data_5QHL # _model_server_result.job_id gyBaez4y64_l2p8CIL8-0A _model_server_result.datetime_utc '2024-11-26 14:52:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":302}' # _entry.id 5QHL # _exptl.entry_id 5QHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.57 _cell.angle_gamma 90 _cell.entry_id 5QHL _cell.length_a 37.73 _cell.length_b 74.39 _cell.length_c 63.16 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5QHL _atom_sites.fract_transf_matrix[1][1] 0.026504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003053 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 301 1 IOD IOD . D 2 IOD A 1 302 2 IOD IOD . E 2 IOD A 1 303 3 IOD IOD . F 2 IOD A 1 304 4 IOD IOD . G 3 EDO A 1 305 1 EDO EDO . H 3 EDO A 1 306 5 EDO EDO . I 3 EDO A 1 307 6 EDO EDO . J 4 GQ7 A 1 308 1 GQ7 LIG . K 3 EDO B 1 301 2 EDO EDO . L 3 EDO B 1 302 7 EDO EDO . M 4 GQ7 B 1 303 2 GQ7 LIG . N 5 HOH A 1 401 24 HOH HOH . N 5 HOH A 2 402 272 HOH HOH . N 5 HOH A 3 403 247 HOH HOH . N 5 HOH A 4 404 14 HOH HOH . N 5 HOH A 5 405 240 HOH HOH . N 5 HOH A 6 406 146 HOH HOH . N 5 HOH A 7 407 68 HOH HOH . N 5 HOH A 8 408 204 HOH HOH . N 5 HOH A 9 409 79 HOH HOH . N 5 HOH A 10 410 108 HOH HOH . N 5 HOH A 11 411 70 HOH HOH . N 5 HOH A 12 412 172 HOH HOH . N 5 HOH A 13 413 99 HOH HOH . N 5 HOH A 14 414 84 HOH HOH . N 5 HOH A 15 415 5 HOH HOH . N 5 HOH A 16 416 98 HOH HOH . N 5 HOH A 17 417 83 HOH HOH . N 5 HOH A 18 418 61 HOH HOH . N 5 HOH A 19 419 150 HOH HOH . N 5 HOH A 20 420 140 HOH HOH . N 5 HOH A 21 421 133 HOH HOH . N 5 HOH A 22 422 21 HOH HOH . N 5 HOH A 23 423 91 HOH HOH . N 5 HOH A 24 424 278 HOH HOH . N 5 HOH A 25 425 15 HOH HOH . N 5 HOH A 26 426 63 HOH HOH . N 5 HOH A 27 427 16 HOH HOH . N 5 HOH A 28 428 277 HOH HOH . N 5 HOH A 29 429 22 HOH HOH . N 5 HOH A 30 430 175 HOH HOH . N 5 HOH A 31 431 59 HOH HOH . N 5 HOH A 32 432 53 HOH HOH . N 5 HOH A 33 433 48 HOH HOH . N 5 HOH A 34 434 254 HOH HOH . N 5 HOH A 35 435 3 HOH HOH . N 5 HOH A 36 436 13 HOH HOH . N 5 HOH A 37 437 10 HOH HOH . N 5 HOH A 38 438 107 HOH HOH . N 5 HOH A 39 439 30 HOH HOH . N 5 HOH A 40 440 6 HOH HOH . N 5 HOH A 41 441 55 HOH HOH . N 5 HOH A 42 442 270 HOH HOH . N 5 HOH A 43 443 226 HOH HOH . N 5 HOH A 44 444 112 HOH HOH . N 5 HOH A 45 445 52 HOH HOH . N 5 HOH A 46 446 101 HOH HOH . N 5 HOH A 47 447 164 HOH HOH . N 5 HOH A 48 448 51 HOH HOH . N 5 HOH A 49 449 110 HOH HOH . N 5 HOH A 50 450 257 HOH HOH . N 5 HOH A 51 451 114 HOH HOH . N 5 HOH A 52 452 185 HOH HOH . N 5 HOH A 53 453 37 HOH HOH . N 5 HOH A 54 454 153 HOH HOH . N 5 HOH A 55 455 151 HOH HOH . N 5 HOH A 56 456 89 HOH HOH . N 5 HOH A 57 457 194 HOH HOH . N 5 HOH A 58 458 250 HOH HOH . N 5 HOH A 59 459 25 HOH HOH . N 5 HOH A 60 460 259 HOH HOH . N 5 HOH A 61 461 195 HOH HOH . N 5 HOH A 62 462 35 HOH HOH . N 5 HOH A 63 463 123 HOH HOH . N 5 HOH A 64 464 32 HOH HOH . N 5 HOH A 65 465 82 HOH HOH . N 5 HOH A 66 466 136 HOH HOH . N 5 HOH A 67 467 29 HOH HOH . N 5 HOH A 68 468 121 HOH HOH . N 5 HOH A 69 469 220 HOH HOH . N 5 HOH A 70 470 148 HOH HOH . N 5 HOH A 71 471 71 HOH HOH . N 5 HOH A 72 472 102 HOH HOH . N 5 HOH A 73 473 7 HOH HOH . N 5 HOH A 74 474 251 HOH HOH . N 5 HOH A 75 475 217 HOH HOH . N 5 HOH A 76 476 73 HOH HOH . N 5 HOH A 77 477 125 HOH HOH . N 5 HOH A 78 478 12 HOH HOH . N 5 HOH A 79 479 199 HOH HOH . N 5 HOH A 80 480 170 HOH HOH . N 5 HOH A 81 481 241 HOH HOH . N 5 HOH A 82 482 103 HOH HOH . N 5 HOH A 83 483 214 HOH HOH . N 5 HOH A 84 484 176 HOH HOH . N 5 HOH A 85 485 193 HOH HOH . N 5 HOH A 86 486 120 HOH HOH . N 5 HOH A 87 487 243 HOH HOH . N 5 HOH A 88 488 31 HOH HOH . N 5 HOH A 89 489 129 HOH HOH . N 5 HOH A 90 490 2 HOH HOH . N 5 HOH A 91 491 45 HOH HOH . N 5 HOH A 92 492 88 HOH HOH . N 5 HOH A 93 493 139 HOH HOH . N 5 HOH A 94 494 168 HOH HOH . N 5 HOH A 95 495 26 HOH HOH . N 5 HOH A 96 496 208 HOH HOH . N 5 HOH A 97 497 56 HOH HOH . N 5 HOH A 98 498 205 HOH HOH . N 5 HOH A 99 499 233 HOH HOH . N 5 HOH A 100 500 190 HOH HOH . N 5 HOH A 101 501 192 HOH HOH . N 5 HOH A 102 502 81 HOH HOH . N 5 HOH A 103 503 46 HOH HOH . N 5 HOH A 104 504 182 HOH HOH . N 5 HOH A 105 505 157 HOH HOH . N 5 HOH A 106 506 44 HOH HOH . N 5 HOH A 107 507 155 HOH HOH . N 5 HOH A 108 508 260 HOH HOH . N 5 HOH A 109 509 152 HOH HOH . N 5 HOH A 110 510 197 HOH HOH . N 5 HOH A 111 511 203 HOH HOH . N 5 HOH A 112 512 188 HOH HOH . N 5 HOH A 113 513 232 HOH HOH . N 5 HOH A 114 514 166 HOH HOH . N 5 HOH A 115 515 165 HOH HOH . N 5 HOH A 116 516 202 HOH HOH . N 5 HOH A 117 517 169 HOH HOH . N 5 HOH A 118 518 143 HOH HOH . N 5 HOH A 119 519 236 HOH HOH . N 5 HOH A 120 520 135 HOH HOH . N 5 HOH A 121 521 159 HOH HOH . N 5 HOH A 122 522 249 HOH HOH . N 5 HOH A 123 523 141 HOH HOH . N 5 HOH A 124 524 174 HOH HOH . N 5 HOH A 125 525 258 HOH HOH . N 5 HOH A 126 526 147 HOH HOH . N 5 HOH A 127 527 276 HOH HOH . N 5 HOH A 128 528 222 HOH HOH . N 5 HOH A 129 529 218 HOH HOH . N 5 HOH A 130 530 279 HOH HOH . N 5 HOH A 131 531 256 HOH HOH . N 5 HOH A 132 532 224 HOH HOH . N 5 HOH A 133 533 171 HOH HOH . N 5 HOH A 134 534 183 HOH HOH . N 5 HOH A 135 535 173 HOH HOH . O 5 HOH B 1 401 39 HOH HOH . O 5 HOH B 2 402 273 HOH HOH . O 5 HOH B 3 403 119 HOH HOH . O 5 HOH B 4 404 245 HOH HOH . O 5 HOH B 5 405 69 HOH HOH . O 5 HOH B 6 406 206 HOH HOH . O 5 HOH B 7 407 100 HOH HOH . O 5 HOH B 8 408 128 HOH HOH . O 5 HOH B 9 409 57 HOH HOH . O 5 HOH B 10 410 49 HOH HOH . O 5 HOH B 11 411 66 HOH HOH . O 5 HOH B 12 412 179 HOH HOH . O 5 HOH B 13 413 269 HOH HOH . O 5 HOH B 14 414 209 HOH HOH . O 5 HOH B 15 415 267 HOH HOH . O 5 HOH B 16 416 23 HOH HOH . O 5 HOH B 17 417 132 HOH HOH . O 5 HOH B 18 418 9 HOH HOH . O 5 HOH B 19 419 11 HOH HOH . O 5 HOH B 20 420 87 HOH HOH . O 5 HOH B 21 421 18 HOH HOH . O 5 HOH B 22 422 78 HOH HOH . O 5 HOH B 23 423 253 HOH HOH . O 5 HOH B 24 424 77 HOH HOH . O 5 HOH B 25 425 19 HOH HOH . O 5 HOH B 26 426 167 HOH HOH . O 5 HOH B 27 427 274 HOH HOH . O 5 HOH B 28 428 252 HOH HOH . O 5 HOH B 29 429 58 HOH HOH . O 5 HOH B 30 430 231 HOH HOH . O 5 HOH B 31 431 72 HOH HOH . O 5 HOH B 32 432 20 HOH HOH . O 5 HOH B 33 433 95 HOH HOH . O 5 HOH B 34 434 105 HOH HOH . O 5 HOH B 35 435 94 HOH HOH . O 5 HOH B 36 436 163 HOH HOH . O 5 HOH B 37 437 36 HOH HOH . O 5 HOH B 38 438 145 HOH HOH . O 5 HOH B 39 439 104 HOH HOH . O 5 HOH B 40 440 74 HOH HOH . O 5 HOH B 41 441 158 HOH HOH . O 5 HOH B 42 442 4 HOH HOH . O 5 HOH B 43 443 65 HOH HOH . O 5 HOH B 44 444 227 HOH HOH . O 5 HOH B 45 445 111 HOH HOH . O 5 HOH B 46 446 142 HOH HOH . O 5 HOH B 47 447 8 HOH HOH . O 5 HOH B 48 448 64 HOH HOH . O 5 HOH B 49 449 50 HOH HOH . O 5 HOH B 50 450 177 HOH HOH . O 5 HOH B 51 451 161 HOH HOH . O 5 HOH B 52 452 47 HOH HOH . O 5 HOH B 53 453 115 HOH HOH . O 5 HOH B 54 454 60 HOH HOH . O 5 HOH B 55 455 90 HOH HOH . O 5 HOH B 56 456 118 HOH HOH . O 5 HOH B 57 457 41 HOH HOH . O 5 HOH B 58 458 43 HOH HOH . O 5 HOH B 59 459 76 HOH HOH . O 5 HOH B 60 460 34 HOH HOH . O 5 HOH B 61 461 219 HOH HOH . O 5 HOH B 62 462 38 HOH HOH . O 5 HOH B 63 463 93 HOH HOH . O 5 HOH B 64 464 275 HOH HOH . O 5 HOH B 65 465 131 HOH HOH . O 5 HOH B 66 466 242 HOH HOH . O 5 HOH B 67 467 54 HOH HOH . O 5 HOH B 68 468 264 HOH HOH . O 5 HOH B 69 469 80 HOH HOH . O 5 HOH B 70 470 33 HOH HOH . O 5 HOH B 71 471 181 HOH HOH . O 5 HOH B 72 472 225 HOH HOH . O 5 HOH B 73 473 191 HOH HOH . O 5 HOH B 74 474 17 HOH HOH . O 5 HOH B 75 475 238 HOH HOH . O 5 HOH B 76 476 96 HOH HOH . O 5 HOH B 77 477 85 HOH HOH . O 5 HOH B 78 478 244 HOH HOH . O 5 HOH B 79 479 67 HOH HOH . O 5 HOH B 80 480 239 HOH HOH . O 5 HOH B 81 481 212 HOH HOH . O 5 HOH B 82 482 1 HOH HOH . O 5 HOH B 83 483 62 HOH HOH . O 5 HOH B 84 484 28 HOH HOH . O 5 HOH B 85 485 180 HOH HOH . O 5 HOH B 86 486 198 HOH HOH . O 5 HOH B 87 487 27 HOH HOH . O 5 HOH B 88 488 196 HOH HOH . O 5 HOH B 89 489 144 HOH HOH . O 5 HOH B 90 490 127 HOH HOH . O 5 HOH B 91 491 228 HOH HOH . O 5 HOH B 92 492 211 HOH HOH . O 5 HOH B 93 493 201 HOH HOH . O 5 HOH B 94 494 124 HOH HOH . O 5 HOH B 95 495 86 HOH HOH . O 5 HOH B 96 496 106 HOH HOH . O 5 HOH B 97 497 255 HOH HOH . O 5 HOH B 98 498 210 HOH HOH . O 5 HOH B 99 499 113 HOH HOH . O 5 HOH B 100 500 97 HOH HOH . O 5 HOH B 101 501 130 HOH HOH . O 5 HOH B 102 502 154 HOH HOH . O 5 HOH B 103 503 149 HOH HOH . O 5 HOH B 104 504 280 HOH HOH . O 5 HOH B 105 505 75 HOH HOH . O 5 HOH B 106 506 116 HOH HOH . O 5 HOH B 107 507 207 HOH HOH . O 5 HOH B 108 508 223 HOH HOH . O 5 HOH B 109 509 246 HOH HOH . O 5 HOH B 110 510 213 HOH HOH . O 5 HOH B 111 511 186 HOH HOH . O 5 HOH B 112 512 109 HOH HOH . O 5 HOH B 113 513 137 HOH HOH . O 5 HOH B 114 514 187 HOH HOH . O 5 HOH B 115 515 262 HOH HOH . O 5 HOH B 116 516 126 HOH HOH . O 5 HOH B 117 517 134 HOH HOH . O 5 HOH B 118 518 234 HOH HOH . O 5 HOH B 119 519 263 HOH HOH . O 5 HOH B 120 520 42 HOH HOH . O 5 HOH B 121 521 122 HOH HOH . O 5 HOH B 122 522 266 HOH HOH . O 5 HOH B 123 523 216 HOH HOH . O 5 HOH B 124 524 200 HOH HOH . O 5 HOH B 125 525 235 HOH HOH . O 5 HOH B 126 526 230 HOH HOH . O 5 HOH B 127 527 92 HOH HOH . O 5 HOH B 128 528 138 HOH HOH . O 5 HOH B 129 529 221 HOH HOH . O 5 HOH B 130 530 268 HOH HOH . O 5 HOH B 131 531 117 HOH HOH . O 5 HOH B 132 532 162 HOH HOH . O 5 HOH B 133 533 160 HOH HOH . O 5 HOH B 134 534 184 HOH HOH . O 5 HOH B 135 535 237 HOH HOH . O 5 HOH B 136 536 229 HOH HOH . O 5 HOH B 137 537 215 HOH HOH . O 5 HOH B 138 538 248 HOH HOH . O 5 HOH B 139 539 189 HOH HOH . O 5 HOH B 140 540 265 HOH HOH . O 5 HOH B 141 541 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 3 -16.176 -47.291 69.546 1 46.87 ? C1 EDO 302 B 1 HETATM 2 O O1 EDO . . . L 3 -17.095 -46.361 70.091 1 51.88 ? O1 EDO 302 B 1 HETATM 3 C C2 EDO . . . L 3 -16.102 -47.059 68.054 1 54.48 ? C2 EDO 302 B 1 HETATM 4 O O2 EDO . . . L 3 -15.65 -45.728 67.786 1 55.92 ? O2 EDO 302 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #