data_5QIK # _model_server_result.job_id caJuErc41oFAzMZlvXH9NA _model_server_result.datetime_utc '2024-12-27 02:29:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5QIK # _exptl.entry_id 5QIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QIK _cell.length_a 41.78 _cell.length_b 77.57 _cell.length_c 89.71 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5QIK _atom_sites.fract_transf_matrix[1][1] 0.023935 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J2M A 1 601 1 J2M LG1 . C 3 GOL A 1 602 1 GOL GOL . D 3 GOL A 1 603 2 GOL GOL . E 4 HOH A 1 701 119 HOH HOH . E 4 HOH A 2 702 224 HOH HOH . E 4 HOH A 3 703 62 HOH HOH . E 4 HOH A 4 704 243 HOH HOH . E 4 HOH A 5 705 17 HOH HOH . E 4 HOH A 6 706 4 HOH HOH . E 4 HOH A 7 707 43 HOH HOH . E 4 HOH A 8 708 204 HOH HOH . E 4 HOH A 9 709 106 HOH HOH . E 4 HOH A 10 710 234 HOH HOH . E 4 HOH A 11 711 52 HOH HOH . E 4 HOH A 12 712 55 HOH HOH . E 4 HOH A 13 713 91 HOH HOH . E 4 HOH A 14 714 60 HOH HOH . E 4 HOH A 15 715 20 HOH HOH . E 4 HOH A 16 716 114 HOH HOH . E 4 HOH A 17 717 233 HOH HOH . E 4 HOH A 18 718 116 HOH HOH . E 4 HOH A 19 719 46 HOH HOH . E 4 HOH A 20 720 140 HOH HOH . E 4 HOH A 21 721 242 HOH HOH . E 4 HOH A 22 722 75 HOH HOH . E 4 HOH A 23 723 37 HOH HOH . E 4 HOH A 24 724 132 HOH HOH . E 4 HOH A 25 725 101 HOH HOH . E 4 HOH A 26 726 10 HOH HOH . E 4 HOH A 27 727 162 HOH HOH . E 4 HOH A 28 728 105 HOH HOH . E 4 HOH A 29 729 98 HOH HOH . E 4 HOH A 30 730 84 HOH HOH . E 4 HOH A 31 731 87 HOH HOH . E 4 HOH A 32 732 94 HOH HOH . E 4 HOH A 33 733 89 HOH HOH . E 4 HOH A 34 734 123 HOH HOH . E 4 HOH A 35 735 47 HOH HOH . E 4 HOH A 36 736 48 HOH HOH . E 4 HOH A 37 737 90 HOH HOH . E 4 HOH A 38 738 172 HOH HOH . E 4 HOH A 39 739 86 HOH HOH . E 4 HOH A 40 740 213 HOH HOH . E 4 HOH A 41 741 131 HOH HOH . E 4 HOH A 42 742 22 HOH HOH . E 4 HOH A 43 743 64 HOH HOH . E 4 HOH A 44 744 168 HOH HOH . E 4 HOH A 45 745 19 HOH HOH . E 4 HOH A 46 746 82 HOH HOH . E 4 HOH A 47 747 176 HOH HOH . E 4 HOH A 48 748 122 HOH HOH . E 4 HOH A 49 749 8 HOH HOH . E 4 HOH A 50 750 28 HOH HOH . E 4 HOH A 51 751 63 HOH HOH . E 4 HOH A 52 752 174 HOH HOH . E 4 HOH A 53 753 187 HOH HOH . E 4 HOH A 54 754 45 HOH HOH . E 4 HOH A 55 755 85 HOH HOH . E 4 HOH A 56 756 145 HOH HOH . E 4 HOH A 57 757 182 HOH HOH . E 4 HOH A 58 758 126 HOH HOH . E 4 HOH A 59 759 158 HOH HOH . E 4 HOH A 60 760 218 HOH HOH . E 4 HOH A 61 761 136 HOH HOH . E 4 HOH A 62 762 70 HOH HOH . E 4 HOH A 63 763 166 HOH HOH . E 4 HOH A 64 764 3 HOH HOH . E 4 HOH A 65 765 66 HOH HOH . E 4 HOH A 66 766 192 HOH HOH . E 4 HOH A 67 767 33 HOH HOH . E 4 HOH A 68 768 109 HOH HOH . E 4 HOH A 69 769 175 HOH HOH . E 4 HOH A 70 770 2 HOH HOH . E 4 HOH A 71 771 115 HOH HOH . E 4 HOH A 72 772 117 HOH HOH . E 4 HOH A 73 773 24 HOH HOH . E 4 HOH A 74 774 73 HOH HOH . E 4 HOH A 75 775 121 HOH HOH . E 4 HOH A 76 776 231 HOH HOH . E 4 HOH A 77 777 110 HOH HOH . E 4 HOH A 78 778 14 HOH HOH . E 4 HOH A 79 779 111 HOH HOH . E 4 HOH A 80 780 38 HOH HOH . E 4 HOH A 81 781 36 HOH HOH . E 4 HOH A 82 782 238 HOH HOH . E 4 HOH A 83 783 209 HOH HOH . E 4 HOH A 84 784 61 HOH HOH . E 4 HOH A 85 785 189 HOH HOH . E 4 HOH A 86 786 118 HOH HOH . E 4 HOH A 87 787 80 HOH HOH . E 4 HOH A 88 788 211 HOH HOH . E 4 HOH A 89 789 69 HOH HOH . E 4 HOH A 90 790 159 HOH HOH . E 4 HOH A 91 791 236 HOH HOH . E 4 HOH A 92 792 74 HOH HOH . E 4 HOH A 93 793 6 HOH HOH . E 4 HOH A 94 794 108 HOH HOH . E 4 HOH A 95 795 143 HOH HOH . E 4 HOH A 96 796 49 HOH HOH . E 4 HOH A 97 797 29 HOH HOH . E 4 HOH A 98 798 32 HOH HOH . E 4 HOH A 99 799 59 HOH HOH . E 4 HOH A 100 800 148 HOH HOH . E 4 HOH A 101 801 34 HOH HOH . E 4 HOH A 102 802 57 HOH HOH . E 4 HOH A 103 803 58 HOH HOH . E 4 HOH A 104 804 39 HOH HOH . E 4 HOH A 105 805 160 HOH HOH . E 4 HOH A 106 806 155 HOH HOH . E 4 HOH A 107 807 154 HOH HOH . E 4 HOH A 108 808 130 HOH HOH . E 4 HOH A 109 809 42 HOH HOH . E 4 HOH A 110 810 128 HOH HOH . E 4 HOH A 111 811 12 HOH HOH . E 4 HOH A 112 812 41 HOH HOH . E 4 HOH A 113 813 88 HOH HOH . E 4 HOH A 114 814 134 HOH HOH . E 4 HOH A 115 815 173 HOH HOH . E 4 HOH A 116 816 40 HOH HOH . E 4 HOH A 117 817 165 HOH HOH . E 4 HOH A 118 818 185 HOH HOH . E 4 HOH A 119 819 83 HOH HOH . E 4 HOH A 120 820 5 HOH HOH . E 4 HOH A 121 821 99 HOH HOH . E 4 HOH A 122 822 197 HOH HOH . E 4 HOH A 123 823 18 HOH HOH . E 4 HOH A 124 824 79 HOH HOH . E 4 HOH A 125 825 7 HOH HOH . E 4 HOH A 126 826 125 HOH HOH . E 4 HOH A 127 827 21 HOH HOH . E 4 HOH A 128 828 240 HOH HOH . E 4 HOH A 129 829 77 HOH HOH . E 4 HOH A 130 830 186 HOH HOH . E 4 HOH A 131 831 156 HOH HOH . E 4 HOH A 132 832 92 HOH HOH . E 4 HOH A 133 833 54 HOH HOH . E 4 HOH A 134 834 210 HOH HOH . E 4 HOH A 135 835 103 HOH HOH . E 4 HOH A 136 836 120 HOH HOH . E 4 HOH A 137 837 26 HOH HOH . E 4 HOH A 138 838 216 HOH HOH . E 4 HOH A 139 839 23 HOH HOH . E 4 HOH A 140 840 223 HOH HOH . E 4 HOH A 141 841 50 HOH HOH . E 4 HOH A 142 842 235 HOH HOH . E 4 HOH A 143 843 72 HOH HOH . E 4 HOH A 144 844 180 HOH HOH . E 4 HOH A 145 845 214 HOH HOH . E 4 HOH A 146 846 95 HOH HOH . E 4 HOH A 147 847 107 HOH HOH . E 4 HOH A 148 848 141 HOH HOH . E 4 HOH A 149 849 112 HOH HOH . E 4 HOH A 150 850 27 HOH HOH . E 4 HOH A 151 851 31 HOH HOH . E 4 HOH A 152 852 104 HOH HOH . E 4 HOH A 153 853 237 HOH HOH . E 4 HOH A 154 854 67 HOH HOH . E 4 HOH A 155 855 25 HOH HOH . E 4 HOH A 156 856 71 HOH HOH . E 4 HOH A 157 857 150 HOH HOH . E 4 HOH A 158 858 44 HOH HOH . E 4 HOH A 159 859 65 HOH HOH . E 4 HOH A 160 860 196 HOH HOH . E 4 HOH A 161 861 144 HOH HOH . E 4 HOH A 162 862 198 HOH HOH . E 4 HOH A 163 863 51 HOH HOH . E 4 HOH A 164 864 230 HOH HOH . E 4 HOH A 165 865 16 HOH HOH . E 4 HOH A 166 866 113 HOH HOH . E 4 HOH A 167 867 9 HOH HOH . E 4 HOH A 168 868 135 HOH HOH . E 4 HOH A 169 869 78 HOH HOH . E 4 HOH A 170 870 219 HOH HOH . E 4 HOH A 171 871 177 HOH HOH . E 4 HOH A 172 872 184 HOH HOH . E 4 HOH A 173 873 201 HOH HOH . E 4 HOH A 174 874 53 HOH HOH . E 4 HOH A 175 875 222 HOH HOH . E 4 HOH A 176 876 142 HOH HOH . E 4 HOH A 177 877 246 HOH HOH . E 4 HOH A 178 878 35 HOH HOH . E 4 HOH A 179 879 225 HOH HOH . E 4 HOH A 180 880 15 HOH HOH . E 4 HOH A 181 881 232 HOH HOH . E 4 HOH A 182 882 203 HOH HOH . E 4 HOH A 183 883 11 HOH HOH . E 4 HOH A 184 884 56 HOH HOH . E 4 HOH A 185 885 164 HOH HOH . E 4 HOH A 186 886 191 HOH HOH . E 4 HOH A 187 887 133 HOH HOH . E 4 HOH A 188 888 200 HOH HOH . E 4 HOH A 189 889 13 HOH HOH . E 4 HOH A 190 890 81 HOH HOH . E 4 HOH A 191 891 30 HOH HOH . E 4 HOH A 192 892 149 HOH HOH . E 4 HOH A 193 893 205 HOH HOH . E 4 HOH A 194 894 181 HOH HOH . E 4 HOH A 195 895 217 HOH HOH . E 4 HOH A 196 896 227 HOH HOH . E 4 HOH A 197 897 188 HOH HOH . E 4 HOH A 198 898 76 HOH HOH . E 4 HOH A 199 899 96 HOH HOH . E 4 HOH A 200 900 124 HOH HOH . E 4 HOH A 201 901 139 HOH HOH . E 4 HOH A 202 902 206 HOH HOH . E 4 HOH A 203 903 199 HOH HOH . E 4 HOH A 204 904 163 HOH HOH . E 4 HOH A 205 905 167 HOH HOH . E 4 HOH A 206 906 129 HOH HOH . E 4 HOH A 207 907 127 HOH HOH . E 4 HOH A 208 908 170 HOH HOH . E 4 HOH A 209 909 220 HOH HOH . E 4 HOH A 210 910 100 HOH HOH . E 4 HOH A 211 911 239 HOH HOH . E 4 HOH A 212 912 102 HOH HOH . E 4 HOH A 213 913 93 HOH HOH . E 4 HOH A 214 914 202 HOH HOH . E 4 HOH A 215 915 193 HOH HOH . E 4 HOH A 216 916 171 HOH HOH . E 4 HOH A 217 917 244 HOH HOH . E 4 HOH A 218 918 1 HOH HOH . E 4 HOH A 219 919 215 HOH HOH . E 4 HOH A 220 920 97 HOH HOH . E 4 HOH A 221 921 68 HOH HOH . E 4 HOH A 222 922 178 HOH HOH . E 4 HOH A 223 923 207 HOH HOH . E 4 HOH A 224 924 195 HOH HOH . E 4 HOH A 225 925 228 HOH HOH . E 4 HOH A 226 926 146 HOH HOH . E 4 HOH A 227 927 161 HOH HOH . E 4 HOH A 228 928 221 HOH HOH . E 4 HOH A 229 929 157 HOH HOH . E 4 HOH A 230 930 153 HOH HOH . E 4 HOH A 231 931 151 HOH HOH . E 4 HOH A 232 932 194 HOH HOH . E 4 HOH A 233 933 226 HOH HOH . E 4 HOH A 234 934 229 HOH HOH . E 4 HOH A 235 935 169 HOH HOH . E 4 HOH A 236 936 147 HOH HOH . E 4 HOH A 237 937 138 HOH HOH . E 4 HOH A 238 938 152 HOH HOH . E 4 HOH A 239 939 137 HOH HOH . E 4 HOH A 240 940 183 HOH HOH . E 4 HOH A 241 941 190 HOH HOH . E 4 HOH A 242 942 179 HOH HOH . E 4 HOH A 243 943 208 HOH HOH . E 4 HOH A 244 944 241 HOH HOH . E 4 HOH A 245 945 212 HOH HOH . E 4 HOH A 246 946 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 15.128 12.978 -7.677 1 36.17 ? C1 GOL 602 A 1 HETATM 2 O O1 GOL . . . C 3 14.49 13.709 -8.722 1 39.24 ? O1 GOL 602 A 1 HETATM 3 C C2 GOL . . . C 3 16.152 13.848 -6.985 1 33.24 ? C2 GOL 602 A 1 HETATM 4 O O2 GOL . . . C 3 15.493 14.862 -6.224 1 30.6 ? O2 GOL 602 A 1 HETATM 5 C C3 GOL . . . C 3 17.051 13.054 -6.071 1 34.22 ? C3 GOL 602 A 1 HETATM 6 O O3 GOL . . . C 3 18.026 13.907 -5.471 1 30.83 ? O3 GOL 602 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #