data_5QIB # _model_server_result.job_id Ruf60e8SxZJPSWZkid9VCQ _model_server_result.datetime_utc '2025-02-24 19:00:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QIB # _exptl.entry_id 5QIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.245 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(cyclohexylamino)pyrimidine-2,4(1H,3H)-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QIB _cell.length_a 97.996 _cell.length_b 97.996 _cell.length_c 81.741 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N3 O2' _chem_comp.formula_weight 209.245 _chem_comp.id GX7 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(cyclohexylamino)pyrimidine-2,4(1H,3H)-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C2 GX7 doub 185 n n N C2 GX7 sing 186 n n N C3 GX7 sing 187 n n O1 C3 GX7 doub 188 n n C2 C1 GX7 sing 189 n n C3 N1 GX7 sing 190 n n C1 N2 GX7 sing 191 n n C1 C GX7 doub 192 n n N1 C GX7 sing 193 n n N2 C4 GX7 sing 194 n n C9 C4 GX7 sing 195 n n C9 C8 GX7 sing 196 n n C4 C5 GX7 sing 197 n n C5 C6 GX7 sing 198 n n C8 C7 GX7 sing 199 n n C6 C7 GX7 sing 200 n n C4 H1 GX7 sing 201 n n C5 H2 GX7 sing 202 n n C5 H3 GX7 sing 203 n n C6 H4 GX7 sing 204 n n C6 H5 GX7 sing 205 n n C7 H6 GX7 sing 206 n n C7 H7 GX7 sing 207 n n C8 H8 GX7 sing 208 n n C8 H9 GX7 sing 209 n n C H10 GX7 sing 210 n n N H11 GX7 sing 211 n n N2 H13 GX7 sing 212 n n C9 H15 GX7 sing 213 n n C9 H16 GX7 sing 214 n n N1 H17 GX7 sing 215 n n # _atom_sites.entry_id 5QIB _atom_sites.fract_transf_matrix[1][1] 0.010204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FNR A 1 401 1 FNR FMN . C 3 GX7 A 1 402 1 GX7 LIG . D 4 HOH A 1 501 24 HOH HOH . D 4 HOH A 2 502 91 HOH HOH . D 4 HOH A 3 503 21 HOH HOH . D 4 HOH A 4 504 67 HOH HOH . D 4 HOH A 5 505 47 HOH HOH . D 4 HOH A 6 506 35 HOH HOH . D 4 HOH A 7 507 36 HOH HOH . D 4 HOH A 8 508 71 HOH HOH . D 4 HOH A 9 509 99 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 97 HOH HOH . D 4 HOH A 12 512 98 HOH HOH . D 4 HOH A 13 513 65 HOH HOH . D 4 HOH A 14 514 122 HOH HOH . D 4 HOH A 15 515 27 HOH HOH . D 4 HOH A 16 516 33 HOH HOH . D 4 HOH A 17 517 29 HOH HOH . D 4 HOH A 18 518 111 HOH HOH . D 4 HOH A 19 519 87 HOH HOH . D 4 HOH A 20 520 113 HOH HOH . D 4 HOH A 21 521 15 HOH HOH . D 4 HOH A 22 522 2 HOH HOH . D 4 HOH A 23 523 55 HOH HOH . D 4 HOH A 24 524 132 HOH HOH . D 4 HOH A 25 525 104 HOH HOH . D 4 HOH A 26 526 56 HOH HOH . D 4 HOH A 27 527 54 HOH HOH . D 4 HOH A 28 528 51 HOH HOH . D 4 HOH A 29 529 40 HOH HOH . D 4 HOH A 30 530 32 HOH HOH . D 4 HOH A 31 531 112 HOH HOH . D 4 HOH A 32 532 110 HOH HOH . D 4 HOH A 33 533 10 HOH HOH . D 4 HOH A 34 534 19 HOH HOH . D 4 HOH A 35 535 43 HOH HOH . D 4 HOH A 36 536 9 HOH HOH . D 4 HOH A 37 537 14 HOH HOH . D 4 HOH A 38 538 5 HOH HOH . D 4 HOH A 39 539 126 HOH HOH . D 4 HOH A 40 540 128 HOH HOH . D 4 HOH A 41 541 61 HOH HOH . D 4 HOH A 42 542 134 HOH HOH . D 4 HOH A 43 543 34 HOH HOH . D 4 HOH A 44 544 75 HOH HOH . D 4 HOH A 45 545 13 HOH HOH . D 4 HOH A 46 546 89 HOH HOH . D 4 HOH A 47 547 80 HOH HOH . D 4 HOH A 48 548 28 HOH HOH . D 4 HOH A 49 549 7 HOH HOH . D 4 HOH A 50 550 106 HOH HOH . D 4 HOH A 51 551 46 HOH HOH . D 4 HOH A 52 552 31 HOH HOH . D 4 HOH A 53 553 20 HOH HOH . D 4 HOH A 54 554 68 HOH HOH . D 4 HOH A 55 555 69 HOH HOH . D 4 HOH A 56 556 11 HOH HOH . D 4 HOH A 57 557 130 HOH HOH . D 4 HOH A 58 558 25 HOH HOH . D 4 HOH A 59 559 37 HOH HOH . D 4 HOH A 60 560 4 HOH HOH . D 4 HOH A 61 561 48 HOH HOH . D 4 HOH A 62 562 118 HOH HOH . D 4 HOH A 63 563 125 HOH HOH . D 4 HOH A 64 564 52 HOH HOH . D 4 HOH A 65 565 17 HOH HOH . D 4 HOH A 66 566 86 HOH HOH . D 4 HOH A 67 567 78 HOH HOH . D 4 HOH A 68 568 77 HOH HOH . D 4 HOH A 69 569 44 HOH HOH . D 4 HOH A 70 570 1 HOH HOH . D 4 HOH A 71 571 49 HOH HOH . D 4 HOH A 72 572 62 HOH HOH . D 4 HOH A 73 573 58 HOH HOH . D 4 HOH A 74 574 92 HOH HOH . D 4 HOH A 75 575 74 HOH HOH . D 4 HOH A 76 576 114 HOH HOH . D 4 HOH A 77 577 38 HOH HOH . D 4 HOH A 78 578 117 HOH HOH . D 4 HOH A 79 579 50 HOH HOH . D 4 HOH A 80 580 72 HOH HOH . D 4 HOH A 81 581 108 HOH HOH . D 4 HOH A 82 582 90 HOH HOH . D 4 HOH A 83 583 85 HOH HOH . D 4 HOH A 84 584 41 HOH HOH . D 4 HOH A 85 585 18 HOH HOH . D 4 HOH A 86 586 66 HOH HOH . D 4 HOH A 87 587 95 HOH HOH . D 4 HOH A 88 588 107 HOH HOH . D 4 HOH A 89 589 60 HOH HOH . D 4 HOH A 90 590 70 HOH HOH . D 4 HOH A 91 591 59 HOH HOH . D 4 HOH A 92 592 64 HOH HOH . D 4 HOH A 93 593 105 HOH HOH . D 4 HOH A 94 594 116 HOH HOH . D 4 HOH A 95 595 57 HOH HOH . D 4 HOH A 96 596 124 HOH HOH . D 4 HOH A 97 597 81 HOH HOH . D 4 HOH A 98 598 94 HOH HOH . D 4 HOH A 99 599 45 HOH HOH . D 4 HOH A 100 600 39 HOH HOH . D 4 HOH A 101 601 12 HOH HOH . D 4 HOH A 102 602 121 HOH HOH . D 4 HOH A 103 603 23 HOH HOH . D 4 HOH A 104 604 6 HOH HOH . D 4 HOH A 105 605 82 HOH HOH . D 4 HOH A 106 606 109 HOH HOH . D 4 HOH A 107 607 42 HOH HOH . D 4 HOH A 108 608 73 HOH HOH . D 4 HOH A 109 609 101 HOH HOH . D 4 HOH A 110 610 88 HOH HOH . D 4 HOH A 111 611 96 HOH HOH . D 4 HOH A 112 612 22 HOH HOH . D 4 HOH A 113 613 93 HOH HOH . D 4 HOH A 114 614 127 HOH HOH . D 4 HOH A 115 615 120 HOH HOH . D 4 HOH A 116 616 84 HOH HOH . D 4 HOH A 117 617 8 HOH HOH . D 4 HOH A 118 618 123 HOH HOH . D 4 HOH A 119 619 102 HOH HOH . D 4 HOH A 120 620 53 HOH HOH . D 4 HOH A 121 621 79 HOH HOH . D 4 HOH A 122 622 100 HOH HOH . D 4 HOH A 123 623 83 HOH HOH . D 4 HOH A 124 624 138 HOH HOH . D 4 HOH A 125 625 30 HOH HOH . D 4 HOH A 126 626 133 HOH HOH . D 4 HOH A 127 627 16 HOH HOH . D 4 HOH A 128 628 103 HOH HOH . D 4 HOH A 129 629 129 HOH HOH . D 4 HOH A 130 630 131 HOH HOH . D 4 HOH A 131 631 3 HOH HOH . D 4 HOH A 132 632 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GX7 . C . C 3 5.268 30.345 23.496 0.18 16.46 ? N1 GX7 402 A 1 HETATM 2 N N1 GX7 . D . C 3 5.268 30.345 23.496 0.18 16.46 ? N1 GX7 402 A 1 HETATM 3 C C4 GX7 . C . C 3 4.786 34.013 25.269 0.18 25.01 ? C4 GX7 402 A 1 HETATM 4 C C4 GX7 . D . C 3 4.786 34.013 25.269 0.18 25.01 ? C4 GX7 402 A 1 HETATM 5 C C5 GX7 . C . C 3 5.098 35.32 25.982 0.18 25.31 ? C5 GX7 402 A 1 HETATM 6 C C5 GX7 . D . C 3 5.098 35.32 25.982 0.18 25.31 ? C5 GX7 402 A 1 HETATM 7 C C6 GX7 . C . C 3 4.692 35.057 27.437 0.18 26.34 ? C6 GX7 402 A 1 HETATM 8 C C6 GX7 . D . C 3 4.692 35.057 27.437 0.18 26.34 ? C6 GX7 402 A 1 HETATM 9 C C7 GX7 . C . C 3 3.215 34.658 27.565 0.18 26.14 ? C7 GX7 402 A 1 HETATM 10 C C7 GX7 . D . C 3 3.215 34.658 27.565 0.18 26.14 ? C7 GX7 402 A 1 HETATM 11 C C8 GX7 . C . C 3 2.493 34.534 26.203 0.18 25.82 ? C8 GX7 402 A 1 HETATM 12 C C8 GX7 . D . C 3 2.493 34.534 26.203 0.18 25.82 ? C8 GX7 402 A 1 HETATM 13 O O1 GX7 . C . C 3 5.366 29.126 21.784 0.18 12.5 ? O1 GX7 402 A 1 HETATM 14 O O1 GX7 . D . C 3 5.366 29.126 21.784 0.18 12.5 ? O1 GX7 402 A 1 HETATM 15 C C3 GX7 . C . C 3 5.316 30.211 22.138 0.18 14.8 ? C3 GX7 402 A 1 HETATM 16 C C3 GX7 . D . C 3 5.316 30.211 22.138 0.18 14.8 ? C3 GX7 402 A 1 HETATM 17 C C GX7 . C . C 3 5.19 31.513 24.02 0.18 18.52 ? C GX7 402 A 1 HETATM 18 C C GX7 . D . C 3 5.19 31.513 24.02 0.18 18.52 ? C GX7 402 A 1 HETATM 19 N N GX7 . C . C 3 5.292 31.38 21.301 0.18 15.96 ? N GX7 402 A 1 HETATM 20 N N GX7 . D . C 3 5.292 31.38 21.301 0.18 15.96 ? N GX7 402 A 1 HETATM 21 C C2 GX7 . C . C 3 5.194 32.666 21.802 0.18 17.81 ? C2 GX7 402 A 1 HETATM 22 C C2 GX7 . D . C 3 5.194 32.666 21.802 0.18 17.81 ? C2 GX7 402 A 1 HETATM 23 O O GX7 . C . C 3 5.105 33.609 21.002 0.18 16.83 ? O GX7 402 A 1 HETATM 24 O O GX7 . D . C 3 5.105 33.609 21.002 0.18 16.83 ? O GX7 402 A 1 HETATM 25 C C1 GX7 . C . C 3 5.165 32.695 23.256 0.18 18.44 ? C1 GX7 402 A 1 HETATM 26 C C1 GX7 . D . C 3 5.165 32.695 23.256 0.18 18.44 ? C1 GX7 402 A 1 HETATM 27 N N2 GX7 . C . C 3 5.177 33.952 23.875 0.18 22.83 ? N2 GX7 402 A 1 HETATM 28 N N2 GX7 . D . C 3 5.177 33.952 23.875 0.18 22.83 ? N2 GX7 402 A 1 HETATM 29 C C9 GX7 . C . C 3 3.249 33.674 25.245 0.18 25.6 ? C9 GX7 402 A 1 HETATM 30 C C9 GX7 . D . C 3 3.249 33.674 25.245 0.18 25.6 ? C9 GX7 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #