data_5QIC # _model_server_result.job_id wsQsTwJWs891fb1mzQidQw _model_server_result.datetime_utc '2024-10-18 16:31:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qic # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QIC # _exptl.entry_id 5QIC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QIC _cell.length_a 97.59 _cell.length_b 97.59 _cell.length_c 80.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QIC _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5QIC _atom_sites.fract_transf_matrix[1][1] 0.010247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 GX4 A 1 402 1 GX4 LIG . D 4 HOH A 1 501 91 HOH HOH . D 4 HOH A 2 502 47 HOH HOH . D 4 HOH A 3 503 71 HOH HOH . D 4 HOH A 4 504 29 HOH HOH . D 4 HOH A 5 505 21 HOH HOH . D 4 HOH A 6 506 35 HOH HOH . D 4 HOH A 7 507 26 HOH HOH . D 4 HOH A 8 508 98 HOH HOH . D 4 HOH A 9 509 122 HOH HOH . D 4 HOH A 10 510 33 HOH HOH . D 4 HOH A 11 511 65 HOH HOH . D 4 HOH A 12 512 112 HOH HOH . D 4 HOH A 13 513 36 HOH HOH . D 4 HOH A 14 514 2 HOH HOH . D 4 HOH A 15 515 27 HOH HOH . D 4 HOH A 16 516 56 HOH HOH . D 4 HOH A 17 517 99 HOH HOH . D 4 HOH A 18 518 68 HOH HOH . D 4 HOH A 19 519 15 HOH HOH . D 4 HOH A 20 520 80 HOH HOH . D 4 HOH A 21 521 55 HOH HOH . D 4 HOH A 22 522 60 HOH HOH . D 4 HOH A 23 523 14 HOH HOH . D 4 HOH A 24 524 40 HOH HOH . D 4 HOH A 25 525 9 HOH HOH . D 4 HOH A 26 526 34 HOH HOH . D 4 HOH A 27 527 54 HOH HOH . D 4 HOH A 28 528 19 HOH HOH . D 4 HOH A 29 529 87 HOH HOH . D 4 HOH A 30 530 43 HOH HOH . D 4 HOH A 31 531 134 HOH HOH . D 4 HOH A 32 532 128 HOH HOH . D 4 HOH A 33 533 10 HOH HOH . D 4 HOH A 34 534 46 HOH HOH . D 4 HOH A 35 535 24 HOH HOH . D 4 HOH A 36 536 126 HOH HOH . D 4 HOH A 37 537 75 HOH HOH . D 4 HOH A 38 538 32 HOH HOH . D 4 HOH A 39 539 110 HOH HOH . D 4 HOH A 40 540 89 HOH HOH . D 4 HOH A 41 541 97 HOH HOH . D 4 HOH A 42 542 28 HOH HOH . D 4 HOH A 43 543 17 HOH HOH . D 4 HOH A 44 544 132 HOH HOH . D 4 HOH A 45 545 90 HOH HOH . D 4 HOH A 46 546 25 HOH HOH . D 4 HOH A 47 547 113 HOH HOH . D 4 HOH A 48 548 11 HOH HOH . D 4 HOH A 49 549 1 HOH HOH . D 4 HOH A 50 550 77 HOH HOH . D 4 HOH A 51 551 37 HOH HOH . D 4 HOH A 52 552 48 HOH HOH . D 4 HOH A 53 553 5 HOH HOH . D 4 HOH A 54 554 61 HOH HOH . D 4 HOH A 55 555 51 HOH HOH . D 4 HOH A 56 556 125 HOH HOH . D 4 HOH A 57 557 20 HOH HOH . D 4 HOH A 58 558 7 HOH HOH . D 4 HOH A 59 559 95 HOH HOH . D 4 HOH A 60 560 106 HOH HOH . D 4 HOH A 61 561 38 HOH HOH . D 4 HOH A 62 562 50 HOH HOH . D 4 HOH A 63 563 118 HOH HOH . D 4 HOH A 64 564 86 HOH HOH . D 4 HOH A 65 565 78 HOH HOH . D 4 HOH A 66 566 58 HOH HOH . D 4 HOH A 67 567 4 HOH HOH . D 4 HOH A 68 568 124 HOH HOH . D 4 HOH A 69 569 111 HOH HOH . D 4 HOH A 70 570 49 HOH HOH . D 4 HOH A 71 571 13 HOH HOH . D 4 HOH A 72 572 114 HOH HOH . D 4 HOH A 73 573 70 HOH HOH . D 4 HOH A 74 574 104 HOH HOH . D 4 HOH A 75 575 117 HOH HOH . D 4 HOH A 76 576 52 HOH HOH . D 4 HOH A 77 577 41 HOH HOH . D 4 HOH A 78 578 31 HOH HOH . D 4 HOH A 79 579 18 HOH HOH . D 4 HOH A 80 580 44 HOH HOH . D 4 HOH A 81 581 64 HOH HOH . D 4 HOH A 82 582 66 HOH HOH . D 4 HOH A 83 583 74 HOH HOH . D 4 HOH A 84 584 45 HOH HOH . D 4 HOH A 85 585 39 HOH HOH . D 4 HOH A 86 586 116 HOH HOH . D 4 HOH A 87 587 62 HOH HOH . D 4 HOH A 88 588 72 HOH HOH . D 4 HOH A 89 589 107 HOH HOH . D 4 HOH A 90 590 81 HOH HOH . D 4 HOH A 91 591 130 HOH HOH . D 4 HOH A 92 592 85 HOH HOH . D 4 HOH A 93 593 109 HOH HOH . D 4 HOH A 94 594 92 HOH HOH . D 4 HOH A 95 595 121 HOH HOH . D 4 HOH A 96 596 59 HOH HOH . D 4 HOH A 97 597 57 HOH HOH . D 4 HOH A 98 598 108 HOH HOH . D 4 HOH A 99 599 82 HOH HOH . D 4 HOH A 100 600 105 HOH HOH . D 4 HOH A 101 601 96 HOH HOH . D 4 HOH A 102 602 23 HOH HOH . D 4 HOH A 103 603 94 HOH HOH . D 4 HOH A 104 604 67 HOH HOH . D 4 HOH A 105 605 93 HOH HOH . D 4 HOH A 106 606 88 HOH HOH . D 4 HOH A 107 607 6 HOH HOH . D 4 HOH A 108 608 42 HOH HOH . D 4 HOH A 109 609 12 HOH HOH . D 4 HOH A 110 610 84 HOH HOH . D 4 HOH A 111 611 123 HOH HOH . D 4 HOH A 112 612 69 HOH HOH . D 4 HOH A 113 613 120 HOH HOH . D 4 HOH A 114 614 22 HOH HOH . D 4 HOH A 115 615 127 HOH HOH . D 4 HOH A 116 616 101 HOH HOH . D 4 HOH A 117 617 8 HOH HOH . D 4 HOH A 118 618 73 HOH HOH . D 4 HOH A 119 619 102 HOH HOH . D 4 HOH A 120 620 53 HOH HOH . D 4 HOH A 121 621 79 HOH HOH . D 4 HOH A 122 622 83 HOH HOH . D 4 HOH A 123 623 30 HOH HOH . D 4 HOH A 124 624 138 HOH HOH . D 4 HOH A 125 625 133 HOH HOH . D 4 HOH A 126 626 100 HOH HOH . D 4 HOH A 127 627 16 HOH HOH . D 4 HOH A 128 628 129 HOH HOH . D 4 HOH A 129 629 131 HOH HOH . D 4 HOH A 130 630 103 HOH HOH . D 4 HOH A 131 631 3 HOH HOH . D 4 HOH A 132 632 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 8.809 30.119 18.454 1 14.36 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 8.915 31.433 18.14 1 15.48 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 8.874 31.716 16.935 1 15.22 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 9.051 32.385 19.092 1 16.07 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 9.017 32.172 20.383 1 16.31 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 9.15 33.075 21.214 1 18.16 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 8.88 30.805 20.86 1 14.41 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 8.846 30.504 22.185 1 13.94 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 8.768 29.209 22.549 1 14.78 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 8.77 28.909 23.924 1 15.01 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 8.7 27.596 24.303 1 17.86 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 8.712 27.221 25.733 1 18.43 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 8.728 26.534 23.335 1 16.79 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 8.71 25.072 23.79 1 15.88 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 8.724 26.82 22.002 1 14.36 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 8.735 28.14 21.539 1 13.94 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 8.719 28.5 20.167 1 13.19 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 8.773 29.829 19.776 1 14.3 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 8.836 27.474 19.129 1 12.33 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 10.32 27.084 18.974 1 12.03 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 11.025 28.137 18.251 1 12.9 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 10.575 25.81 18.205 1 12.84 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 9.775 25.828 16.977 1 13.38 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 10.239 24.543 18.975 1 12.69 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 10.651 24.705 20.376 1 13.13 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 10.953 23.36 18.419 1 12.34 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 10.577 22.113 18.999 1 12.12 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 11.376 21.395 20.229 1 10.03 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 12.85 21.406 19.96 1 11.5 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 10.759 20.027 20.186 1 10.05 -1 O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 11.055 22.171 21.471 1 11.55 -1 O3P FMN 401 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #