data_5QIJ
#
_model_server_result.job_id            mU6BRo4ETi5vlWY0CGpczw 
_model_server_result.datetime_utc      '2025-07-17 05:22:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qij 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    5QIJ 
#
_exptl.entry_id    5QIJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5QIJ 
_cell.length_a            96.3 
_cell.length_b            96.3 
_cell.length_c            198.8 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QIJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 281 n n 
PA O2A NAP sing 282 n n 
PA O5B NAP sing 283 n n 
PA O3 NAP sing 284 n n 
O2A HOA2 NAP sing 285 n n 
O5B C5B NAP sing 286 n n 
C5B C4B NAP sing 287 n n 
C5B H51A NAP sing 288 n n 
C5B H52A NAP sing 289 n n 
C4B O4B NAP sing 290 n n 
C4B C3B NAP sing 291 n n 
C4B H4B NAP sing 292 n n 
O4B C1B NAP sing 293 n n 
C3B O3B NAP sing 294 n n 
C3B C2B NAP sing 295 n n 
C3B H3B NAP sing 296 n n 
O3B HO3A NAP sing 297 n n 
C2B O2B NAP sing 298 n n 
C2B C1B NAP sing 299 n n 
C2B H2B NAP sing 300 n n 
O2B P2B NAP sing 301 n n 
C1B N9A NAP sing 302 n n 
C1B H1B NAP sing 303 n n 
N9A C8A NAP sing 304 n y 
N9A C4A NAP sing 305 n y 
C8A N7A NAP doub 306 n y 
C8A H8A NAP sing 307 n n 
N7A C5A NAP sing 308 n y 
C5A C6A NAP sing 309 n y 
C5A C4A NAP doub 310 n y 
C6A N6A NAP sing 311 n n 
C6A N1A NAP doub 312 n y 
N6A H61A NAP sing 313 n n 
N6A H62A NAP sing 314 n n 
N1A C2A NAP sing 315 n y 
C2A N3A NAP doub 316 n y 
C2A H2A NAP sing 317 n n 
N3A C4A NAP sing 318 n y 
O3 PN NAP sing 319 n n 
PN O1N NAP doub 320 n n 
PN O2N NAP sing 321 n n 
PN O5D NAP sing 322 n n 
O5D C5D NAP sing 323 n n 
C5D C4D NAP sing 324 n n 
C5D H51N NAP sing 325 n n 
C5D H52N NAP sing 326 n n 
C4D O4D NAP sing 327 n n 
C4D C3D NAP sing 328 n n 
C4D H4D NAP sing 329 n n 
O4D C1D NAP sing 330 n n 
C3D O3D NAP sing 331 n n 
C3D C2D NAP sing 332 n n 
C3D H3D NAP sing 333 n n 
O3D HO3N NAP sing 334 n n 
C2D O2D NAP sing 335 n n 
C2D C1D NAP sing 336 n n 
C2D H2D NAP sing 337 n n 
O2D HO2N NAP sing 338 n n 
C1D N1N NAP sing 339 n n 
C1D H1D NAP sing 340 n n 
N1N C2N NAP sing 341 n y 
N1N C6N NAP doub 342 n y 
C2N C3N NAP doub 343 n y 
C2N H2N NAP sing 344 n n 
C3N C7N NAP sing 345 n n 
C3N C4N NAP sing 346 n y 
C7N O7N NAP doub 347 n n 
C7N N7N NAP sing 348 n n 
N7N H71N NAP sing 349 n n 
N7N H72N NAP sing 350 n n 
C4N C5N NAP doub 351 n y 
C4N H4N NAP sing 352 n n 
C5N C6N NAP sing 353 n y 
C5N H5N NAP sing 354 n n 
C6N H6N NAP sing 355 n n 
P2B O1X NAP doub 356 n n 
P2B O2X NAP sing 357 n n 
P2B O3X NAP sing 358 n n 
O2X HOP2 NAP sing 359 n n 
O3X HOP3 NAP sing 360 n n 
#
_atom_sites.entry_id                     5QIJ 
_atom_sites.fract_transf_matrix[1][1]    0.010384 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010384 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00503 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 301 301 NAP NAP . 
D 3 HJG A 1 302 302 HJG LG1 . 
E 4 SO4 A 1 303 351 SO4 SO4 . 
F 4 SO4 A 1 304 352 SO4 SO4 . 
G 4 SO4 A 1 305 353 SO4 SO4 . 
H 4 SO4 A 1 306 354 SO4 SO4 . 
I 3 HJG B 1 301 303 HJG LG1 . 
J 2 NAP B 1 302 301 NAP NAP . 
K 3 HJG B 1 303 302 HJG LG1 . 
