data_5QID # _model_server_result.job_id gs790EzVPrGFyavdfjDBQQ _model_server_result.datetime_utc '2024-11-25 13:59:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qid # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QID # _exptl.entry_id 5QID _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 227.691 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-chloranyl-~{N}-methyl-~{N}-[[(3~{S})-oxolan-3-yl]methyl]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QID _cell.length_a 97.487 _cell.length_b 97.487 _cell.length_c 80.388 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QID _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 Cl N3 O' _chem_comp.formula_weight 227.691 _chem_comp.id GWY _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloranyl-~{N}-methyl-~{N}-[[(3~{S})-oxolan-3-yl]methyl]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C8 GWY doub 183 n y N2 C7 GWY sing 184 n y C8 C9 GWY sing 185 n y C7 N1 GWY doub 186 n y C9 CL GWY sing 187 n n C9 C6 GWY doub 188 n y N1 C6 GWY sing 189 n y C6 N GWY sing 190 n n N C GWY sing 191 n n N C1 GWY sing 192 n n C1 C2 GWY sing 193 n n C2 C3 GWY sing 194 n n C2 C5 GWY sing 195 n n C3 C4 GWY sing 196 n n C5 O GWY sing 197 n n C4 O GWY sing 198 n n C4 H1 GWY sing 199 n n C4 H2 GWY sing 200 n n C5 H3 GWY sing 201 n n C5 H4 GWY sing 202 n n C7 H5 GWY sing 203 n n C8 H6 GWY sing 204 n n C H7 GWY sing 205 n n C H8 GWY sing 206 n n C H9 GWY sing 207 n n C1 H10 GWY sing 208 n n C1 H11 GWY sing 209 n n C2 H12 GWY sing 210 n n C3 H13 GWY sing 211 n n C3 H14 GWY sing 212 n n # _atom_sites.entry_id 5QID _atom_sites.fract_transf_matrix[1][1] 0.010258 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 GWY A 1 402 1 GWY LIG . D 4 HOH A 1 501 91 HOH HOH . D 4 HOH A 2 502 47 HOH HOH . D 4 HOH A 3 503 99 HOH HOH . D 4 HOH A 4 504 54 HOH HOH . D 4 HOH A 5 505 65 HOH HOH . D 4 HOH A 6 506 29 HOH HOH . D 4 HOH A 7 507 26 HOH HOH . D 4 HOH A 8 508 21 HOH HOH . D 4 HOH A 9 509 35 HOH HOH . D 4 HOH A 10 510 71 HOH HOH . D 4 HOH A 11 511 82 HOH HOH . D 4 HOH A 12 512 40 HOH HOH . D 4 HOH A 13 513 55 HOH HOH . D 4 HOH A 14 514 89 HOH HOH . D 4 HOH A 15 515 27 HOH HOH . D 4 HOH A 16 516 112 HOH HOH . D 4 HOH A 17 517 134 HOH HOH . D 4 HOH A 18 518 33 HOH HOH . D 4 HOH A 19 519 125 HOH HOH . D 4 HOH A 20 520 56 HOH HOH . D 4 HOH A 21 521 19 HOH HOH . D 4 HOH A 22 522 2 HOH HOH . D 4 HOH A 23 523 98 HOH HOH . D 4 HOH A 24 524 68 HOH HOH . D 4 HOH A 25 525 14 HOH HOH . D 4 HOH A 26 526 126 HOH HOH . D 4 HOH A 27 527 34 HOH HOH . D 4 HOH A 28 528 10 HOH HOH . D 4 HOH A 29 529 122 HOH HOH . D 4 HOH A 30 530 110 HOH HOH . D 4 HOH A 31 531 36 HOH HOH . D 4 HOH A 32 532 61 HOH HOH . D 4 HOH A 33 533 80 HOH HOH . D 4 HOH A 34 534 43 HOH HOH . D 4 HOH A 35 535 32 HOH HOH . D 4 HOH A 36 536 113 HOH HOH . D 4 HOH A 37 537 132 HOH HOH . D 4 HOH A 38 538 28 HOH HOH . D 4 HOH A 39 539 15 HOH HOH . D 4 HOH A 40 540 5 HOH HOH . D 4 HOH A 41 541 9 HOH HOH . D 4 HOH A 42 542 87 HOH HOH . D 4 HOH A 43 543 20 HOH HOH . D 4 HOH A 44 544 50 HOH HOH . D 4 HOH A 45 545 25 HOH HOH . D 4 HOH A 46 546 78 HOH HOH . D 4 HOH A 47 547 118 HOH HOH . D 4 HOH A 48 548 58 HOH HOH . D 4 HOH A 49 549 11 HOH HOH . D 4 HOH A 50 550 106 HOH HOH . D 4 HOH A 51 551 46 HOH HOH . D 4 HOH A 52 552 97 HOH HOH . D 4 HOH A 53 553 75 HOH HOH . D 4 HOH A 54 554 37 HOH HOH . D 4 HOH A 55 555 128 HOH HOH . D 4 HOH A 56 556 1 HOH HOH . D 4 HOH A 57 557 104 HOH HOH . D 4 HOH A 58 558 48 HOH HOH . D 4 HOH A 59 559 4 HOH HOH . D 4 HOH A 60 560 95 HOH HOH . D 4 HOH A 61 561 41 HOH HOH . D 4 HOH A 62 562 17 HOH HOH . D 4 HOH A 63 563 44 HOH HOH . D 4 HOH A 64 564 90 HOH HOH . D 4 HOH A 65 565 7 HOH HOH . D 4 HOH A 66 566 77 HOH HOH . D 4 HOH A 67 567 130 HOH HOH . D 4 HOH A 68 568 13 HOH HOH . D 4 HOH A 69 569 51 HOH HOH . D 4 HOH A 70 570 31 HOH HOH . D 4 HOH A 71 571 49 HOH HOH . D 4 HOH A 72 572 109 HOH HOH . D 4 HOH A 73 573 69 HOH HOH . D 4 HOH A 74 574 45 HOH HOH . D 4 HOH A 75 575 111 HOH HOH . D 4 HOH A 76 576 57 HOH HOH . D 4 HOH A 77 577 74 HOH HOH . D 4 HOH A 78 578 85 HOH HOH . D 4 HOH A 79 579 38 HOH HOH . D 4 HOH A 80 580 107 HOH HOH . D 4 HOH A 81 581 59 HOH HOH . D 4 HOH A 82 582 52 HOH HOH . D 4 HOH A 83 583 66 HOH HOH . D 4 HOH A 84 584 117 HOH HOH . D 4 HOH A 85 585 86 HOH HOH . D 4 HOH A 86 586 116 HOH HOH . D 4 HOH A 87 587 24 HOH HOH . D 4 HOH A 88 588 81 HOH HOH . D 4 HOH A 89 589 70 HOH HOH . D 4 HOH A 90 590 139 HOH HOH . D 4 HOH A 91 591 114 HOH HOH . D 4 HOH A 92 592 18 HOH HOH . D 4 HOH A 93 593 72 HOH HOH . D 4 HOH A 94 594 60 HOH HOH . D 4 HOH A 95 595 92 HOH HOH . D 4 HOH A 96 596 121 HOH HOH . D 4 HOH A 97 597 67 HOH HOH . D 4 HOH A 98 598 94 HOH HOH . D 4 HOH A 99 599 62 HOH HOH . D 4 HOH A 100 600 108 HOH HOH . D 4 HOH A 101 601 23 HOH HOH . D 4 HOH A 102 602 64 HOH HOH . D 4 HOH A 103 603 39 HOH HOH . D 4 HOH A 104 604 105 HOH HOH . D 4 HOH A 105 605 124 HOH HOH . D 4 HOH A 106 606 6 HOH HOH . D 4 HOH A 107 607 12 HOH HOH . D 4 HOH A 108 608 93 HOH HOH . D 4 HOH A 109 609 42 HOH HOH . D 4 HOH A 110 610 96 HOH HOH . D 4 HOH A 111 611 127 HOH HOH . D 4 HOH A 112 612 84 HOH HOH . D 4 HOH A 113 613 73 HOH HOH . D 4 HOH A 114 614 22 HOH HOH . D 4 HOH A 115 615 101 HOH HOH . D 4 HOH A 116 616 123 HOH HOH . D 4 HOH A 117 617 8 HOH HOH . D 4 HOH A 118 618 120 HOH HOH . D 4 HOH A 119 619 102 HOH HOH . D 4 HOH A 120 620 88 HOH HOH . D 4 HOH A 121 621 53 HOH HOH . D 4 HOH A 122 622 79 HOH HOH . D 4 HOH A 123 623 83 HOH HOH . D 4 HOH A 124 624 30 HOH HOH . D 4 HOH A 125 625 133 HOH HOH . D 4 HOH A 126 626 138 HOH HOH . D 4 HOH A 127 627 100 HOH HOH . D 4 HOH A 128 628 16 HOH HOH . D 4 HOH A 129 629 129 HOH HOH . D 4 HOH A 130 630 131 HOH HOH . D 4 HOH A 131 631 103 HOH HOH . D 4 HOH A 132 632 3 HOH HOH . D 4 HOH A 133 633 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GWY . C . C 3 36.399 10.972 16.566 0.24 25.12 ? N1 GWY 402 A 1 HETATM 2 N N1 GWY . D . C 3 36.399 10.972 16.566 0.24 25.12 ? N1 GWY 402 A 1 HETATM 3 C C4 GWY . C . C 3 32.798 6.693 20.887 0.24 26.17 ? C4 GWY 402 A 1 HETATM 4 C C4 GWY . D . C 3 32.798 6.693 20.887 0.24 26.17 ? C4 GWY 402 A 1 HETATM 5 C C5 GWY . C . C 3 34.94 7.571 20.717 0.24 26.36 ? C5 GWY 402 A 1 HETATM 6 C C5 GWY . D . C 3 34.94 7.571 20.717 0.24 26.36 ? C5 GWY 402 A 1 HETATM 7 C C6 GWY . C . C 3 35.314 10.316 17.156 0.24 24.26 ? C6 GWY 402 A 1 HETATM 8 C C6 GWY . D . C 3 35.314 10.316 17.156 0.24 24.26 ? C6 GWY 402 A 1 HETATM 9 C C7 GWY . C . C 3 36.373 11.227 15.229 0.24 24.24 ? C7 GWY 402 A 1 HETATM 10 C C7 GWY . D . C 3 36.373 11.227 15.229 0.24 24.24 ? C7 GWY 402 A 1 HETATM 11 C C8 GWY . C . C 3 34.267 10.265 14.943 0.24 24.13 ? C8 GWY 402 A 1 HETATM 12 C C8 GWY . D . C 3 34.267 10.265 14.943 0.24 24.13 ? C8 GWY 402 A 1 HETATM 13 CL CL GWY . C . C 3 32.682 9.166 16.782 0.24 24.02 ? CL GWY 402 A 1 HETATM 14 CL CL GWY . D . C 3 32.682 9.166 16.782 0.24 24.02 ? CL GWY 402 A 1 HETATM 15 C C9 GWY . C . C 3 34.172 9.946 16.326 0.24 24.31 ? C9 GWY 402 A 1 HETATM 16 C C9 GWY . D . C 3 34.172 9.946 16.326 0.24 24.31 ? C9 GWY 402 A 1 HETATM 17 N N2 GWY . C . C 3 35.348 10.889 14.373 0.24 23.98 ? N2 GWY 402 A 1 HETATM 18 N N2 GWY . D . C 3 35.348 10.889 14.373 0.24 23.98 ? N2 GWY 402 A 1 HETATM 19 N N GWY . C . C 3 35.49 10.036 18.559 0.24 25.55 ? N GWY 402 A 1 HETATM 20 N N GWY . D . C 3 35.49 10.036 18.559 0.24 25.55 ? N GWY 402 A 1 HETATM 21 C C GWY . C . C 3 36.865 9.831 19.121 0.24 25.62 ? C GWY 402 A 1 HETATM 22 C C GWY . D . C 3 36.865 9.831 19.121 0.24 25.62 ? C GWY 402 A 1 HETATM 23 C C1 GWY . C . C 3 34.389 9.782 19.494 0.24 25.3 ? C1 GWY 402 A 1 HETATM 24 C C1 GWY . D . C 3 34.389 9.782 19.494 0.24 25.3 ? C1 GWY 402 A 1 HETATM 25 C C2 GWY . C . C 3 34.062 8.285 19.659 0.24 25.95 ? C2 GWY 402 A 1 HETATM 26 C C2 GWY . D . C 3 34.062 8.285 19.659 0.24 25.95 ? C2 GWY 402 A 1 HETATM 27 O O GWY . C . C 3 34.132 6.598 21.334 0.24 26.48 ? O GWY 402 A 1 HETATM 28 O O GWY . D . C 3 34.132 6.598 21.334 0.24 26.48 ? O GWY 402 A 1 HETATM 29 C C3 GWY . C . C 3 32.665 8.038 20.185 0.24 25.98 ? C3 GWY 402 A 1 HETATM 30 C C3 GWY . D . C 3 32.665 8.038 20.185 0.24 25.98 ? C3 GWY 402 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #