data_5QOI
#
_model_server_result.job_id            1-NeCjHr7EPPfbxFj5r0zQ 
_model_server_result.datetime_utc      '2024-10-20 01:28:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qoi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    5QOI 
#
_exptl.entry_id    5QOI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              191.273 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-cycloheptylpyrimidin-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5QOI 
_cell.length_a            48.3 
_cell.length_b            61.09 
_cell.length_c            65.87 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QOI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H17 N3' 
_chem_comp.formula_weight    191.273 
_chem_comp.id                LD4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-cycloheptylpyrimidin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 LD4 doub 197 n y 
C C3 LD4 sing 198 n y 
C1 N LD4 sing 199 n y 
C3 N1 LD4 doub 200 n y 
N C2 LD4 doub 201 n y 
N1 C2 LD4 sing 202 n y 
C2 N2 LD4 sing 203 n n 
N2 C4 LD4 sing 204 n n 
C10 C9 LD4 sing 205 n n 
C10 C4 LD4 sing 206 n n 
C9 C8 LD4 sing 207 n n 
C4 C5 LD4 sing 208 n n 
C8 C7 LD4 sing 209 n n 
C5 C6 LD4 sing 210 n n 
C7 C6 LD4 sing 211 n n 
C4 H1 LD4 sing 212 n n 
C5 H2 LD4 sing 213 n n 
C5 H3 LD4 sing 214 n n 
C6 H4 LD4 sing 215 n n 
C6 H5 LD4 sing 216 n n 
C7 H6 LD4 sing 217 n n 
C7 H7 LD4 sing 218 n n 
C8 H8 LD4 sing 219 n n 
C8 H9 LD4 sing 220 n n 
C10 H10 LD4 sing 221 n n 
C10 H11 LD4 sing 222 n n 
C H12 LD4 sing 223 n n 
C1 H13 LD4 sing 224 n n 
C3 H14 LD4 sing 225 n n 
C9 H15 LD4 sing 226 n n 
C9 H16 LD4 sing 227 n n 
N2 H17 LD4 sing 228 n n 
#
_atom_sites.entry_id                     5QOI 
_atom_sites.fract_transf_matrix[1][1]    0.020704 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016369 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015181 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 301 2 EDO EDO . 
C 2 EDO A 1 302 3 EDO EDO . 
D 3 DMS A 1 303 1 DMS DMS . 
E 4 ACT A 1 304 1 ACT ACT . 
F 4 ACT A 1 305 2 ACT ACT . 
G 5 LD4 A 1 306 1 LD4 LIG . 
H 6 HOH A 1 401 104 HOH HOH . 
H 6 HOH A 2 402 10 HOH HOH . 
H 6 HOH A 3 403 83 HOH HOH . 
H 6 HOH A 4 404 64 HOH HOH . 
H 6 HOH A 5 405 70 HOH HOH . 
H 6 HOH A 6 406 38 HOH HOH . 
H 6 HOH A 7 407 15 HOH HOH . 
H 6 HOH A 8 408 100 HOH HOH . 
H 6 HOH A 9 409 12 HOH HOH . 
H 6 HOH A 10 410 85 HOH HOH . 
H 6 HOH A 11 411 23 HOH HOH . 
H 6 HOH A 12 412 81 HOH HOH . 
H 6 HOH A 13 413 107 HOH HOH . 
H 6 HOH A 14 414 39 HOH HOH . 
H 6 HOH A 15 415 55 HOH HOH . 
H 6 HOH A 16 416 71 HOH HOH . 
H 6 HOH A 17 417 7 HOH HOH . 
H 6 HOH A 18 418 80 HOH HOH . 
H 6 HOH A 19 419 60 HOH HOH . 
H 6 HOH A 20 420 1 HOH HOH . 
H 6 HOH A 21 421 46 HOH HOH . 
H 6 HOH A 22 422 8 HOH HOH . 
H 6 HOH A 23 423 5 HOH HOH . 
H 6 HOH A 24 424 31 HOH HOH . 
H 6 HOH A 25 425 18 HOH HOH . 
H 6 HOH A 26 426 67 HOH HOH . 
H 6 HOH A 27 427 2 HOH HOH . 
H 6 HOH A 28 428 88 HOH HOH . 
H 6 HOH A 29 429 47 HOH HOH . 
H 6 HOH A 30 430 13 HOH HOH . 
H 6 HOH A 31 431 33 HOH HOH . 
H 6 HOH A 32 432 62 HOH HOH . 
H 6 HOH A 33 433 35 HOH HOH . 
H 6 HOH A 34 434 90 HOH HOH . 
H 6 HOH A 35 435 29 HOH HOH . 
H 6 HOH A 36 436 68 HOH HOH . 
H 6 HOH A 37 437 17 HOH HOH . 
H 6 HOH A 38 438 79 HOH HOH . 
H 6 HOH A 39 439 9 HOH HOH . 
H 6 HOH A 40 440 95 HOH HOH . 
H 6 HOH A 41 441 102 HOH HOH . 
H 6 HOH A 42 442 3 HOH HOH . 
H 6 HOH A 43 443 65 HOH HOH . 
H 6 HOH A 44 444 4 HOH HOH . 
H 6 HOH A 45 445 6 HOH HOH . 
H 6 HOH A 46 446 97 HOH HOH . 
H 6 HOH A 47 447 96 HOH HOH . 
H 6 HOH A 48 448 14 HOH HOH . 
H 6 HOH A 49 449 11 HOH HOH . 
H 6 HOH A 50 450 59 HOH HOH . 
H 6 HOH A 51 451 30 HOH HOH . 
H 6 HOH A 52 452 86 HOH HOH . 
H 6 HOH A 53 453 21 HOH HOH . 
H 6 HOH A 54 454 106 HOH HOH . 
H 6 HOH A 55 455 27 HOH HOH . 
H 6 HOH A 56 456 103 HOH HOH . 
H 6 HOH A 57 457 16 HOH HOH . 
H 6 HOH A 58 458 43 HOH HOH . 
H 6 HOH A 59 459 74 HOH HOH . 
H 6 HOH A 60 460 94 HOH HOH . 
H 6 HOH A 61 461 25 HOH HOH . 
H 6 HOH A 62 462 50 HOH HOH . 
H 6 HOH A 63 463 19 HOH HOH . 
H 6 HOH A 64 464 36 HOH HOH . 
H 6 HOH A 65 465 40 HOH HOH . 
H 6 HOH A 66 466 87 HOH HOH . 
H 6 HOH A 67 467 57 HOH HOH . 
H 6 HOH A 68 468 75 HOH HOH . 
H 6 HOH A 69 469 42 HOH HOH . 
H 6 HOH A 70 470 78 HOH HOH . 
H 6 HOH A 71 471 72 HOH HOH . 
H 6 HOH A 72 472 69 HOH HOH . 
H 6 HOH A 73 473 84 HOH HOH . 
H 6 HOH A 74 474 109 HOH HOH . 
H 6 HOH A 75 475 28 HOH HOH . 
H 6 HOH A 76 476 101 HOH HOH . 
H 6 HOH A 77 477 105 HOH HOH . 
H 6 HOH A 78 478 52 HOH HOH . 
H 6 HOH A 79 479 92 HOH HOH . 
H 6 HOH A 80 480 26 HOH HOH . 
H 6 HOH A 81 481 91 HOH HOH . 
H 6 HOH A 82 482 20 HOH HOH . 
H 6 HOH A 83 483 98 HOH HOH . 
H 6 HOH A 84 484 51 HOH HOH . 
H 6 HOH A 85 485 56 HOH HOH . 
H 6 HOH A 86 486 93 HOH HOH . 
H 6 HOH A 87 487 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LD4 . . . G 5 -37.648 18.94 77.606 0.26 40.51 ? N1 LD4 306 A 1 
HETATM 2 C C4 LD4 . . . G 5 -38.79 19.774 80.179 0.26 38.89 ? C4 LD4 306 A 1 
HETATM 3 C C5 LD4 . . . G 5 -38.762 19.33 81.693 0.26 39.64 ? C5 LD4 306 A 1 
HETATM 4 C C6 LD4 . . . G 5 -39.701 20.097 82.641 0.26 39.02 ? C6 LD4 306 A 1 
HETATM 5 C C7 LD4 . . . G 5 -41.14 19.969 82.184 0.26 39.18 ? C7 LD4 306 A 1 
HETATM 6 C C8 LD4 . . . G 5 -41.638 21.135 81.361 0.26 38.06 ? C8 LD4 306 A 1 
HETATM 7 C C10 LD4 . . . G 5 -39.592 21.072 79.922 0.26 38.96 ? C10 LD4 306 A 1 
HETATM 8 N N LD4 . . . G 5 -39.495 17.281 77.413 0.26 40.15 ? N LD4 306 A 1 
HETATM 9 C C LD4 . . . G 5 -37.8 17.476 75.657 0.26 40.49 ? C LD4 306 A 1 
HETATM 10 C C1 LD4 . . . G 5 -38.97 16.902 76.224 0.26 39.93 ? C1 LD4 306 A 1 
HETATM 11 C C2 LD4 . . . G 5 -38.815 18.313 78.094 0.26 40.2 ? C2 LD4 306 A 1 
HETATM 12 C C3 LD4 . . . G 5 -37.184 18.499 76.401 0.26 40.61 ? C3 LD4 306 A 1 
HETATM 13 C C9 LD4 . . . G 5 -41.122 21.011 79.947 0.26 38.56 ? C9 LD4 306 A 1 
HETATM 14 N N2 LD4 . . . G 5 -39.359 18.688 79.324 0.26 39.88 ? N2 LD4 306 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#