data_5QHN # _model_server_result.job_id jqdhwNQGGduOz-2xZr2SQA _model_server_result.datetime_utc '2024-11-22 00:00:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qhn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5QHN # _exptl.entry_id 5QHN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.225 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2~{S},4~{R})-1-(furan-2-ylcarbonyl)-4-oxidanyl-pyrrolidine-2-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QHN _cell.length_a 50.541 _cell.length_b 50.541 _cell.length_c 153.152 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QHN _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z+3/4 0 1 0 1 0 0 0 0 -1 -50.541 50.541 114.864 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 167 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 167 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 167 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 167 _struct_conn.ptnr2_symmetry 5_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.986 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H13 N O5' _chem_comp.formula_weight 239.225 _chem_comp.id GQJ _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2~{S},4~{R})-1-(furan-2-ylcarbonyl)-4-oxidanyl-pyrrolidine-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 GQJ sing 138 n y C13 C14 GQJ doub 139 n y C12 C11 GQJ doub 140 n y C14 O15 GQJ sing 141 n y O16 C10 GQJ doub 142 n n C11 C10 GQJ sing 143 n n C11 O15 GQJ sing 144 n y C10 N09 GQJ sing 145 n n C01 O02 GQJ sing 146 n n O02 C03 GQJ sing 147 n n O17 C03 GQJ doub 148 n n C03 C04 GQJ sing 149 n n N09 C04 GQJ sing 150 n n N09 C08 GQJ sing 151 n n C04 C05 GQJ sing 152 n n C08 C06 GQJ sing 153 n n C05 C06 GQJ sing 154 n n O07 C06 GQJ sing 155 n n C13 H1 GQJ sing 156 n n C01 H2 GQJ sing 157 n n C01 H3 GQJ sing 158 n n C01 H4 GQJ sing 159 n n C04 H5 GQJ sing 160 n n C05 H6 GQJ sing 161 n n C05 H7 GQJ sing 162 n n C06 H8 GQJ sing 163 n n C08 H9 GQJ sing 164 n n C08 H10 GQJ sing 165 n n C12 H11 GQJ sing 166 n n C14 H12 GQJ sing 167 n n O07 H13 GQJ sing 168 n n # _atom_sites.entry_id 5QHN _atom_sites.fract_transf_matrix[1][1] 0.019786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 3 GQJ A 1 203 1 GQJ LIG . E 4 HOH A 1 301 49 HOH HOH . E 4 HOH A 2 302 60 HOH HOH . E 4 HOH A 3 303 59 HOH HOH . E 4 HOH A 4 304 50 HOH HOH . E 4 HOH A 5 305 51 HOH HOH . E 4 HOH A 6 306 34 HOH HOH . E 4 HOH A 7 307 61 HOH HOH . E 4 HOH A 8 308 6 HOH HOH . E 4 HOH A 9 309 86 HOH HOH . E 4 HOH A 10 310 30 HOH HOH . E 4 HOH A 11 311 42 HOH HOH . E 4 HOH A 12 312 68 HOH HOH . E 4 HOH A 13 313 79 HOH HOH . E 4 HOH A 14 314 39 HOH HOH . E 4 HOH A 15 315 12 HOH HOH . E 4 HOH A 16 316 58 HOH HOH . E 4 HOH A 17 317 26 HOH HOH . E 4 HOH A 18 318 3 HOH HOH . E 4 HOH A 19 319 29 HOH HOH . E 4 HOH A 20 320 9 HOH HOH . E 4 HOH A 21 321 13 HOH HOH . E 4 HOH A 22 322 28 HOH HOH . E 4 HOH A 23 323 19 HOH HOH . E 4 HOH A 24 324 22 HOH HOH . E 4 HOH A 25 325 14 HOH HOH . E 4 HOH A 26 326 64 HOH HOH . E 4 HOH A 27 327 88 HOH HOH . E 4 HOH A 28 328 55 HOH HOH . E 4 HOH A 29 329 2 HOH HOH . E 4 HOH A 30 330 78 HOH HOH . E 4 HOH A 31 331 4 HOH HOH . E 4 HOH A 32 332 46 HOH HOH . E 4 HOH A 33 333 10 HOH HOH . E 4 HOH A 34 334 95 HOH HOH . E 4 HOH A 35 335 82 HOH HOH . E 4 HOH A 36 336 71 HOH HOH . E 4 HOH A 37 337 1 HOH HOH . E 4 HOH A 38 338 48 HOH HOH . E 4 HOH A 39 339 17 HOH HOH . E 4 HOH A 40 340 66 HOH HOH . E 4 HOH A 41 341 94 HOH HOH . E 4 HOH A 42 342 45 HOH HOH . E 4 HOH A 43 343 37 HOH HOH . E 4 HOH A 44 344 80 HOH HOH . E 4 HOH A 45 345 23 HOH HOH . E 4 HOH A 46 346 36 HOH HOH . E 4 HOH A 47 347 96 HOH HOH . E 4 HOH A 48 348 8 HOH HOH . E 4 HOH A 49 349 93 HOH HOH . E 4 HOH A 50 350 91 HOH HOH . E 4 HOH A 51 351 11 HOH HOH . E 4 HOH A 52 352 7 HOH HOH . E 4 HOH A 53 353 77 HOH HOH . E 4 HOH A 54 354 16 HOH HOH . E 4 HOH A 55 355 40 HOH HOH . E 4 HOH A 56 356 24 HOH HOH . E 4 HOH A 57 357 5 HOH HOH . E 4 HOH A 58 358 15 HOH HOH . E 4 HOH A 59 359 84 HOH HOH . E 4 HOH A 60 360 44 HOH HOH . E 4 HOH A 61 361 53 HOH HOH . E 4 HOH A 62 362 31 HOH HOH . E 4 HOH A 63 363 90 HOH HOH . E 4 HOH A 64 364 21 HOH HOH . E 4 HOH A 65 365 87 HOH HOH . E 4 HOH A 66 366 70 HOH HOH . E 4 HOH A 67 367 41 HOH HOH . E 4 HOH A 68 368 63 HOH HOH . E 4 HOH A 69 369 67 HOH HOH . E 4 HOH A 70 370 81 HOH HOH . E 4 HOH A 71 371 25 HOH HOH . E 4 HOH A 72 372 56 HOH HOH . E 4 HOH A 73 373 20 HOH HOH . E 4 HOH A 74 374 62 HOH HOH . E 4 HOH A 75 375 83 HOH HOH . E 4 HOH A 76 376 74 HOH HOH . E 4 HOH A 77 377 65 HOH HOH . E 4 HOH A 78 378 32 HOH HOH . E 4 HOH A 79 379 85 HOH HOH . E 4 HOH A 80 380 33 HOH HOH . E 4 HOH A 81 381 52 HOH HOH . E 4 HOH A 82 382 89 HOH HOH . E 4 HOH A 83 383 69 HOH HOH . E 4 HOH A 84 384 38 HOH HOH . E 4 HOH A 85 385 92 HOH HOH . E 4 HOH A 86 386 73 HOH HOH . E 4 HOH A 87 387 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 GQJ . . . D 3 -9.011 48.305 74.377 0.62 38.39 ? C10 GQJ 203 A 1 HETATM 2 C C13 GQJ . . . D 3 -7.245 45.7 72.324 0.62 27.18 ? C13 GQJ 203 A 1 HETATM 3 C C01 GQJ . . . D 3 -8.537 53.578 75.474 0.62 38.53 ? C01 GQJ 203 A 1 HETATM 4 C C03 GQJ . . . D 3 -8.901 51.186 75.771 0.62 40.85 ? C03 GQJ 203 A 1 HETATM 5 C C04 GQJ . . . D 3 -9.722 49.928 76.239 0.62 44.19 ? C04 GQJ 203 A 1 HETATM 6 C C05 GQJ . . . D 3 -9.62 49.978 77.828 0.62 43.12 ? C05 GQJ 203 A 1 HETATM 7 C C06 GQJ . . . D 3 -9.378 48.512 78.212 0.62 41.51 ? C06 GQJ 203 A 1 HETATM 8 C C08 GQJ . . . D 3 -8.574 48.052 77.214 0.62 45.85 ? C08 GQJ 203 A 1 HETATM 9 C C11 GQJ . . . D 3 -8.239 47.105 73.811 0.62 33.98 ? C11 GQJ 203 A 1 HETATM 10 C C12 GQJ . . . D 3 -8.096 46.82 72.443 0.62 28.93 ? C12 GQJ 203 A 1 HETATM 11 C C14 GQJ . . . D 3 -6.87 45.343 73.586 0.62 31.89 ? C14 GQJ 203 A 1 HETATM 12 N N09 GQJ . . . D 3 -9.12 48.779 75.842 0.62 44.31 ? N09 GQJ 203 A 1 HETATM 13 O O02 GQJ . . . D 3 -9.417 52.511 75.564 0.62 46.25 ? O02 GQJ 203 A 1 HETATM 14 O O07 GQJ . . . D 3 -10.727 48.012 78.093 0.62 41.54 ? O07 GQJ 203 A 1 HETATM 15 O O15 GQJ . . . D 3 -7.453 46.232 74.444 0.62 33.77 ? O15 GQJ 203 A 1 HETATM 16 O O16 GQJ . . . D 3 -9.466 48.995 73.631 0.62 40.25 ? O16 GQJ 203 A 1 HETATM 17 O O17 GQJ . . . D 3 -7.787 51.095 75.604 0.62 40.39 ? O17 GQJ 203 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #