data_5QIX # _model_server_result.job_id qEBfA5Q0OYY09VmlJ_itmA _model_server_result.datetime_utc '2025-07-03 19:34:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5QIX # _exptl.entry_id 5QIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.38 _cell.angle_gamma 90 _cell.entry_id 5QIX _cell.length_a 47.554 _cell.length_b 58.334 _cell.length_c 50.333 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 46 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 51 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id J5V _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id J5V _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.668 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5QIX _atom_sites.fract_transf_matrix[1][1] 0.021029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.010429 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 J5V A 1 301 301 J5V LIG . C 3 EDO A 1 302 501 EDO EDO . D 3 EDO A 1 303 601 EDO EDO . E 3 EDO A 1 304 701 EDO EDO . F 3 EDO A 1 305 801 EDO EDO . G 3 EDO A 1 306 901 EDO EDO . H 3 EDO A 1 307 1001 EDO EDO . I 3 EDO A 1 308 1101 EDO EDO . J 4 UNL A 1 309 1 UNL UNL . K 4 UNL A 1 310 1 UNL UNL . L 4 UNL A 1 311 1 UNL UNL . M 5 HOH A 1 401 365 HOH HOH . M 5 HOH A 2 402 40 HOH HOH . M 5 HOH A 3 403 416 HOH HOH . M 5 HOH A 4 404 419 HOH HOH . M 5 HOH A 5 405 179 HOH HOH . M 5 HOH A 6 406 367 HOH HOH . M 5 HOH A 7 407 388 HOH HOH . M 5 HOH A 8 408 55 HOH HOH . M 5 HOH A 9 409 145 HOH HOH . M 5 HOH A 10 410 357 HOH HOH . M 5 HOH A 11 411 103 HOH HOH . M 5 HOH A 12 412 119 HOH HOH . M 5 HOH A 13 413 170 HOH HOH . M 5 HOH A 14 414 79 HOH HOH . M 5 HOH A 15 415 394 HOH HOH . M 5 HOH A 16 416 320 HOH HOH . M 5 HOH A 17 417 85 HOH HOH . M 5 HOH A 18 418 14 HOH HOH . M 5 HOH A 19 419 376 HOH HOH . M 5 HOH A 20 420 38 HOH HOH . M 5 HOH A 21 421 87 HOH HOH . M 5 HOH A 22 422 99 HOH HOH . M 5 HOH A 23 423 154 HOH HOH . M 5 HOH A 24 424 413 HOH HOH . M 5 HOH A 25 425 19 HOH HOH . M 5 HOH A 26 426 17 HOH HOH . M 5 HOH A 27 427 190 HOH HOH . M 5 HOH A 28 428 26 HOH HOH . M 5 HOH A 29 429 114 HOH HOH . M 5 HOH A 30 430 356 HOH HOH . M 5 HOH A 31 431 262 HOH HOH . M 5 HOH A 32 432 111 HOH HOH . M 5 HOH A 33 433 163 HOH HOH . M 5 HOH A 34 434 405 HOH HOH . M 5 HOH A 35 435 352 HOH HOH . M 5 HOH A 36 436 372 HOH HOH . M 5 HOH A 37 437 344 HOH HOH . M 5 HOH A 38 438 401 HOH HOH . M 5 HOH A 39 439 69 HOH HOH . M 5 HOH A 40 440 399 HOH HOH . M 5 HOH A 41 441 150 HOH HOH . M 5 HOH A 42 442 96 HOH HOH . M 5 HOH A 43 443 89 HOH HOH . M 5 HOH A 44 444 42 HOH HOH . M 5 HOH A 45 445 18 HOH HOH . M 5 HOH A 46 446 168 HOH HOH . M 5 HOH A 47 447 67 HOH HOH . M 5 HOH A 48 448 336 HOH HOH . M 5 HOH A 49 449 83 HOH HOH . M 5 HOH A 50 450 218 HOH HOH . M 5 HOH A 51 451 380 HOH HOH . M 5 HOH A 52 452 36 HOH HOH . M 5 HOH A 53 453 247 HOH HOH . M 5 HOH A 54 454 105 HOH HOH . M 5 HOH A 55 455 2 HOH HOH . M 5 HOH A 56 456 108 HOH HOH . M 5 HOH A 57 457 46 HOH HOH . M 5 HOH A 58 458 31 HOH HOH . M 5 HOH A 59 459 398 HOH HOH . M 5 HOH A 60 460 106 HOH HOH . M 5 HOH A 61 461 24 HOH HOH . M 5 HOH A 62 462 53 HOH HOH . M 5 HOH A 63 463 155 HOH HOH . M 5 HOH A 64 464 27 HOH HOH . M 5 HOH A 65 465 43 HOH HOH . M 5 HOH A 66 466 341 HOH HOH . M 5 HOH A 67 467 351 HOH HOH . M 5 HOH A 68 468 52 HOH HOH . M 5 HOH A 69 469 58 HOH HOH . M 5 HOH A 70 470 33 HOH HOH . M 5 HOH A 71 471 56 HOH HOH . M 5 HOH A 72 472 93 HOH HOH . M 5 HOH A 73 473 343 HOH HOH . M 5 HOH A 74 474 7 HOH HOH . M 5 HOH A 75 475 68 HOH HOH . M 5 HOH A 76 476 178 HOH HOH . M 5 HOH A 77 477 41 HOH HOH . M 5 HOH A 78 478 1 HOH HOH . M 5 HOH A 79 479 32 HOH HOH . M 5 HOH A 80 480 338 HOH HOH . M 5 HOH A 81 481 373 HOH HOH . M 5 HOH A 82 482 379 HOH HOH . M 5 HOH A 83 483 160 HOH HOH . M 5 HOH A 84 484 378 HOH HOH . M 5 HOH A 85 485 30 HOH HOH . M 5 HOH A 86 486 358 HOH HOH . M 5 HOH A 87 487 414 HOH HOH . M 5 HOH A 88 488 151 HOH HOH . M 5 HOH A 89 489 370 HOH HOH . M 5 HOH A 90 490 66 HOH HOH . M 5 HOH A 91 491 412 HOH HOH . M 5 HOH A 92 492 12 HOH HOH . M 5 HOH A 93 493 146 HOH HOH . M 5 HOH A 94 494 35 HOH HOH . M 5 HOH A 95 495 407 HOH HOH . M 5 HOH A 96 496 124 HOH HOH . M 5 HOH A 97 497 116 HOH HOH . M 5 HOH A 98 498 8 HOH HOH . M 5 HOH A 99 499 20 HOH HOH . M 5 HOH A 100 500 337 HOH HOH . M 5 HOH A 101 501 71 HOH HOH . M 5 HOH A 102 502 60 HOH HOH . M 5 HOH A 103 503 48 HOH HOH . M 5 HOH A 104 504 166 HOH HOH . M 5 HOH A 105 505 65 HOH HOH . M 5 HOH A 106 506 374 HOH HOH . M 5 HOH A 107 507 102 HOH HOH . M 5 HOH A 108 508 49 HOH HOH . M 5 HOH A 109 509 50 HOH HOH . M 5 HOH A 110 510 97 HOH HOH . M 5 HOH A 111 511 122 HOH HOH . M 5 HOH A 112 512 74 HOH HOH . M 5 HOH A 113 513 167 HOH HOH . M 5 HOH A 114 514 61 HOH HOH . M 5 HOH A 115 515 229 HOH HOH . M 5 HOH A 116 516 348 HOH HOH . M 5 HOH A 117 517 29 HOH HOH . M 5 HOH A 118 518 98 HOH HOH . M 5 HOH A 119 519 165 HOH HOH . M 5 HOH A 120 520 120 HOH HOH . M 5 HOH A 121 521 415 HOH HOH . M 5 HOH A 122 522 359 HOH HOH . M 5 HOH A 123 523 345 HOH HOH . M 5 HOH A 124 524 390 HOH HOH . M 5 HOH A 125 525 72 HOH HOH . M 5 HOH A 126 526 137 HOH HOH . M 5 HOH A 127 527 54 HOH HOH . M 5 HOH A 128 528 59 HOH HOH . M 5 HOH A 129 529 10 HOH HOH . M 5 HOH A 130 530 354 HOH HOH . M 5 HOH A 131 531 76 HOH HOH . M 5 HOH A 132 532 189 HOH HOH . M 5 HOH A 133 533 107 HOH HOH . M 5 HOH A 134 534 64 HOH HOH . M 5 HOH A 135 535 82 HOH HOH . M 5 HOH A 136 536 385 HOH HOH . M 5 HOH A 137 537 90 HOH HOH . M 5 HOH A 138 538 322 HOH HOH . M 5 HOH A 139 539 117 HOH HOH . M 5 HOH A 140 540 360 HOH HOH . M 5 HOH A 141 541 397 HOH HOH . M 5 HOH A 142 542 70 HOH HOH . M 5 HOH A 143 543 62 HOH HOH . M 5 HOH A 144 544 202 HOH HOH . M 5 HOH A 145 545 21 HOH HOH . M 5 HOH A 146 546 157 HOH HOH . M 5 HOH A 147 547 13 HOH HOH . M 5 HOH A 148 548 180 HOH HOH . M 5 HOH A 149 549 121 HOH HOH . M 5 HOH A 150 550 47 HOH HOH . M 5 HOH A 151 551 164 HOH HOH . M 5 HOH A 152 552 57 HOH HOH . M 5 HOH A 153 553 162 HOH HOH . M 5 HOH A 154 554 382 HOH HOH . M 5 HOH A 155 555 6 HOH HOH . M 5 HOH A 156 556 375 HOH HOH . M 5 HOH A 157 557 142 HOH HOH . M 5 HOH A 158 558 148 HOH HOH . M 5 HOH A 159 559 125 HOH HOH . M 5 HOH A 160 560 347 HOH HOH . M 5 HOH A 161 561 22 HOH HOH . M 5 HOH A 162 562 11 HOH HOH . M 5 HOH A 163 563 104 HOH HOH . M 5 HOH A 164 564 101 HOH HOH . M 5 HOH A 165 565 100 HOH HOH . M 5 HOH A 166 566 129 HOH HOH . M 5 HOH A 167 567 44 HOH HOH . M 5 HOH A 168 568 16 HOH HOH . M 5 HOH A 169 569 63 HOH HOH . M 5 HOH A 170 570 197 HOH HOH . M 5 HOH A 171 571 324 HOH HOH . M 5 HOH A 172 572 73 HOH HOH . M 5 HOH A 173 573 406 HOH HOH . M 5 HOH A 174 574 77 HOH HOH . M 5 HOH A 175 575 203 HOH HOH . M 5 HOH A 176 576 342 HOH HOH . M 5 HOH A 177 577 420 HOH HOH . M 5 HOH A 178 578 211 HOH HOH . M 5 HOH A 179 579 45 HOH HOH . M 5 HOH A 180 580 158 HOH HOH . M 5 HOH A 181 581 323 HOH HOH . M 5 HOH A 182 582 396 HOH HOH . M 5 HOH A 183 583 75 HOH HOH . M 5 HOH A 184 584 389 HOH HOH . M 5 HOH A 185 585 152 HOH HOH . M 5 HOH A 186 586 141 HOH HOH . M 5 HOH A 187 587 183 HOH HOH . M 5 HOH A 188 588 201 HOH HOH . M 5 HOH A 189 589 80 HOH HOH . M 5 HOH A 190 590 239 HOH HOH . M 5 HOH A 191 591 391 HOH HOH . M 5 HOH A 192 592 112 HOH HOH . M 5 HOH A 193 593 127 HOH HOH . M 5 HOH A 194 594 153 HOH HOH . M 5 HOH A 195 595 350 HOH HOH . M 5 HOH A 196 596 131 HOH HOH . M 5 HOH A 197 597 78 HOH HOH . M 5 HOH A 198 598 273 HOH HOH . M 5 HOH A 199 599 118 HOH HOH . M 5 HOH A 200 600 371 HOH HOH . M 5 HOH A 201 601 349 HOH HOH . M 5 HOH A 202 602 366 HOH HOH . M 5 HOH A 203 603 234 HOH HOH . M 5 HOH A 204 604 339 HOH HOH . M 5 HOH A 205 605 408 HOH HOH . M 5 HOH A 206 606 185 HOH HOH . M 5 HOH A 207 607 130 HOH HOH . M 5 HOH A 208 608 213 HOH HOH . M 5 HOH A 209 609 156 HOH HOH . M 5 HOH A 210 610 368 HOH HOH . M 5 HOH A 211 611 395 HOH HOH . M 5 HOH A 212 612 110 HOH HOH . M 5 HOH A 213 613 364 HOH HOH . M 5 HOH A 214 614 400 HOH HOH . M 5 HOH A 215 615 363 HOH HOH . M 5 HOH A 216 616 362 HOH HOH . M 5 HOH A 217 617 381 HOH HOH . M 5 HOH A 218 618 161 HOH HOH . M 5 HOH A 219 619 377 HOH HOH . M 5 HOH A 220 620 109 HOH HOH . M 5 HOH A 221 621 335 HOH HOH . M 5 HOH A 222 622 128 HOH HOH . M 5 HOH A 223 623 321 HOH HOH . M 5 HOH A 224 624 393 HOH HOH . M 5 HOH A 225 625 386 HOH HOH . M 5 HOH A 226 626 403 HOH HOH . M 5 HOH A 227 627 173 HOH HOH . M 5 HOH A 228 628 361 HOH HOH . M 5 HOH A 229 629 384 HOH HOH . M 5 HOH A 230 630 224 HOH HOH . M 5 HOH A 231 631 346 HOH HOH . M 5 HOH A 232 632 404 HOH HOH . M 5 HOH A 233 633 340 HOH HOH . M 5 HOH A 234 634 214 HOH HOH . M 5 HOH A 235 635 159 HOH HOH . M 5 HOH A 236 636 94 HOH HOH . M 5 HOH A 237 637 192 HOH HOH . M 5 HOH A 238 638 410 HOH HOH . M 5 HOH A 239 639 171 HOH HOH . M 5 HOH A 240 640 91 HOH HOH . M 5 HOH A 241 641 353 HOH HOH . M 5 HOH A 242 642 149 HOH HOH . M 5 HOH A 243 643 135 HOH HOH . M 5 HOH A 244 644 409 HOH HOH . M 5 HOH A 245 645 204 HOH HOH . M 5 HOH A 246 646 333 HOH HOH . M 5 HOH A 247 647 402 HOH HOH . M 5 HOH A 248 648 383 HOH HOH . M 5 HOH A 249 649 176 HOH HOH . M 5 HOH A 250 650 369 HOH HOH . M 5 HOH A 251 651 143 HOH HOH . M 5 HOH A 252 652 392 HOH HOH . M 5 HOH A 253 653 355 HOH HOH . M 5 HOH A 254 654 411 HOH HOH . M 5 HOH A 255 655 134 HOH HOH . M 5 HOH A 256 656 418 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 24.986 55.287 23.919 1 36.28 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . C 3 26.275 55.525 23.3 1 54.54 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . C 3 23.959 55.657 22.896 1 28.86 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . C 3 24.473 55.15 21.622 1 28.09 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #