data_5QHX
#
_model_server_result.job_id            BFDZh5thpp1mWId2gVwbGg 
_model_server_result.datetime_utc      '2025-01-25 07:55:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qhx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1404}' 
#
_entry.id    5QHX 
#
_exptl.entry_id    5QHX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              214.266 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}1-(4,6-dimethylpyrimidin-2-yl)benzene-1,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5QHX 
_cell.length_a            34.094 
_cell.length_b            41.358 
_cell.length_c            110.992 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QHX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C12 H14 N4' 
_chem_comp.formula_weight    214.266 
_chem_comp.id                GRY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}1-(4,6-dimethylpyrimidin-2-yl)benzene-1,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GRY sing 138 n n 
C11 C12 GRY doub 139 n y 
C11 C10 GRY sing 140 n y 
N3 C10 GRY sing 141 n n 
C12 C7 GRY sing 142 n y 
C10 C9 GRY doub 143 n y 
C2 N4 GRY doub 144 n y 
C2 C3 GRY sing 145 n y 
N4 C6 GRY sing 146 n y 
C3 C4 GRY doub 147 n y 
C7 N2 GRY sing 148 n n 
C7 C8 GRY doub 149 n y 
C9 C8 GRY sing 150 n y 
C6 N2 GRY sing 151 n n 
C6 N1 GRY doub 152 n y 
C4 N1 GRY sing 153 n y 
C4 C5 GRY sing 154 n n 
N3 H1 GRY sing 155 n n 
N3 H2 GRY sing 156 n n 
C5 H3 GRY sing 157 n n 
C5 H4 GRY sing 158 n n 
C5 H5 GRY sing 159 n n 
C8 H6 GRY sing 160 n n 
C1 H7 GRY sing 161 n n 
C1 H8 GRY sing 162 n n 
C1 H9 GRY sing 163 n n 
C3 H10 GRY sing 164 n n 
N2 H11 GRY sing 165 n n 
C9 H12 GRY sing 166 n n 
C11 H13 GRY sing 167 n n 
C12 H14 GRY sing 168 n n 
#
_atom_sites.entry_id                     5QHX 
_atom_sites.fract_transf_matrix[1][1]    0.029331 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00901 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 1401 1 CL CL . 
C 2 CL A 1 1402 2 CL CL . 
D 3 DMS A 1 1403 1 DMS DMS . 
E 4 GRY A 1 1404 1 GRY LIG . 
F 5 HOH A 1 1501 223 HOH HOH . 
F 5 HOH A 2 1502 19 HOH HOH . 
F 5 HOH A 3 1503 34 HOH HOH . 
F 5 HOH A 4 1504 195 HOH HOH . 
F 5 HOH A 5 1505 39 HOH HOH . 
F 5 HOH A 6 1506 53 HOH HOH . 
F 5 HOH A 7 1507 192 HOH HOH . 
F 5 HOH A 8 1508 16 HOH HOH . 
F 5 HOH A 9 1509 83 HOH HOH . 
F 5 HOH A 10 1510 55 HOH HOH . 
F 5 HOH A 11 1511 15 HOH HOH . 
F 5 HOH A 12 1512 207 HOH HOH . 
F 5 HOH A 13 1513 164 HOH HOH . 
F 5 HOH A 14 1514 170 HOH HOH . 
F 5 HOH A 15 1515 56 HOH HOH . 
F 5 HOH A 16 1516 42 HOH HOH . 
F 5 HOH A 17 1517 25 HOH HOH . 
F 5 HOH A 18 1518 28 HOH HOH . 
F 5 HOH A 19 1519 203 HOH HOH . 
F 5 HOH A 20 1520 150 HOH HOH . 
F 5 HOH A 21 1521 196 HOH HOH . 
F 5 HOH A 22 1522 116 HOH HOH . 
F 5 HOH A 23 1523 217 HOH HOH . 
F 5 HOH A 24 1524 213 HOH HOH . 
F 5 HOH A 25 1525 103 HOH HOH . 
F 5 HOH A 26 1526 210 HOH HOH . 
F 5 HOH A 27 1527 46 HOH HOH . 
F 5 HOH A 28 1528 23 HOH HOH . 
F 5 HOH A 29 1529 151 HOH HOH . 
F 5 HOH A 30 1530 62 HOH HOH . 
F 5 HOH A 31 1531 127 HOH HOH . 
F 5 HOH A 32 1532 47 HOH HOH . 
F 5 HOH A 33 1533 86 HOH HOH . 
F 5 HOH A 34 1534 79 HOH HOH . 
F 5 HOH A 35 1535 168 HOH HOH . 
F 5 HOH A 36 1536 98 HOH HOH . 
F 5 HOH A 37 1537 44 HOH HOH . 
F 5 HOH A 38 1538 177 HOH HOH . 
F 5 HOH A 39 1539 31 HOH HOH . 
F 5 HOH A 40 1540 64 HOH HOH . 
F 5 HOH A 41 1541 14 HOH HOH . 
F 5 HOH A 42 1542 173 HOH HOH . 
F 5 HOH A 43 1543 178 HOH HOH . 
F 5 HOH A 44 1544 84 HOH HOH . 
F 5 HOH A 45 1545 73 HOH HOH . 
F 5 HOH A 46 1546 139 HOH HOH . 
F 5 HOH A 47 1547 199 HOH HOH . 
F 5 HOH A 48 1548 63 HOH HOH . 
F 5 HOH A 49 1549 155 HOH HOH . 
F 5 HOH A 50 1550 70 HOH HOH . 
F 5 HOH A 51 1551 75 HOH HOH . 
F 5 HOH A 52 1552 58 HOH HOH . 
F 5 HOH A 53 1553 45 HOH HOH . 
F 5 HOH A 54 1554 107 HOH HOH . 
F 5 HOH A 55 1555 100 HOH HOH . 
F 5 HOH A 56 1556 167 HOH HOH . 
F 5 HOH A 57 1557 158 HOH HOH . 
F 5 HOH A 58 1558 147 HOH HOH . 
F 5 HOH A 59 1559 161 HOH HOH . 
F 5 HOH A 60 1560 67 HOH HOH . 
F 5 HOH A 61 1561 71 HOH HOH . 
F 5 HOH A 62 1562 22 HOH HOH . 
F 5 HOH A 63 1563 54 HOH HOH . 
F 5 HOH A 64 1564 81 HOH HOH . 
F 5 HOH A 65 1565 68 HOH HOH . 
F 5 HOH A 66 1566 136 HOH HOH . 
F 5 HOH A 67 1567 85 HOH HOH . 
F 5 HOH A 68 1568 35 HOH HOH . 
F 5 HOH A 69 1569 134 HOH HOH . 
F 5 HOH A 70 1570 202 HOH HOH . 
F 5 HOH A 71 1571 78 HOH HOH . 
F 5 HOH A 72 1572 142 HOH HOH . 
F 5 HOH A 73 1573 32 HOH HOH . 
F 5 HOH A 74 1574 57 HOH HOH . 
F 5 HOH A 75 1575 49 HOH HOH . 
F 5 HOH A 76 1576 65 HOH HOH . 
F 5 HOH A 77 1577 140 HOH HOH . 
F 5 HOH A 78 1578 29 HOH HOH . 
F 5 HOH A 79 1579 104 HOH HOH . 
F 5 HOH A 80 1580 198 HOH HOH . 
F 5 HOH A 81 1581 145 HOH HOH . 
F 5 HOH A 82 1582 106 HOH HOH . 
F 5 HOH A 83 1583 51 HOH HOH . 
F 5 HOH A 84 1584 193 HOH HOH . 
F 5 HOH A 85 1585 27 HOH HOH . 
F 5 HOH A 86 1586 95 HOH HOH . 
F 5 HOH A 87 1587 37 HOH HOH . 
F 5 HOH A 88 1588 20 HOH HOH . 
F 5 HOH A 89 1589 135 HOH HOH . 
F 5 HOH A 90 1590 48 HOH HOH . 
F 5 HOH A 91 1591 17 HOH HOH . 
F 5 HOH A 92 1592 215 HOH HOH . 
F 5 HOH A 93 1593 153 HOH HOH . 
F 5 HOH A 94 1594 113 HOH HOH . 
F 5 HOH A 95 1595 148 HOH HOH . 
F 5 HOH A 96 1596 33 HOH HOH . 
F 5 HOH A 97 1597 52 HOH HOH . 
F 5 HOH A 98 1598 114 HOH HOH . 
F 5 HOH A 99 1599 96 HOH HOH . 
F 5 HOH A 100 1600 141 HOH HOH . 
F 5 HOH A 101 1601 18 HOH HOH . 
F 5 HOH A 102 1602 109 HOH HOH . 
F 5 HOH A 103 1603 69 HOH HOH . 
F 5 HOH A 104 1604 26 HOH HOH . 
F 5 HOH A 105 1605 200 HOH HOH . 
F 5 HOH A 106 1606 13 HOH HOH . 
F 5 HOH A 107 1607 41 HOH HOH . 
F 5 HOH A 108 1608 212 HOH HOH . 
F 5 HOH A 109 1609 143 HOH HOH . 
F 5 HOH A 110 1610 59 HOH HOH . 
F 5 HOH A 111 1611 87 HOH HOH . 
F 5 HOH A 112 1612 110 HOH HOH . 
F 5 HOH A 113 1613 122 HOH HOH . 
F 5 HOH A 114 1614 90 HOH HOH . 
F 5 HOH A 115 1615 146 HOH HOH . 
F 5 HOH A 116 1616 133 HOH HOH . 
F 5 HOH A 117 1617 94 HOH HOH . 
F 5 HOH A 118 1618 77 HOH HOH . 
F 5 HOH A 119 1619 92 HOH HOH . 
F 5 HOH A 120 1620 137 HOH HOH . 
F 5 HOH A 121 1621 128 HOH HOH . 
F 5 HOH A 122 1622 93 HOH HOH . 
F 5 HOH A 123 1623 82 HOH HOH . 
F 5 HOH A 124 1624 189 HOH HOH . 
F 5 HOH A 125 1625 181 HOH HOH . 
F 5 HOH A 126 1626 220 HOH HOH . 
F 5 HOH A 127 1627 36 HOH HOH . 
F 5 HOH A 128 1628 97 HOH HOH . 
F 5 HOH A 129 1629 214 HOH HOH . 
F 5 HOH A 130 1630 221 HOH HOH . 
F 5 HOH A 131 1631 111 HOH HOH . 
F 5 HOH A 132 1632 7 HOH HOH . 
F 5 HOH A 133 1633 209 HOH HOH . 
F 5 HOH A 134 1634 88 HOH HOH . 
F 5 HOH A 135 1635 117 HOH HOH . 
F 5 HOH A 136 1636 101 HOH HOH . 
F 5 HOH A 137 1637 204 HOH HOH . 
F 5 HOH A 138 1638 1 HOH HOH . 
F 5 HOH A 139 1639 219 HOH HOH . 
F 5 HOH A 140 1640 160 HOH HOH . 
F 5 HOH A 141 1641 121 HOH HOH . 
F 5 HOH A 142 1642 43 HOH HOH . 
F 5 HOH A 143 1643 156 HOH HOH . 
F 5 HOH A 144 1644 183 HOH HOH . 
F 5 HOH A 145 1645 132 HOH HOH . 
F 5 HOH A 146 1646 5 HOH HOH . 
F 5 HOH A 147 1647 6 HOH HOH . 
F 5 HOH A 148 1648 190 HOH HOH . 
F 5 HOH A 149 1649 211 HOH HOH . 
F 5 HOH A 150 1650 205 HOH HOH . 
F 5 HOH A 151 1651 216 HOH HOH . 
F 5 HOH A 152 1652 201 HOH HOH . 
F 5 HOH A 153 1653 50 HOH HOH . 
F 5 HOH A 154 1654 91 HOH HOH . 
F 5 HOH A 155 1655 222 HOH HOH . 
F 5 HOH A 156 1656 218 HOH HOH . 
F 5 HOH A 157 1657 12 HOH HOH . 
F 5 HOH A 158 1658 2 HOH HOH . 
F 5 HOH A 159 1659 8 HOH HOH . 
F 5 HOH A 160 1660 80 HOH HOH . 
F 5 HOH A 161 1661 11 HOH HOH . 
F 5 HOH A 162 1662 9 HOH HOH . 
F 5 HOH A 163 1663 208 HOH HOH . 
F 5 HOH A 164 1664 182 HOH HOH . 
F 5 HOH A 165 1665 191 HOH HOH . 
F 5 HOH A 166 1666 123 HOH HOH . 
F 5 HOH A 167 1667 197 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 GRY . . . E 4 17.771 21.713 22.379 0.45 16.05 ? N1 GRY 1404 A 1 
HETATM 2 N N3 GRY . . . E 4 12.465 16.775 19.645 0.45 22.63 ? N3 GRY 1404 A 1 
HETATM 3 C C4 GRY . . . E 4 18.318 22.847 21.92 0.45 18.08 ? C4 GRY 1404 A 1 
HETATM 4 C C5 GRY . . . E 4 19.578 23.285 22.602 0.45 19.26 ? C5 GRY 1404 A 1 
HETATM 5 C C6 GRY . . . E 4 16.652 21.301 21.768 0.45 17.64 ? C6 GRY 1404 A 1 
HETATM 6 C C7 GRY . . . E 4 15.22 19.264 21.587 0.45 18.53 ? C7 GRY 1404 A 1 
HETATM 7 C C8 GRY . . . E 4 14.059 18.853 22.228 0.45 19.66 ? C8 GRY 1404 A 1 
HETATM 8 C C10 GRY . . . E 4 13.385 17.591 20.288 0.45 18.28 ? C10 GRY 1404 A 1 
HETATM 9 C C1 GRY . . . E 4 15.901 23.816 19.187 0.45 13.5 ? C1 GRY 1404 A 1 
HETATM 10 C C2 GRY . . . E 4 16.582 23.082 20.316 0.45 16 ? C2 GRY 1404 A 1 
HETATM 11 C C3 GRY . . . E 4 17.747 23.557 20.878 0.45 17.36 ? C3 GRY 1404 A 1 
HETATM 12 N N2 GRY . . . E 4 16.136 20.133 22.223 0.45 17.64 ? N2 GRY 1404 A 1 
HETATM 13 C C9 GRY . . . E 4 13.156 18.03 21.591 0.45 19.46 ? C9 GRY 1404 A 1 
HETATM 14 C C11 GRY . . . E 4 14.536 18.026 19.639 0.45 17.64 ? C11 GRY 1404 A 1 
HETATM 15 C C12 GRY . . . E 4 15.442 18.843 20.282 0.45 19.29 ? C12 GRY 1404 A 1 
HETATM 16 N N4 GRY . . . E 4 16.038 21.928 20.748 0.45 15.66 ? N4 GRY 1404 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           685 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           16 
#