L 3 HJG B 1 304 303 HJG LG1 . 
M 4 SO4 B 1 305 351 SO4 SO4 . 
N 4 SO4 B 1 306 352 SO4 SO4 . 
O 4 SO4 B 1 307 353 SO4 SO4 . 
P 5 HOH A 1 401 47 HOH HOH . 
P 5 HOH A 2 402 39 HOH HOH . 
P 5 HOH A 3 403 37 HOH HOH . 
P 5 HOH A 4 404 38 HOH HOH . 
P 5 HOH A 5 405 45 HOH HOH . 
P 5 HOH A 6 406 9 HOH HOH . 
P 5 HOH A 7 407 41 HOH HOH . 
P 5 HOH A 8 408 43 HOH HOH . 
P 5 HOH A 9 409 1 HOH HOH . 
P 5 HOH A 10 410 16 HOH HOH . 
P 5 HOH A 11 411 36 HOH HOH . 
P 5 HOH A 12 412 27 HOH HOH . 
P 5 HOH A 13 413 42 HOH HOH . 
P 5 HOH A 14 414 44 HOH HOH . 
P 5 HOH A 15 415 35 HOH HOH . 
P 5 HOH A 16 416 24 HOH HOH . 
P 5 HOH A 17 417 10 HOH HOH . 
P 5 HOH A 18 418 46 HOH HOH . 
P 5 HOH A 19 419 49 HOH HOH . 
P 5 HOH A 20 420 51 HOH HOH . 
P 5 HOH A 21 421 48 HOH HOH . 
Q 5 HOH B 1 401 3 HOH HOH . 
Q 5 HOH B 2 402 26 HOH HOH . 
Q 5 HOH B 3 403 2 HOH HOH . 
Q 5 HOH B 4 404 29 HOH HOH . 
Q 5 HOH B 5 405 12 HOH HOH . 
Q 5 HOH B 6 406 25 HOH HOH . 
Q 5 HOH B 7 407 5 HOH HOH . 
Q 5 HOH B 8 408 34 HOH HOH . 
Q 5 HOH B 9 409 33 HOH HOH . 
Q 5 HOH B 10 410 8 HOH HOH . 
Q 5 HOH B 11 411 4 HOH HOH . 
Q 5 HOH B 12 412 23 HOH HOH . 
Q 5 HOH B 13 413 20 HOH HOH . 
Q 5 HOH B 14 414 13 HOH HOH . 
Q 5 HOH B 15 415 15 HOH HOH . 
Q 5 HOH B 16 416 18 HOH HOH . 
Q 5 HOH B 17 417 6 HOH HOH . 
Q 5 HOH B 18 418 31 HOH HOH . 
Q 5 HOH B 19 419 19 HOH HOH . 
Q 5 HOH B 20 420 32 HOH HOH . 
Q 5 HOH B 21 421 28 HOH HOH . 
Q 5 HOH B 22 422 30 HOH HOH . 
Q 5 HOH B 23 423 17 HOH HOH . 
Q 5 HOH B 24 424 40 HOH HOH . 
Q 5 HOH B 25 425 21 HOH HOH . 
Q 5 HOH B 26 426 14 HOH HOH . 
Q 5 HOH B 27 427 11 HOH HOH . 
Q 5 HOH B 28 428 22 HOH HOH . 
Q 5 HOH B 29 429 7 HOH HOH . 
