data_5QHO # _model_server_result.job_id f-r6PMV-gdEQoLNshkRYIQ _model_server_result.datetime_utc '2024-11-16 19:50:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5QHO # _exptl.entry_id 5QHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QHO _cell.length_a 50.52 _cell.length_b 50.52 _cell.length_c 152.856 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z+3/4 0 1 0 1 0 0 0 0 -1 -50.52 50.52 114.642 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 167 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 167 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 167 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 167 _struct_conn.ptnr2_symmetry 5_556 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.003 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5QHO _atom_sites.fract_transf_matrix[1][1] 0.019794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 2 EDO EDO . D 3 GOY A 1 203 1 GOY LIG . E 4 HOH A 1 301 21 HOH HOH . E 4 HOH A 2 302 64 HOH HOH . E 4 HOH A 3 303 79 HOH HOH . E 4 HOH A 4 304 97 HOH HOH . E 4 HOH A 5 305 61 HOH HOH . E 4 HOH A 6 306 56 HOH HOH . E 4 HOH A 7 307 49 HOH HOH . E 4 HOH A 8 308 28 HOH HOH . E 4 HOH A 9 309 30 HOH HOH . E 4 HOH A 10 310 68 HOH HOH . E 4 HOH A 11 311 98 HOH HOH . E 4 HOH A 12 312 42 HOH HOH . E 4 HOH A 13 313 51 HOH HOH . E 4 HOH A 14 314 46 HOH HOH . E 4 HOH A 15 315 58 HOH HOH . E 4 HOH A 16 316 59 HOH HOH . E 4 HOH A 17 317 39 HOH HOH . E 4 HOH A 18 318 19 HOH HOH . E 4 HOH A 19 319 2 HOH HOH . E 4 HOH A 20 320 95 HOH HOH . E 4 HOH A 21 321 86 HOH HOH . E 4 HOH A 22 322 12 HOH HOH . E 4 HOH A 23 323 94 HOH HOH . E 4 HOH A 24 324 26 HOH HOH . E 4 HOH A 25 325 91 HOH HOH . E 4 HOH A 26 326 4 HOH HOH . E 4 HOH A 27 327 29 HOH HOH . E 4 HOH A 28 328 55 HOH HOH . E 4 HOH A 29 329 71 HOH HOH . E 4 HOH A 30 330 37 HOH HOH . E 4 HOH A 31 331 10 HOH HOH . E 4 HOH A 32 332 88 HOH HOH . E 4 HOH A 33 333 13 HOH HOH . E 4 HOH A 34 334 17 HOH HOH . E 4 HOH A 35 335 1 HOH HOH . E 4 HOH A 36 336 8 HOH HOH . E 4 HOH A 37 337 82 HOH HOH . E 4 HOH A 38 338 87 HOH HOH . E 4 HOH A 39 339 9 HOH HOH . E 4 HOH A 40 340 93 HOH HOH . E 4 HOH A 41 341 36 HOH HOH . E 4 HOH A 42 342 7 HOH HOH . E 4 HOH A 43 343 40 HOH HOH . E 4 HOH A 44 344 22 HOH HOH . E 4 HOH A 45 345 3 HOH HOH . E 4 HOH A 46 346 96 HOH HOH . E 4 HOH A 47 347 81 HOH HOH . E 4 HOH A 48 348 6 HOH HOH . E 4 HOH A 49 349 23 HOH HOH . E 4 HOH A 50 350 77 HOH HOH . E 4 HOH A 51 351 80 HOH HOH . E 4 HOH A 52 352 11 HOH HOH . E 4 HOH A 53 353 60 HOH HOH . E 4 HOH A 54 354 83 HOH HOH . E 4 HOH A 55 355 62 HOH HOH . E 4 HOH A 56 356 14 HOH HOH . E 4 HOH A 57 357 90 HOH HOH . E 4 HOH A 58 358 5 HOH HOH . E 4 HOH A 59 359 66 HOH HOH . E 4 HOH A 60 360 44 HOH HOH . E 4 HOH A 61 361 20 HOH HOH . E 4 HOH A 62 362 15 HOH HOH . E 4 HOH A 63 363 24 HOH HOH . E 4 HOH A 64 364 16 HOH HOH . E 4 HOH A 65 365 45 HOH HOH . E 4 HOH A 66 366 63 HOH HOH . E 4 HOH A 67 367 34 HOH HOH . E 4 HOH A 68 368 25 HOH HOH . E 4 HOH A 69 369 67 HOH HOH . E 4 HOH A 70 370 84 HOH HOH . E 4 HOH A 71 371 48 HOH HOH . E 4 HOH A 72 372 69 HOH HOH . E 4 HOH A 73 373 18 HOH HOH . E 4 HOH A 74 374 53 HOH HOH . E 4 HOH A 75 375 78 HOH HOH . E 4 HOH A 76 376 33 HOH HOH . E 4 HOH A 77 377 74 HOH HOH . E 4 HOH A 78 378 89 HOH HOH . E 4 HOH A 79 379 41 HOH HOH . E 4 HOH A 80 380 35 HOH HOH . E 4 HOH A 81 381 72 HOH HOH . E 4 HOH A 82 382 32 HOH HOH . E 4 HOH A 83 383 70 HOH HOH . E 4 HOH A 84 384 38 HOH HOH . E 4 HOH A 85 385 52 HOH HOH . E 4 HOH A 86 386 85 HOH HOH . E 4 HOH A 87 387 73 HOH HOH . E 4 HOH A 88 388 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 7.351 57.403 47.651 1 45.43 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . B 2 8.319 56.453 47.206 1 45.07 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . B 2 7.939 58.795 47.735 1 52.82 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . B 2 8.652 58.918 48.961 1 53.66 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #