data_5QIJ # _model_server_result.job_id FmZAF44EUlqqZjA_H6G5sg _model_server_result.datetime_utc '2025-03-11 11:08:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qij # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5QIJ # _exptl.entry_id 5QIJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QIJ _cell.length_a 96.3 _cell.length_b 96.3 _cell.length_c 198.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 281 n n PA O2A NAP sing 282 n n PA O5B NAP sing 283 n n PA O3 NAP sing 284 n n O2A HOA2 NAP sing 285 n n O5B C5B NAP sing 286 n n C5B C4B NAP sing 287 n n C5B H51A NAP sing 288 n n C5B H52A NAP sing 289 n n C4B O4B NAP sing 290 n n C4B C3B NAP sing 291 n n C4B H4B NAP sing 292 n n O4B C1B NAP sing 293 n n C3B O3B NAP sing 294 n n C3B C2B NAP sing 295 n n C3B H3B NAP sing 296 n n O3B HO3A NAP sing 297 n n C2B O2B NAP sing 298 n n C2B C1B NAP sing 299 n n C2B H2B NAP sing 300 n n O2B P2B NAP sing 301 n n C1B N9A NAP sing 302 n n C1B H1B NAP sing 303 n n N9A C8A NAP sing 304 n y N9A C4A NAP sing 305 n y C8A N7A NAP doub 306 n y C8A H8A NAP sing 307 n n N7A C5A NAP sing 308 n y C5A C6A NAP sing 309 n y C5A C4A NAP doub 310 n y C6A N6A NAP sing 311 n n C6A N1A NAP doub 312 n y N6A H61A NAP sing 313 n n N6A H62A NAP sing 314 n n N1A C2A NAP sing 315 n y C2A N3A NAP doub 316 n y C2A H2A NAP sing 317 n n N3A C4A NAP sing 318 n y O3 PN NAP sing 319 n n PN O1N NAP doub 320 n n PN O2N NAP sing 321 n n PN O5D NAP sing 322 n n O5D C5D NAP sing 323 n n C5D C4D NAP sing 324 n n C5D H51N NAP sing 325 n n C5D H52N NAP sing 326 n n C4D O4D NAP sing 327 n n C4D C3D NAP sing 328 n n C4D H4D NAP sing 329 n n O4D C1D NAP sing 330 n n C3D O3D NAP sing 331 n n C3D C2D NAP sing 332 n n C3D H3D NAP sing 333 n n O3D HO3N NAP sing 334 n n C2D O2D NAP sing 335 n n C2D C1D NAP sing 336 n n C2D H2D NAP sing 337 n n O2D HO2N NAP sing 338 n n C1D N1N NAP sing 339 n n C1D H1D NAP sing 340 n n N1N C2N NAP sing 341 n y N1N C6N NAP doub 342 n y C2N C3N NAP doub 343 n y C2N H2N NAP sing 344 n n C3N C7N NAP sing 345 n n C3N C4N NAP sing 346 n y C7N O7N NAP doub 347 n n C7N N7N NAP sing 348 n n N7N H71N NAP sing 349 n n N7N H72N NAP sing 350 n n C4N C5N NAP doub 351 n y C4N H4N NAP sing 352 n n C5N C6N NAP sing 353 n y C5N H5N NAP sing 354 n n C6N H6N NAP sing 355 n n P2B O1X NAP doub 356 n n P2B O2X NAP sing 357 n n P2B O3X NAP sing 358 n n O2X HOP2 NAP sing 359 n n O3X HOP3 NAP sing 360 n n # _atom_sites.entry_id 5QIJ _atom_sites.fract_transf_matrix[1][1] 0.010384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 301 NAP NAP . D 3 HJG A 1 302 302 HJG LG1 . E 4 SO4 A 1 303 351 SO4 SO4 . F 4 SO4 A 1 304 352 SO4 SO4 . G 4 SO4 A 1 305 353 SO4 SO4 . H 4 SO4 A 1 306 354 SO4 SO4 . I 3 HJG B 1 301 303 HJG LG1 . J 2 NAP B 1 302 301 NAP NAP . K 3 HJG B 1 303 302 HJG LG1 . L 3 HJG B 1 304 303 HJG LG1 . M 4 SO4 B 1 305 351 SO4 SO4 . N 4 SO4 B 1 306 352 SO4 SO4 . O 4 SO4 B 1 307 353 SO4 SO4 . P 5 HOH A 1 401 47 HOH HOH . P 5 HOH A 2 402 39 HOH HOH . P 5 HOH A 3 403 37 HOH HOH . P 5 HOH A 4 404 38 HOH HOH . P 5 HOH A 5 405 45 HOH HOH . P 5 HOH A 6 406 9 HOH HOH . P 5 HOH A 7 407 41 HOH HOH . P 5 HOH A 8 408 43 HOH HOH . P 5 HOH A 9 409 1 HOH HOH . P 5 HOH A 10 410 16 HOH HOH . P 5 HOH A 11 411 36 HOH HOH . P 5 HOH A 12 412 27 HOH HOH . P 5 HOH A 13 413 42 HOH HOH . P 5 HOH A 14 414 44 HOH HOH . P 5 HOH A 15 415 35 HOH HOH . P 5 HOH A 16 416 24 HOH HOH . P 5 HOH A 17 417 10 HOH HOH . P 5 HOH A 18 418 46 HOH HOH . P 5 HOH A 19 419 49 HOH HOH . P 5 HOH A 20 420 51 HOH HOH . P 5 HOH A 21 421 48 HOH HOH . Q 5 HOH B 1 401 3 HOH HOH . Q 5 HOH B 2 402 26 HOH HOH . Q 5 HOH B 3 403 2 HOH HOH . Q 5 HOH B 4 404 29 HOH HOH . Q 5 HOH B 5 405 12 HOH HOH . Q 5 HOH B 6 406 25 HOH HOH . Q 5 HOH B 7 407 5 HOH HOH . Q 5 HOH B 8 408 34 HOH HOH . Q 5 HOH B 9 409 33 HOH HOH . Q 5 HOH B 10 410 8 HOH HOH . Q 5 HOH B 11 411 4 HOH HOH . Q 5 HOH B 12 412 23 HOH HOH . Q 5 HOH B 13 413 20 HOH HOH . Q 5 HOH B 14 414 13 HOH HOH . Q 5 HOH B 15 415 15 HOH HOH . Q 5 HOH B 16 416 18 HOH HOH . Q 5 HOH B 17 417 6 HOH HOH . Q 5 HOH B 18 418 31 HOH HOH . Q 5 HOH B 19 419 19 HOH HOH . Q 5 HOH B 20 420 32 HOH HOH . Q 5 HOH B 21 421 28 HOH HOH . Q 5 HOH B 22 422 30 HOH HOH . Q 5 HOH B 23 423 17 HOH HOH . Q 5 HOH B 24 424 40 HOH HOH . Q 5 HOH B 25 425 21 HOH HOH . Q 5 HOH B 26 426 14 HOH HOH . Q 5 HOH B 27 427 11 HOH HOH . Q 5 HOH B 28 428 22 HOH HOH . Q 5 HOH B 29 429 7 HOH HOH . Q 5 HOH B 30 430 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 22.31 15.843 40.325 1 76.91 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . C 2 22.736 14.926 41.41 1 79.11 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . C 2 22.06 17.279 40.803 1 76.84 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . C 2 23.436 16.039 39.207 1 76.42 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . C 2 23.382 17.017 38.151 1 78.91 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . C 2 24.69 16.948 37.407 1 79.35 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . C 2 24.764 18.036 36.453 1 77.19 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . C 2 25.944 17.053 38.279 1 79.54 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . C 2 27.001 16.212 37.829 1 77.8 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . C 2 26.321 18.522 38.147 1 78.6 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . C 2 27.719 18.739 38.429 1 77.06 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . C 2 25.922 18.813 36.7 1 75.37 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . C 2 25.618 20.21 36.401 1 68.33 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . C 2 24.946 21.099 37.2 1 67.45 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . C 2 24.916 22.324 36.733 1 62.67 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . C 2 25.61 22.235 35.536 1 62.35 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . C 2 25.964 23.198 34.57 1 63.13 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . C 2 25.686 24.501 34.683 1 63.41 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . C 2 26.678 22.777 33.499 1 62.88 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . C 2 27.03 21.489 33.423 1 62.15 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . C 2 26.753 20.493 34.268 1 61.48 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . C 2 26.04 20.935 35.313 1 63.88 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . C 2 21.129 15.319 39.381 1 74.81 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . C 2 20.289 13.961 39.295 1 68.83 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . C 2 19.237 14.031 40.334 1 68.98 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . C 2 21.215 12.808 39.285 1 67.61 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . C 2 19.591 14.136 37.871 1 70.15 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . C 2 20.108 13.544 36.66 1 74.62 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . C 2 19.035 13.597 35.599 1 76.31 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . C 2 17.86 12.882 36.054 1 78.06 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . C 2 18.539 14.99 35.231 1 74.52 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . C 2 18.383 15.127 33.821 1 71.74 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . C 2 17.207 15.056 35.973 1 75.87 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . C 2 16.288 15.866 35.261 1 76.02 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . C 2 16.68 13.612 35.849 1 76.85 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . C 2 15.685 13.271 36.972 1 76.44 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . C 2 16.135 13.196 38.299 1 76.03 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . C 2 15.256 12.866 39.318 1 74.77 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . C 2 15.709 12.587 40.736 1 72.91 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . C 2 14.883 12.385 41.596 1 68.96 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . C 2 17.019 12.571 40.995 1 75.81 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . C 2 13.915 12.664 39 1 73.52 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . C 2 13.485 12.752 37.687 1 72.36 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . C 2 14.39 13.044 36.683 1 74.44 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . C 2 28.354 20.176 38.721 1 78.04 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . C 2 28.43 20.946 37.489 1 74.98 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . C 2 27.524 20.85 39.822 1 80.79 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . C 2 29.717 19.796 39.301 1 81.68 ? O3X NAP 301 A 1 HETATM 49 H HOA2 NAP . . . C 2 21.489 18.004 40.437 0 76.04 ? HOA2 NAP 301 A 1 HETATM 50 H H51A NAP . . . C 2 22.563 16.684 37.514 0 81.13 ? H51A NAP 301 A 1 HETATM 51 H H52A NAP . . . C 2 23.151 18.019 38.51 0 81.13 ? H52A NAP 301 A 1 HETATM 52 H H4B NAP . . . C 2 24.699 16.058 36.779 0 81.14 ? H4B NAP 301 A 1 HETATM 53 H H3B NAP . . . C 2 25.709 16.823 39.315 0 81.19 ? H3B NAP 301 A 1 HETATM 54 H HO3A NAP . . . C 2 26.806 15.308 38.191 0 80.93 ? HO3A NAP 301 A 1 HETATM 55 H H2B NAP . . . C 2 25.725 19.072 38.873 0 80.99 ? H2B NAP 301 A 1 HETATM 56 H H1B NAP . . . C 2 26.682 18.492 35.989 0 77.65 ? H1B NAP 301 A 1 HETATM 57 H H8A NAP . . . C 2 24.462 20.818 38.134 0 72.23 ? H8A NAP 301 A 1 HETATM 58 H H61A NAP . . . C 2 25.192 24.857 35.495 0 65.3 ? H61A NAP 301 A 1 HETATM 59 H H62A NAP . . . C 2 25.954 25.168 33.967 0 65.3 ? H62A NAP 301 A 1 HETATM 60 H H2A NAP . . . C 2 27.677 21.218 32.592 0 66.4 ? H2A NAP 301 A 1 HETATM 61 H H51N NAP . . . C 2 20.491 12.531 36.771 0 76.53 ? H51N NAP 301 A 1 HETATM 62 H H52N NAP . . . C 2 20.966 14.166 36.407 0 76.53 ? H52N NAP 301 A 1 HETATM 63 H H4D NAP . . . C 2 19.372 13.063 34.713 0 77.35 ? H4D NAP 301 A 1 HETATM 64 H H3D NAP . . . C 2 19.184 15.783 35.605 0 75.57 ? H3D NAP 301 A 1 HETATM 65 H HO3N NAP . . . C 2 17.548 14.666 33.546 0 72.61 ? HO3N NAP 301 A 1 HETATM 66 H H2D NAP . . . C 2 17.304 15.399 37.002 0 77.17 ? H2D NAP 301 A 1 HETATM 67 H HO2N NAP . . . C 2 16.245 16.75 35.709 0 78.81 ? HO2N NAP 301 A 1 HETATM 68 H H1D NAP . . . C 2 16.214 13.33 34.906 0 77.42 ? H1D NAP 301 A 1 HETATM 69 H H2N NAP . . . C 2 17.176 13.448 38.492 0 76.73 ? H2N NAP 301 A 1 HETATM 70 H H71N NAP . . . C 2 17.345 12.379 41.936 0 78 ? H71N NAP 301 A 1 HETATM 71 H H72N NAP . . . C 2 17.764 12.694 40.318 0 78 ? H72N NAP 301 A 1 HETATM 72 H H4N NAP . . . C 2 13.166 12.456 39.762 0 75.04 ? H4N NAP 301 A 1 HETATM 73 H H5N NAP . . . C 2 12.435 12.618 37.437 0 73.78 ? H5N NAP 301 A 1 HETATM 74 H H6N NAP . . . C 2 14.053 13.094 35.65 0 74.07 ? H6N NAP 301 A 1 HETATM 75 H HOP2 NAP . . . C 2 27.467 20.385 40.698 0 85.59 ? HOP2 NAP 301 A 1 HETATM 76 H HOP3 NAP . . . C 2 29.845 19.246 40.117 0 85.8 ? HOP3 NAP 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 76 #