Q 5 HOH B 30 430 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . J 2 0.487 34.924 12.003 1 64.18 ? PA NAP 302 B 1 
HETATM 2 O O1A NAP . . . J 2 -0.524 35.227 10.964 1 62.68 ? O1A NAP 302 B 1 
HETATM 3 O O2A NAP . . . J 2 1.916 34.779 11.48 1 68.81 ? O2A NAP 302 B 1 
HETATM 4 O O5B NAP . . . J 2 0.623 36.106 13.07 1 70.77 ? O5B NAP 302 B 1 
HETATM 5 C C5B NAP . . . J 2 1.63 36.176 14.098 1 77.2 ? C5B NAP 302 B 1 
HETATM 6 C C4B NAP . . . J 2 1.468 37.502 14.795 1 77.76 ? C4B NAP 302 B 1 
HETATM 7 O O4B NAP . . . J 2 2.572 37.709 15.712 1 74.78 ? O4B NAP 302 B 1 
HETATM 8 C C3B NAP . . . J 2 1.434 38.719 13.868 1 77.63 ? C3B NAP 302 B 1 
HETATM 9 O O3B NAP . . . J 2 0.518 39.717 14.304 1 77.66 ? O3B NAP 302 B 1 
HETATM 10 C C2B NAP . . . J 2 2.871 39.216 13.936 1 75.76 ? C2B NAP 302 B 1 
HETATM 11 O O2B NAP . . . J 2 2.96 40.612 13.589 1 71.92 ? O2B NAP 302 B 1 
HETATM 12 C C1B NAP . . . J 2 3.243 38.909 15.388 1 72.54 ? C1B NAP 302 B 1 
HETATM 13 N N9A NAP . . . J 2 4.667 38.733 15.651 1 64.15 ? N9A NAP 302 B 1 
HETATM 14 C C8A NAP . . . J 2 5.583 38.108 14.844 1 66.4 ? C8A NAP 302 B 1 
HETATM 15 N N7A NAP . . . J 2 6.82 38.203 15.265 1 63.15 ? N7A NAP 302 B 1 
HETATM 16 C C5A NAP . . . J 2 6.713 38.933 16.439 1 61.32 ? C5A NAP 302 B 1 
HETATM 17 C C6A NAP . . . J 2 7.676 39.403 17.357 1 61.27 ? C6A NAP 302 B 1 
HETATM 18 N N6A NAP . . . J 2 8.995 39.227 17.209 1 62.63 ? N6A NAP 302 B 1 
HETATM 19 N N1A NAP . . . J 2 7.234 40.124 18.413 1 59.9 ? N1A NAP 302 B 1 
HETATM 20 C C2A NAP . . . J 2 5.924 40.366 18.524 1 60.2 ? C2A NAP 302 B 1 
HETATM 21 N N3A NAP . . . J 2 4.927 39.969 17.73 1 58.95 ? N3A NAP 302 B 1 
HETATM 22 C C4A NAP . . . J 2 5.39 39.257 16.694 1 60.92 ? C4A NAP 302 B 1 
HETATM 23 O O3 NAP . . . J 2 0.095 33.756 13.021 1 60.68 ? O3 NAP 302 B 1 
HETATM 24 P PN NAP . . . J 2 -1.193 32.824 13.188 1 58.08 ? PN NAP 302 B 1 
HETATM 25 O O1N NAP . . . J 2 -1.069 31.745 12.184 1 58.43 ? O1N NAP 302 B 1 
HETATM 26 O O2N NAP . . . J 2 -2.423 33.646 13.208 1 59.36 ? O2N NAP 302 B 1 
HETATM 27 O O5D NAP . . . J 2 -0.917 32.2 14.632 1 62.68 ? O5D NAP 302 B 1 
HETATM 28 C C5D NAP . . . J 2 -1.504 32.712 15.843 1 71.13 ? C5D NAP 302 B 1 
HETATM 29 C C4D NAP . . . J 2 -1.318 31.689 16.934 1 74.41 ? C4D NAP 302 B 1 
HETATM 30 O O4D NAP . . . J 2 -1.943 30.444 16.547 1 75.41 ? O4D NAP 302 B 1 
HETATM 31 C C3D NAP . . . J 2 0.123 31.324 17.271 1 73.79 ? C3D NAP 302 B 1 
HETATM 32 O O3D NAP . . . J 2 0.325 31.234 18.679 1 70.91 ? O3D NAP 302 B 1 
HETATM 33 C C2D NAP . . . J 2 0.278 29.978 16.573 1 74.55 ? C2D NAP 302 B 1 
HETATM 34 O O2D NAP . . . J 2 1.186 29.159 17.288 1 75.38 ? O2D NAP 302 B 1 
HETATM 35 C C1D NAP . . . J 2 -1.11 29.34 16.766 1 74.41 ? C1D NAP 302 B 1 
HETATM 36 N N1N NAP . . . J 2 -1.404 28.281 15.691 1 71.65 ? N1N NAP 302 B 1 
HETATM 37 C C2N NAP . . . J 2 -1.554 28.672 14.353 1 72.53 ? C2N NAP 302 B 1 
HETATM 38 C C3N NAP . . . J 2 -1.833 27.733 13.374 1 71.21 ? C3N NAP 302 B 1 
HETATM 39 C C7N NAP . . . J 2 -2.189 28.109 11.954 1 69.08 ? C7N NAP 302 B 1 
HETATM 40 O O7N NAP . . . J 2 -2.343 27.24 11.132 1 65.83 ? O7N NAP 302 B 1 
HETATM 41 N N7N NAP . . . J 2 -2.331 29.396 11.653 1 74.39 ? N7N NAP 302 B 1 
HETATM 42 C C4N NAP . . . J 2 -1.912 26.394 13.747 1 72.29 ? C4N NAP 302 B 1 
HETATM 43 C C5N NAP . . . J 2 -1.753 26.023 15.072 1 70.43 ? C5N NAP 302 B 1 
HETATM 44 C C6N NAP . . . J 2 -1.511 26.983 16.033 1 70.78 ? C6N NAP 302 B 1 
HETATM 45 P P2B NAP . . . J 2 4.329 41.347 13.218 1 69.54 ? P2B NAP 302 B 1 
HETATM 46 O O1X NAP . . . J 2 5.124 41.534 14.419 1 63.1 ? O1X NAP 302 B 1 
HETATM 47 O O2X NAP . . . J 2 5.033 40.535 12.123 1 77.06 ? O2X NAP 302 B 1 
HETATM 48 O O3X NAP . . . J 2 3.826 42.634 12.597 1 77.15 ? O3X NAP 302 B 1 
HETATM 49 H HOA2 NAP . . . J 2 2.696 34.283 11.843 0 76.04 ? HOA2 NAP 302 B 1 
HETATM 50 H H51A NAP . . . J 2 1.39 35.362 14.78 0 81.13 ? H51A NAP 302 B 1 
HETATM 51 H H52A NAP . . . J 2 2.634 36.014 13.71 0 81.13 ? H52A NAP 302 B 1 
HETATM 52 H H4B NAP . . . J 2 0.604 37.465 15.453 0 81.14 ? H4B NAP 302 B 1 
HETATM 53 H H3B NAP . . . J 2 1.187 38.421 12.851 0 81.19 ? H3B NAP 302 B 1 
HETATM 54 H HO3A NAP . . . J 2 -0.378 39.431 13.986 0 80.93 ? HO3A NAP 302 B 1 
HETATM 55 H H2B NAP . . . J 2 3.446 38.64 13.213 0 80.99 ? H2B NAP 302 B 1 
HETATM 56 H H1B NAP . . . J 2 2.882 39.67 16.078 0 77.65 ? H1B NAP 302 B 1 
HETATM 57 H H8A NAP . . . J 2 5.316 37.563 13.94 0 72.23 ? H8A NAP 302 B 1 
HETATM 58 H H61A NAP . . . J 2 9.364 38.735 16.402 0 65.3 ? H61A NAP 302 B 1 
HETATM 59 H H62A NAP . . . J 2 9.662 39.577 17.889 0 65.3 ? H62A NAP 302 B 1 
HETATM 60 H H2A NAP . . . J 2 5.626 41.024 19.338 0 66.4 ? H2A NAP 302 B 1 
HETATM 61 H H51N NAP . . . J 2 -2.55 33.004 15.756 0 76.53 ? H51N NAP 302 B 1 
HETATM 62 H H52N NAP . . . J 2 -0.947 33.626 16.041 0 76.53 ? H52N NAP 302 B 1 
HETATM 63 H H4D NAP . . . J 2 -1.847 32.016 17.827 0 77.35 ? H4D NAP 302 B 1 
HETATM 64 H H3D NAP . . . J 2 0.845 32.018 16.845 0 75.57 ? H3D NAP 302 B 1 
HETATM 65 H HO3N NAP . . . J 2 -0.059 30.377 19 0 72.61 ? HO3N NAP 302 B 1 
HETATM 66 H H2D NAP . . . J 2 0.58 30.065 15.531 0 77.17 ? H2D NAP 302 B 1 
HETATM 67 H HO2N NAP . . . J 2 2.055 29.169 16.809 0 78.81 ? HO2N NAP 302 B 1 
HETATM 68 H H1D NAP . . . J 2 -1.32 28.889 17.734 0 77.42 ? H1D NAP 302 B 1 
HETATM 69 H H2N NAP . . . J 2 -1.397 29.721 14.114 0 76.73 ? H2N NAP 302 B 1 
HETATM 70 H H71N NAP . . . J 2 -2.576 29.672 10.708 0 78 ? H71N NAP 302 B 1 
HETATM 71 H H72N NAP . . . J 2 -2.254 30.174 12.299 0 78 ? H72N NAP 302 B 1 
HETATM 72 H H4N NAP . . . J 2 -2.081 25.603 13.018 0 75.04 ? H4N NAP 302 B 1 
HETATM 73 H H5N NAP . . . J 2 -1.791 24.976 15.362 0 73.78 ? H5N NAP 302 B 1 
HETATM 74 H H6N NAP . . . J 2 -1.397 26.691 17.073 0 74.07 ? H6N NAP 302 B 1 
HETATM 75 H HOP2 NAP . . . J 2 4.547 40.391 11.269 0 85.59 ? HOP2 NAP 302 B 1 
HETATM 76 H HOP3 NAP . . . J 2 3.233 42.678 11.801 0 85.8 ? HOP3 NAP 302 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           76 
#