data_5QOH # _model_server_result.job_id AH-7EJapzSjKcn0x8N5b8Q _model_server_result.datetime_utc '2024-11-16 13:39:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qoh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 5QOH # _exptl.entry_id 5QOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.168 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N,N-dimethylpyridin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QOH _cell.length_a 48.76 _cell.length_b 61.37 _cell.length_c 66.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H10 N2' _chem_comp.formula_weight 122.168 _chem_comp.id JGD _chem_comp.mon_nstd_flag . _chem_comp.name N,N-dimethylpyridin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C03 N02 JGD sing 197 n n C09 C08 JGD doub 198 n y C09 C04 JGD sing 199 n y C08 N07 JGD sing 200 n y N02 C04 JGD sing 201 n n N02 C01 JGD sing 202 n n C04 C05 JGD doub 203 n y N07 C06 JGD doub 204 n y C05 C06 JGD sing 205 n y C01 H011 JGD sing 206 n n C01 H012 JGD sing 207 n n C01 H013 JGD sing 208 n n C03 H032 JGD sing 209 n n C03 H033 JGD sing 210 n n C03 H031 JGD sing 211 n n C05 H051 JGD sing 212 n n C06 H061 JGD sing 213 n n C08 H081 JGD sing 214 n n C09 H091 JGD sing 215 n n # _atom_sites.entry_id 5QOH _atom_sites.fract_transf_matrix[1][1] 0.020509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016295 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01506 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 2 EDO EDO . C 2 EDO A 1 302 3 EDO EDO . D 3 DMS A 1 303 1 DMS DMS . E 4 ACT A 1 304 1 ACT ACT . F 4 ACT A 1 305 2 ACT ACT . G 5 PEG A 1 306 1 PEG PEG . H 6 JGD A 1 307 1 JGD LIG . I 7 HOH A 1 401 104 HOH HOH . I 7 HOH A 2 402 17 HOH HOH . I 7 HOH A 3 403 12 HOH HOH . I 7 HOH A 4 404 19 HOH HOH . I 7 HOH A 5 405 29 HOH HOH . I 7 HOH A 6 406 8 HOH HOH . I 7 HOH A 7 407 39 HOH HOH . I 7 HOH A 8 408 15 HOH HOH . I 7 HOH A 9 409 96 HOH HOH . I 7 HOH A 10 410 1 HOH HOH . I 7 HOH A 11 411 60 HOH HOH . I 7 HOH A 12 412 66 HOH HOH . I 7 HOH A 13 413 10 HOH HOH . I 7 HOH A 14 414 68 HOH HOH . I 7 HOH A 15 415 83 HOH HOH . I 7 HOH A 16 416 35 HOH HOH . I 7 HOH A 17 417 13 HOH HOH . I 7 HOH A 18 418 67 HOH HOH . I 7 HOH A 19 419 90 HOH HOH . I 7 HOH A 20 420 102 HOH HOH . I 7 HOH A 21 421 59 HOH HOH . I 7 HOH A 22 422 88 HOH HOH . I 7 HOH A 23 423 55 HOH HOH . I 7 HOH A 24 424 80 HOH HOH . I 7 HOH A 25 425 31 HOH HOH . I 7 HOH A 26 426 38 HOH HOH . I 7 HOH A 27 427 32 HOH HOH . I 7 HOH A 28 428 7 HOH HOH . I 7 HOH A 29 429 79 HOH HOH . I 7 HOH A 30 430 85 HOH HOH . I 7 HOH A 31 431 5 HOH HOH . I 7 HOH A 32 432 14 HOH HOH . I 7 HOH A 33 433 23 HOH HOH . I 7 HOH A 34 434 62 HOH HOH . I 7 HOH A 35 435 71 HOH HOH . I 7 HOH A 36 436 76 HOH HOH . I 7 HOH A 37 437 100 HOH HOH . I 7 HOH A 38 438 36 HOH HOH . I 7 HOH A 39 439 43 HOH HOH . I 7 HOH A 40 440 97 HOH HOH . I 7 HOH A 41 441 4 HOH HOH . I 7 HOH A 42 442 95 HOH HOH . I 7 HOH A 43 443 78 HOH HOH . I 7 HOH A 44 444 33 HOH HOH . I 7 HOH A 45 445 18 HOH HOH . I 7 HOH A 46 446 107 HOH HOH . I 7 HOH A 47 447 2 HOH HOH . I 7 HOH A 48 448 46 HOH HOH . I 7 HOH A 49 449 16 HOH HOH . I 7 HOH A 50 450 65 HOH HOH . I 7 HOH A 51 451 28 HOH HOH . I 7 HOH A 52 452 9 HOH HOH . I 7 HOH A 53 453 6 HOH HOH . I 7 HOH A 54 454 24 HOH HOH . I 7 HOH A 55 455 27 HOH HOH . I 7 HOH A 56 456 11 HOH HOH . I 7 HOH A 57 457 25 HOH HOH . I 7 HOH A 58 458 50 HOH HOH . I 7 HOH A 59 459 57 HOH HOH . I 7 HOH A 60 460 22 HOH HOH . I 7 HOH A 61 461 87 HOH HOH . I 7 HOH A 62 462 81 HOH HOH . I 7 HOH A 63 463 52 HOH HOH . I 7 HOH A 64 464 84 HOH HOH . I 7 HOH A 65 465 3 HOH HOH . I 7 HOH A 66 466 72 HOH HOH . I 7 HOH A 67 467 74 HOH HOH . I 7 HOH A 68 468 69 HOH HOH . I 7 HOH A 69 469 30 HOH HOH . I 7 HOH A 70 470 92 HOH HOH . I 7 HOH A 71 471 42 HOH HOH . I 7 HOH A 72 472 47 HOH HOH . I 7 HOH A 73 473 103 HOH HOH . I 7 HOH A 74 474 40 HOH HOH . I 7 HOH A 75 475 106 HOH HOH . I 7 HOH A 76 476 105 HOH HOH . I 7 HOH A 77 477 21 HOH HOH . I 7 HOH A 78 478 94 HOH HOH . I 7 HOH A 79 479 64 HOH HOH . I 7 HOH A 80 480 109 HOH HOH . I 7 HOH A 81 481 91 HOH HOH . I 7 HOH A 82 482 86 HOH HOH . I 7 HOH A 83 483 26 HOH HOH . I 7 HOH A 84 484 75 HOH HOH . I 7 HOH A 85 485 101 HOH HOH . I 7 HOH A 86 486 98 HOH HOH . I 7 HOH A 87 487 51 HOH HOH . I 7 HOH A 88 488 56 HOH HOH . I 7 HOH A 89 489 20 HOH HOH . I 7 HOH A 90 490 93 HOH HOH . I 7 HOH A 91 491 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 JGD . . . H 6 -55.167 18.585 84.514 1 46.36 ? C01 JGD 307 A 1 HETATM 2 N N02 JGD . . . H 6 -54.816 18.677 85.933 1 53.29 ? N02 JGD 307 A 1 HETATM 3 C C03 JGD . . . H 6 -55.323 17.547 86.705 1 47.23 ? C03 JGD 307 A 1 HETATM 4 C C04 JGD . . . H 6 -54.085 19.696 86.511 1 55.02 ? C04 JGD 307 A 1 HETATM 5 C C05 JGD . . . H 6 -53.709 19.673 87.88 1 54.64 ? C05 JGD 307 A 1 HETATM 6 C C06 JGD . . . H 6 -52.698 20.468 88.34 1 54.98 ? C06 JGD 307 A 1 HETATM 7 N N07 JGD . . . H 6 -52.239 21.498 87.609 1 53.77 ? N07 JGD 307 A 1 HETATM 8 C C08 JGD . . . H 6 -52.765 21.737 86.399 1 50.53 ? C08 JGD 307 A 1 HETATM 9 C C09 JGD . . . H 6 -53.684 20.891 85.843 1 54.87 ? C09 JGD 307 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #