data_5QHF # _model_server_result.job_id w-WSQciHidEX8BPwDLthuA _model_server_result.datetime_utc '2024-11-04 22:59:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5QHF # _exptl.entry_id 5QHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.412 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-methoxyphenyl)-N-{5-[2-oxo-2-(3-oxopiperazin-1-yl)ethoxy]pyridin-3-yl}acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QHF _cell.length_a 124.659 _cell.length_b 124.659 _cell.length_c 41.113 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 87 A ARG 101 1_555 A N HYP 88 A HYP 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 A C HYP 88 A HYP 102 1_555 A N HIS 89 A HIS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C VAL 94 A VAL 108 1_555 A N CSO 95 A CSO 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C CSO 95 A CSO 109 1_555 A N CYS 96 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C20 H22 N4 O5' _chem_comp.formula_weight 398.412 _chem_comp.id H1G _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-methoxyphenyl)-N-{5-[2-oxo-2-(3-oxopiperazin-1-yl)ethoxy]pyridin-3-yl}acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C15 H1G sing 158 n n N3 C16 H1G sing 159 n n C15 C14 H1G sing 160 n n O2 C16 H1G doub 161 n n C16 C17 H1G sing 162 n n C14 N2 H1G sing 163 n n C17 N2 H1G sing 164 n n N2 C13 H1G sing 165 n n C13 C12 H1G sing 166 n n C13 O3 H1G doub 167 n n C12 O1 H1G sing 168 n n O1 C9 H1G sing 169 n n C9 C8 H1G doub 170 n y C9 C10 H1G sing 171 n y C8 C7 H1G sing 172 n y O4 C6 H1G doub 173 n n C O H1G sing 174 n n C10 N1 H1G doub 175 n y C18 C19 H1G doub 176 n y C18 C4 H1G sing 177 n y C19 C1 H1G sing 178 n y C6 N H1G sing 179 n n C6 C5 H1G sing 180 n n C7 N H1G sing 181 n n C7 C11 H1G doub 182 n y C1 O H1G sing 183 n n C1 C2 H1G doub 184 n y C4 C5 H1G sing 185 n n C4 C3 H1G doub 186 n y N1 C11 H1G sing 187 n y C3 C2 H1G sing 188 n y N3 H1 H1G sing 189 n n C5 H2 H1G sing 190 n n C5 H3 H1G sing 191 n n C8 H4 H1G sing 192 n n C10 H5 H1G sing 193 n n C15 H6 H1G sing 194 n n C15 H7 H1G sing 195 n n C17 H8 H1G sing 196 n n C17 H9 H1G sing 197 n n C3 H10 H1G sing 198 n n C2 H11 H1G sing 199 n n C18 H12 H1G sing 200 n n C19 H13 H1G sing 201 n n C H14 H1G sing 202 n n C H15 H1G sing 203 n n C H16 H1G sing 204 n n N H17 H1G sing 205 n n C11 H18 H1G sing 206 n n C12 H19 H1G sing 207 n n C12 H20 H1G sing 208 n n C14 H21 H1G sing 209 n n C14 H22 H1G sing 210 n n # _atom_sites.entry_id 5QHF _atom_sites.fract_transf_matrix[1][1] 0.008022 _atom_sites.fract_transf_matrix[1][2] 0.004631 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009263 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 301 1 ACT ACT . C 2 ACT A 1 302 2 ACT ACT . D 3 DMS A 1 303 1 DMS DMS . E 3 DMS A 1 304 2 DMS DMS . F 4 H1G A 1 305 1 H1G LIG . G 5 HOH A 1 401 9 HOH HOH . G 5 HOH A 2 402 166 HOH HOH . G 5 HOH A 3 403 143 HOH HOH . G 5 HOH A 4 404 64 HOH HOH . G 5 HOH A 5 405 94 HOH HOH . G 5 HOH A 6 406 69 HOH HOH . G 5 HOH A 7 407 162 HOH HOH . G 5 HOH A 8 408 56 HOH HOH . G 5 HOH A 9 409 79 HOH HOH . G 5 HOH A 10 410 19 HOH HOH . G 5 HOH A 11 411 157 HOH HOH . G 5 HOH A 12 412 197 HOH HOH . G 5 HOH A 13 413 118 HOH HOH . G 5 HOH A 14 414 13 HOH HOH . G 5 HOH A 15 415 140 HOH HOH . G 5 HOH A 16 416 124 HOH HOH . G 5 HOH A 17 417 202 HOH HOH . G 5 HOH A 18 418 199 HOH HOH . G 5 HOH A 19 419 158 HOH HOH . G 5 HOH A 20 420 125 HOH HOH . G 5 HOH A 21 421 26 HOH HOH . G 5 HOH A 22 422 109 HOH HOH . G 5 HOH A 23 423 80 HOH HOH . G 5 HOH A 24 424 134 HOH HOH . G 5 HOH A 25 425 113 HOH HOH . G 5 HOH A 26 426 105 HOH HOH . G 5 HOH A 27 427 15 HOH HOH . G 5 HOH A 28 428 53 HOH HOH . G 5 HOH A 29 429 137 HOH HOH . G 5 HOH A 30 430 10 HOH HOH . G 5 HOH A 31 431 20 HOH HOH . G 5 HOH A 32 432 101 HOH HOH . G 5 HOH A 33 433 6 HOH HOH . G 5 HOH A 34 434 48 HOH HOH . G 5 HOH A 35 435 39 HOH HOH . G 5 HOH A 36 436 116 HOH HOH . G 5 HOH A 37 437 14 HOH HOH . G 5 HOH A 38 438 146 HOH HOH . G 5 HOH A 39 439 102 HOH HOH . G 5 HOH A 40 440 108 HOH HOH . G 5 HOH A 41 441 18 HOH HOH . G 5 HOH A 42 442 179 HOH HOH . G 5 HOH A 43 443 61 HOH HOH . G 5 HOH A 44 444 110 HOH HOH . G 5 HOH A 45 445 12 HOH HOH . G 5 HOH A 46 446 36 HOH HOH . G 5 HOH A 47 447 25 HOH HOH . G 5 HOH A 48 448 117 HOH HOH . G 5 HOH A 49 449 35 HOH HOH . G 5 HOH A 50 450 99 HOH HOH . G 5 HOH A 51 451 97 HOH HOH . G 5 HOH A 52 452 208 HOH HOH . G 5 HOH A 53 453 3 HOH HOH . G 5 HOH A 54 454 167 HOH HOH . G 5 HOH A 55 455 38 HOH HOH . G 5 HOH A 56 456 59 HOH HOH . G 5 HOH A 57 457 78 HOH HOH . G 5 HOH A 58 458 186 HOH HOH . G 5 HOH A 59 459 58 HOH HOH . G 5 HOH A 60 460 153 HOH HOH . G 5 HOH A 61 461 85 HOH HOH . G 5 HOH A 62 462 51 HOH HOH . G 5 HOH A 63 463 139 HOH HOH . G 5 HOH A 64 464 34 HOH HOH . G 5 HOH A 65 465 37 HOH HOH . G 5 HOH A 66 466 62 HOH HOH . G 5 HOH A 67 467 103 HOH HOH . G 5 HOH A 68 468 1 HOH HOH . G 5 HOH A 69 469 2 HOH HOH . G 5 HOH A 70 470 7 HOH HOH . G 5 HOH A 71 471 104 HOH HOH . G 5 HOH A 72 472 8 HOH HOH . G 5 HOH A 73 473 75 HOH HOH . G 5 HOH A 74 474 193 HOH HOH . G 5 HOH A 75 475 106 HOH HOH . G 5 HOH A 76 476 45 HOH HOH . G 5 HOH A 77 477 49 HOH HOH . G 5 HOH A 78 478 152 HOH HOH . G 5 HOH A 79 479 201 HOH HOH . G 5 HOH A 80 480 22 HOH HOH . G 5 HOH A 81 481 27 HOH HOH . G 5 HOH A 82 482 28 HOH HOH . G 5 HOH A 83 483 170 HOH HOH . G 5 HOH A 84 484 24 HOH HOH . G 5 HOH A 85 485 72 HOH HOH . G 5 HOH A 86 486 96 HOH HOH . G 5 HOH A 87 487 42 HOH HOH . G 5 HOH A 88 488 141 HOH HOH . G 5 HOH A 89 489 31 HOH HOH . G 5 HOH A 90 490 176 HOH HOH . G 5 HOH A 91 491 98 HOH HOH . G 5 HOH A 92 492 55 HOH HOH . G 5 HOH A 93 493 206 HOH HOH . G 5 HOH A 94 494 30 HOH HOH . G 5 HOH A 95 495 17 HOH HOH . G 5 HOH A 96 496 46 HOH HOH . G 5 HOH A 97 497 159 HOH HOH . G 5 HOH A 98 498 21 HOH HOH . G 5 HOH A 99 499 200 HOH HOH . G 5 HOH A 100 500 154 HOH HOH . G 5 HOH A 101 501 5 HOH HOH . G 5 HOH A 102 502 191 HOH HOH . G 5 HOH A 103 503 88 HOH HOH . G 5 HOH A 104 504 121 HOH HOH . G 5 HOH A 105 505 182 HOH HOH . G 5 HOH A 106 506 43 HOH HOH . G 5 HOH A 107 507 71 HOH HOH . G 5 HOH A 108 508 145 HOH HOH . G 5 HOH A 109 509 63 HOH HOH . G 5 HOH A 110 510 149 HOH HOH . G 5 HOH A 111 511 194 HOH HOH . G 5 HOH A 112 512 66 HOH HOH . G 5 HOH A 113 513 138 HOH HOH . G 5 HOH A 114 514 204 HOH HOH . G 5 HOH A 115 515 50 HOH HOH . G 5 HOH A 116 516 178 HOH HOH . G 5 HOH A 117 517 23 HOH HOH . G 5 HOH A 118 518 155 HOH HOH . G 5 HOH A 119 519 126 HOH HOH . G 5 HOH A 120 520 119 HOH HOH . G 5 HOH A 121 521 147 HOH HOH . G 5 HOH A 122 522 111 HOH HOH . G 5 HOH A 123 523 122 HOH HOH . G 5 HOH A 124 524 129 HOH HOH . G 5 HOH A 125 525 57 HOH HOH . G 5 HOH A 126 526 172 HOH HOH . G 5 HOH A 127 527 203 HOH HOH . G 5 HOH A 128 528 44 HOH HOH . G 5 HOH A 129 529 16 HOH HOH . G 5 HOH A 130 530 150 HOH HOH . G 5 HOH A 131 531 184 HOH HOH . G 5 HOH A 132 532 169 HOH HOH . G 5 HOH A 133 533 174 HOH HOH . G 5 HOH A 134 534 205 HOH HOH . G 5 HOH A 135 535 190 HOH HOH . G 5 HOH A 136 536 144 HOH HOH . G 5 HOH A 137 537 161 HOH HOH . G 5 HOH A 138 538 168 HOH HOH . G 5 HOH A 139 539 123 HOH HOH . G 5 HOH A 140 540 177 HOH HOH . G 5 HOH A 141 541 127 HOH HOH . G 5 HOH A 142 542 173 HOH HOH . G 5 HOH A 143 543 207 HOH HOH . G 5 HOH A 144 544 133 HOH HOH . G 5 HOH A 145 545 29 HOH HOH . G 5 HOH A 146 546 192 HOH HOH . G 5 HOH A 147 547 131 HOH HOH . G 5 HOH A 148 548 52 HOH HOH . G 5 HOH A 149 549 132 HOH HOH . G 5 HOH A 150 550 93 HOH HOH . G 5 HOH A 151 551 188 HOH HOH . G 5 HOH A 152 552 60 HOH HOH . G 5 HOH A 153 553 165 HOH HOH . G 5 HOH A 154 554 171 HOH HOH . G 5 HOH A 155 555 195 HOH HOH . G 5 HOH A 156 556 148 HOH HOH . G 5 HOH A 157 557 185 HOH HOH . G 5 HOH A 158 558 54 HOH HOH . G 5 HOH A 159 559 130 HOH HOH . G 5 HOH A 160 560 68 HOH HOH . G 5 HOH A 161 561 164 HOH HOH . G 5 HOH A 162 562 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H1G . . . F 4 42.845 -39.518 74.826 0.44 25.21 ? N1 H1G 305 A 1 HETATM 2 N N3 H1G . . . F 4 39.078 -39.165 66.101 0.44 43.12 ? N3 H1G 305 A 1 HETATM 3 C C4 H1G . . . F 4 38.135 -44.572 74.326 0.44 38.58 ? C4 H1G 305 A 1 HETATM 4 C C5 H1G . . . F 4 39.583 -44.329 74.523 0.44 34.34 ? C5 H1G 305 A 1 HETATM 5 C C6 H1G . . . F 4 39.952 -43.083 73.843 0.44 35.33 ? C6 H1G 305 A 1 HETATM 6 C C7 H1G . . . F 4 41.655 -41.339 73.952 0.44 29.73 ? C7 H1G 305 A 1 HETATM 7 C C8 H1G . . . F 4 41.515 -40.734 72.693 0.44 29.44 ? C8 H1G 305 A 1 HETATM 8 C C10 H1G . . . F 4 42.681 -38.884 73.614 0.44 31.38 ? C10 H1G 305 A 1 HETATM 9 C C13 H1G . . . F 4 40.305 -39.729 69.942 0.44 38.11 ? C13 H1G 305 A 1 HETATM 10 C C15 H1G . . . F 4 40.483 -39.072 66.489 0.44 42.34 ? C15 H1G 305 A 1 HETATM 11 C C17 H1G . . . F 4 38.444 -40.141 68.375 0.44 41.38 ? C17 H1G 305 A 1 HETATM 12 O O4 H1G . . . F 4 39.314 -42.649 72.886 0.44 37.56 ? O4 H1G 305 A 1 HETATM 13 C C3 H1G . . . F 4 37.225 -43.681 74.889 0.44 43.47 ? C3 H1G 305 A 1 HETATM 14 C C2 H1G . . . F 4 35.871 -43.94 74.915 0.44 42.51 ? C2 H1G 305 A 1 HETATM 15 C C18 H1G . . . F 4 37.679 -45.713 73.704 0.44 39.35 ? C18 H1G 305 A 1 HETATM 16 C C19 H1G . . . F 4 36.292 -45.969 73.71 0.44 40.94 ? C19 H1G 305 A 1 HETATM 17 C C1 H1G . . . F 4 35.417 -45.08 74.325 0.44 42.43 ? C1 H1G 305 A 1 HETATM 18 O O H1G . . . F 4 34.055 -45.253 74.391 0.44 41.81 ? O H1G 305 A 1 HETATM 19 C C H1G . . . F 4 33.435 -45.381 73.112 0.44 40.44 ? C H1G 305 A 1 HETATM 20 N N H1G . . . F 4 41.112 -42.499 74.363 0.44 30.42 ? N H1G 305 A 1 HETATM 21 C C11 H1G . . . F 4 42.362 -40.66 74.975 0.44 27.33 ? C11 H1G 305 A 1 HETATM 22 C C9 H1G . . . F 4 42.065 -39.447 72.554 0.44 30.63 ? C9 H1G 305 A 1 HETATM 23 O O1 H1G . . . F 4 41.967 -38.813 71.346 0.44 34.32 ? O1 H1G 305 A 1 HETATM 24 C C12 H1G . . . F 4 41.802 -39.609 70.19 0.44 32.8 ? C12 H1G 305 A 1 HETATM 25 O O3 H1G . . . F 4 39.506 -39.608 70.864 0.44 40.79 ? O3 H1G 305 A 1 HETATM 26 N N2 H1G . . . F 4 39.869 -39.993 68.647 0.44 39.42 ? N2 H1G 305 A 1 HETATM 27 C C16 H1G . . . F 4 38.09 -39.664 66.948 0.44 43.55 ? C16 H1G 305 A 1 HETATM 28 O O2 H1G . . . F 4 36.95 -39.724 66.518 0.44 47.25 ? O2 H1G 305 A 1 HETATM 29 C C14 H1G . . . F 4 40.798 -40.142 67.538 0.44 40.55 ? C14 H1G 305 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #