data_5QIF # _model_server_result.job_id Z4tLoO235ZGKGtd46kqBGg _model_server_result.datetime_utc '2024-11-21 23:38:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QIF # _exptl.entry_id 5QIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QIF _cell.length_a 97.78 _cell.length_b 97.78 _cell.length_c 81.268 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5QIF _atom_sites.fract_transf_matrix[1][1] 0.010227 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 GWS A 1 402 1 GWS LIG . D 4 HOH A 1 501 47 HOH HOH . D 4 HOH A 2 502 91 HOH HOH . D 4 HOH A 3 503 33 HOH HOH . D 4 HOH A 4 504 68 HOH HOH . D 4 HOH A 5 505 112 HOH HOH . D 4 HOH A 6 506 71 HOH HOH . D 4 HOH A 7 507 29 HOH HOH . D 4 HOH A 8 508 26 HOH HOH . D 4 HOH A 9 509 65 HOH HOH . D 4 HOH A 10 510 35 HOH HOH . D 4 HOH A 11 511 14 HOH HOH . D 4 HOH A 12 512 27 HOH HOH . D 4 HOH A 13 513 10 HOH HOH . D 4 HOH A 14 514 36 HOH HOH . D 4 HOH A 15 515 31 HOH HOH . D 4 HOH A 16 516 19 HOH HOH . D 4 HOH A 17 517 2 HOH HOH . D 4 HOH A 18 518 99 HOH HOH . D 4 HOH A 19 519 54 HOH HOH . D 4 HOH A 20 520 134 HOH HOH . D 4 HOH A 21 521 56 HOH HOH . D 4 HOH A 22 522 25 HOH HOH . D 4 HOH A 23 523 40 HOH HOH . D 4 HOH A 24 524 132 HOH HOH . D 4 HOH A 25 525 15 HOH HOH . D 4 HOH A 26 526 43 HOH HOH . D 4 HOH A 27 527 17 HOH HOH . D 4 HOH A 28 528 51 HOH HOH . D 4 HOH A 29 529 113 HOH HOH . D 4 HOH A 30 530 32 HOH HOH . D 4 HOH A 31 531 55 HOH HOH . D 4 HOH A 32 532 111 HOH HOH . D 4 HOH A 33 533 130 HOH HOH . D 4 HOH A 34 534 110 HOH HOH . D 4 HOH A 35 535 128 HOH HOH . D 4 HOH A 36 536 114 HOH HOH . D 4 HOH A 37 537 28 HOH HOH . D 4 HOH A 38 538 1 HOH HOH . D 4 HOH A 39 539 125 HOH HOH . D 4 HOH A 40 540 46 HOH HOH . D 4 HOH A 41 541 126 HOH HOH . D 4 HOH A 42 542 80 HOH HOH . D 4 HOH A 43 543 89 HOH HOH . D 4 HOH A 44 544 20 HOH HOH . D 4 HOH A 45 545 97 HOH HOH . D 4 HOH A 46 546 75 HOH HOH . D 4 HOH A 47 547 98 HOH HOH . D 4 HOH A 48 548 61 HOH HOH . D 4 HOH A 49 549 11 HOH HOH . D 4 HOH A 50 550 9 HOH HOH . D 4 HOH A 51 551 50 HOH HOH . D 4 HOH A 52 552 106 HOH HOH . D 4 HOH A 53 553 38 HOH HOH . D 4 HOH A 54 554 7 HOH HOH . D 4 HOH A 55 555 5 HOH HOH . D 4 HOH A 56 556 70 HOH HOH . D 4 HOH A 57 557 49 HOH HOH . D 4 HOH A 58 558 87 HOH HOH . D 4 HOH A 59 559 48 HOH HOH . D 4 HOH A 60 560 4 HOH HOH . D 4 HOH A 61 561 77 HOH HOH . D 4 HOH A 62 562 81 HOH HOH . D 4 HOH A 63 563 45 HOH HOH . D 4 HOH A 64 564 85 HOH HOH . D 4 HOH A 65 565 116 HOH HOH . D 4 HOH A 66 566 74 HOH HOH . D 4 HOH A 67 567 13 HOH HOH . D 4 HOH A 68 568 52 HOH HOH . D 4 HOH A 69 569 86 HOH HOH . D 4 HOH A 70 570 59 HOH HOH . D 4 HOH A 71 571 69 HOH HOH . D 4 HOH A 72 572 18 HOH HOH . D 4 HOH A 73 573 41 HOH HOH . D 4 HOH A 74 574 24 HOH HOH . D 4 HOH A 75 575 95 HOH HOH . D 4 HOH A 76 576 104 HOH HOH . D 4 HOH A 77 577 60 HOH HOH . D 4 HOH A 78 578 44 HOH HOH . D 4 HOH A 79 579 66 HOH HOH . D 4 HOH A 80 580 58 HOH HOH . D 4 HOH A 81 581 108 HOH HOH . D 4 HOH A 82 582 78 HOH HOH . D 4 HOH A 83 583 118 HOH HOH . D 4 HOH A 84 584 90 HOH HOH . D 4 HOH A 85 585 117 HOH HOH . D 4 HOH A 86 586 62 HOH HOH . D 4 HOH A 87 587 105 HOH HOH . D 4 HOH A 88 588 39 HOH HOH . D 4 HOH A 89 589 37 HOH HOH . D 4 HOH A 90 590 92 HOH HOH . D 4 HOH A 91 591 82 HOH HOH . D 4 HOH A 92 592 72 HOH HOH . D 4 HOH A 93 593 123 HOH HOH . D 4 HOH A 94 594 94 HOH HOH . D 4 HOH A 95 595 121 HOH HOH . D 4 HOH A 96 596 107 HOH HOH . D 4 HOH A 97 597 21 HOH HOH . D 4 HOH A 98 598 6 HOH HOH . D 4 HOH A 99 599 12 HOH HOH . D 4 HOH A 100 600 109 HOH HOH . D 4 HOH A 101 601 84 HOH HOH . D 4 HOH A 102 602 88 HOH HOH . D 4 HOH A 103 603 67 HOH HOH . D 4 HOH A 104 604 124 HOH HOH . D 4 HOH A 105 605 101 HOH HOH . D 4 HOH A 106 606 23 HOH HOH . D 4 HOH A 107 607 93 HOH HOH . D 4 HOH A 108 608 102 HOH HOH . D 4 HOH A 109 609 96 HOH HOH . D 4 HOH A 110 610 42 HOH HOH . D 4 HOH A 111 611 57 HOH HOH . D 4 HOH A 112 612 122 HOH HOH . D 4 HOH A 113 613 22 HOH HOH . D 4 HOH A 114 614 120 HOH HOH . D 4 HOH A 115 615 127 HOH HOH . D 4 HOH A 116 616 73 HOH HOH . D 4 HOH A 117 617 139 HOH HOH . D 4 HOH A 118 618 8 HOH HOH . D 4 HOH A 119 619 79 HOH HOH . D 4 HOH A 120 620 64 HOH HOH . D 4 HOH A 121 621 53 HOH HOH . D 4 HOH A 122 622 83 HOH HOH . D 4 HOH A 123 623 133 HOH HOH . D 4 HOH A 124 624 100 HOH HOH . D 4 HOH A 125 625 30 HOH HOH . D 4 HOH A 126 626 138 HOH HOH . D 4 HOH A 127 627 16 HOH HOH . D 4 HOH A 128 628 129 HOH HOH . D 4 HOH A 129 629 103 HOH HOH . D 4 HOH A 130 630 131 HOH HOH . D 4 HOH A 131 631 34 HOH HOH . D 4 HOH A 132 632 3 HOH HOH . D 4 HOH A 133 633 136 HOH HOH . D 4 HOH A 134 634 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 8.826 30.122 18.459 1 12.94 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 8.904 31.441 18.144 1 13.88 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 8.872 31.719 16.926 1 14.62 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 9.033 32.388 19.108 1 13.79 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 9 32.144 20.41 1 15.32 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 9.104 33.036 21.233 1 16.54 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 8.912 30.751 20.848 1 14.22 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 8.885 30.432 22.151 1 13.64 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 8.856 29.127 22.523 1 13.48 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 8.863 28.781 23.885 1 13.47 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 8.865 27.44 24.226 1 15.66 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 8.9 27.079 25.68 1 18.3 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 8.822 26.394 23.2 1 15.06 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 8.831 24.937 23.641 1 16.66 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 8.823 26.74 21.859 1 13.02 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 8.809 28.081 21.477 1 12.85 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 8.786 28.437 20.125 1 12.02 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 8.838 29.783 19.767 1 13.08 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 8.868 27.417 19.066 1 12.34 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 10.382 27.025 18.923 1 11.75 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 11.114 28.056 18.205 1 12.24 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 10.621 25.734 18.153 1 11.81 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 9.837 25.777 16.94 1 12.17 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 10.282 24.472 18.947 1 11.29 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 10.708 24.645 20.307 1 12.17 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 11.004 23.289 18.356 1 10.84 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 10.616 22.044 18.942 1 11.1 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 11.399 21.362 20.191 1 8.93 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 12.882 21.354 19.952 1 9.85 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 10.791 19.994 20.149 1 9.39 -1 O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 11.054 22.108 21.451 1 9.72 -1 O3P FMN 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #