data_5QHM # _model_server_result.job_id 7Al4J9JLcdQVJB1Bi-kn6A _model_server_result.datetime_utc '2024-11-14 03:52:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qhm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5QHM # _exptl.entry_id 5QHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QHM _cell.length_a 50.6 _cell.length_b 50.6 _cell.length_c 153.268 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z+3/4 0 1 0 1 0 0 0 0 -1 -50.6 50.6 114.951 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 167 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 167 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 167 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 167 _struct_conn.ptnr2_symmetry 5_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.134 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5QHM _atom_sites.fract_transf_matrix[1][1] 0.019763 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019763 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 3 GQA A 1 203 1 GQA LIG . E 4 HOH A 1 301 97 HOH HOH . E 4 HOH A 2 302 64 HOH HOH . E 4 HOH A 3 303 79 HOH HOH . E 4 HOH A 4 304 21 HOH HOH . E 4 HOH A 5 305 83 HOH HOH . E 4 HOH A 6 306 61 HOH HOH . E 4 HOH A 7 307 30 HOH HOH . E 4 HOH A 8 308 49 HOH HOH . E 4 HOH A 9 309 42 HOH HOH . E 4 HOH A 10 310 39 HOH HOH . E 4 HOH A 11 311 12 HOH HOH . E 4 HOH A 12 312 19 HOH HOH . E 4 HOH A 13 313 94 HOH HOH . E 4 HOH A 14 314 3 HOH HOH . E 4 HOH A 15 315 59 HOH HOH . E 4 HOH A 16 316 29 HOH HOH . E 4 HOH A 17 317 46 HOH HOH . E 4 HOH A 18 318 26 HOH HOH . E 4 HOH A 19 319 95 HOH HOH . E 4 HOH A 20 320 91 HOH HOH . E 4 HOH A 21 321 86 HOH HOH . E 4 HOH A 22 322 88 HOH HOH . E 4 HOH A 23 323 50 HOH HOH . E 4 HOH A 24 324 69 HOH HOH . E 4 HOH A 25 325 2 HOH HOH . E 4 HOH A 26 326 51 HOH HOH . E 4 HOH A 27 327 36 HOH HOH . E 4 HOH A 28 328 6 HOH HOH . E 4 HOH A 29 329 4 HOH HOH . E 4 HOH A 30 330 55 HOH HOH . E 4 HOH A 31 331 7 HOH HOH . E 4 HOH A 32 332 9 HOH HOH . E 4 HOH A 33 333 37 HOH HOH . E 4 HOH A 34 334 13 HOH HOH . E 4 HOH A 35 335 87 HOH HOH . E 4 HOH A 36 336 58 HOH HOH . E 4 HOH A 37 337 56 HOH HOH . E 4 HOH A 38 338 1 HOH HOH . E 4 HOH A 39 339 22 HOH HOH . E 4 HOH A 40 340 10 HOH HOH . E 4 HOH A 41 341 8 HOH HOH . E 4 HOH A 42 342 17 HOH HOH . E 4 HOH A 43 343 82 HOH HOH . E 4 HOH A 44 344 23 HOH HOH . E 4 HOH A 45 345 68 HOH HOH . E 4 HOH A 46 346 96 HOH HOH . E 4 HOH A 47 347 77 HOH HOH . E 4 HOH A 48 348 40 HOH HOH . E 4 HOH A 49 349 11 HOH HOH . E 4 HOH A 50 350 20 HOH HOH . E 4 HOH A 51 351 66 HOH HOH . E 4 HOH A 52 352 44 HOH HOH . E 4 HOH A 53 353 81 HOH HOH . E 4 HOH A 54 354 15 HOH HOH . E 4 HOH A 55 355 90 HOH HOH . E 4 HOH A 56 356 5 HOH HOH . E 4 HOH A 57 357 24 HOH HOH . E 4 HOH A 58 358 71 HOH HOH . E 4 HOH A 59 359 60 HOH HOH . E 4 HOH A 60 360 93 HOH HOH . E 4 HOH A 61 361 48 HOH HOH . E 4 HOH A 62 362 80 HOH HOH . E 4 HOH A 63 363 62 HOH HOH . E 4 HOH A 64 364 63 HOH HOH . E 4 HOH A 65 365 31 HOH HOH . E 4 HOH A 66 366 72 HOH HOH . E 4 HOH A 67 367 33 HOH HOH . E 4 HOH A 68 368 14 HOH HOH . E 4 HOH A 69 369 78 HOH HOH . E 4 HOH A 70 370 18 HOH HOH . E 4 HOH A 71 371 16 HOH HOH . E 4 HOH A 72 372 65 HOH HOH . E 4 HOH A 73 373 98 HOH HOH . E 4 HOH A 74 374 45 HOH HOH . E 4 HOH A 75 375 84 HOH HOH . E 4 HOH A 76 376 53 HOH HOH . E 4 HOH A 77 377 35 HOH HOH . E 4 HOH A 78 378 28 HOH HOH . E 4 HOH A 79 379 34 HOH HOH . E 4 HOH A 80 380 41 HOH HOH . E 4 HOH A 81 381 67 HOH HOH . E 4 HOH A 82 382 38 HOH HOH . E 4 HOH A 83 383 32 HOH HOH . E 4 HOH A 84 384 73 HOH HOH . E 4 HOH A 85 385 70 HOH HOH . E 4 HOH A 86 386 89 HOH HOH . E 4 HOH A 87 387 52 HOH HOH . E 4 HOH A 88 388 85 HOH HOH . E 4 HOH A 89 389 92 HOH HOH . E 4 HOH A 90 390 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 7.352 57.946 47.241 1 54.37 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . B 2 8.02 56.742 47.622 1 44.13 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . B 2 8.233 59.112 47.67 1 57.51 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . B 2 8.646 58.882 49.02 1 54.44 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 401 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #