.6 ? C2 H2M 305 A 1 HETATM 11 C C1 H2M . . . F 4 32.54 -42.757 77.722 0.44 39.97 ? C1 H2M 305 A 1 HETATM 12 N N H2M . . . F 4 32.578 -44.099 75.759 0.44 36.49 ? N H2M 305 A 1 HETATM 13 C C3 H2M . . . F 4 33.453 -44.82 76.705 0.44 36.01 ? C3 H2M 305 A 1 HETATM 14 C C H2M . . . F 4 33.578 -43.883 77.954 0.44 36.28 ? C H2M 305 A 1 HETATM 15 C C9 H2M . . . F 4 33.386 -44.798 73.636 0.44 32.94 ? C9 H2M 305 A 1 HETATM 16 C C14 H2M . . . F 4 36.997 -44.319 74.1 0.44 32.26 ? C14 H2M 305 A 1 HETATM 17 C C16 H2M . . . F 4 38.246 -45.029 73.86 0.44 32.51 ? C16 H2M 305 A 1 HETATM 18 F F2 H2M . . . F 4 38.743 -44.665 72.77 0.44 37.68 ? F2 H2M 305 A 1 HETATM 19 F F1 H2M . . . F 4 39.267 -44.722 74.712 0.44 34.98 ? F1 H2M 305 A 1 HETATM 20 F F H2M . . . F 4 38.106 -46.333 73.779 0.44 27.79 ? F H2M 305 A 1 HETATM 21 C C12 H2M . . . F 4 35.889 -42.294 74.617 0.44 33.44 ? C12 H2M 305 A 1 HETATM 22 C C11 H2M . . . F 4 34.692 -42.939 74.41 0.44 33.16 ? C11 H2M 305 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 22 #