data_5QOK # _model_server_result.job_id 348O3t7Z11PS6iCnGKHfHw _model_server_result.datetime_utc '2024-11-22 16:42:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5QOK # _exptl.entry_id 5QOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QOK _cell.length_a 48.16 _cell.length_b 61.09 _cell.length_c 65.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 122 n n S C1 DMS sing 123 n n S C2 DMS sing 124 n n C1 H11 DMS sing 125 n n C1 H12 DMS sing 126 n n C1 H13 DMS sing 127 n n C2 H21 DMS sing 128 n n C2 H22 DMS sing 129 n n C2 H23 DMS sing 130 n n # _atom_sites.entry_id 5QOK _atom_sites.fract_transf_matrix[1][1] 0.020764 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016369 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015214 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 3 EDO EDO . C 3 DMS A 1 302 1 DMS DMS . D 4 ACT A 1 303 1 ACT ACT . E 4 ACT A 1 304 2 ACT ACT . F 5 PEG A 1 305 1 PEG PEG . G 6 AWS A 1 306 1 AWS LIG . H 7 HOH A 1 401 65 HOH HOH . H 7 HOH A 2 402 100 HOH HOH . H 7 HOH A 3 403 85 HOH HOH . H 7 HOH A 4 404 28 HOH HOH . H 7 HOH A 5 405 38 HOH HOH . H 7 HOH A 6 406 70 HOH HOH . H 7 HOH A 7 407 43 HOH HOH . H 7 HOH A 8 408 71 HOH HOH . H 7 HOH A 9 409 23 HOH HOH . H 7 HOH A 10 410 17 HOH HOH . H 7 HOH A 11 411 1 HOH HOH . H 7 HOH A 12 412 102 HOH HOH . H 7 HOH A 13 413 2 HOH HOH . H 7 HOH A 14 414 32 HOH HOH . H 7 HOH A 15 415 13 HOH HOH . H 7 HOH A 16 416 7 HOH HOH . H 7 HOH A 17 417 3 HOH HOH . H 7 HOH A 18 418 5 HOH HOH . H 7 HOH A 19 419 83 HOH HOH . H 7 HOH A 20 420 78 HOH HOH . H 7 HOH A 21 421 11 HOH HOH . H 7 HOH A 22 422 80 HOH HOH . H 7 HOH A 23 423 4 HOH HOH . H 7 HOH A 24 424 24 HOH HOH . H 7 HOH A 25 425 22 HOH HOH . H 7 HOH A 26 426 60 HOH HOH . H 7 HOH A 27 427 76 HOH HOH . H 7 HOH A 28 428 27 HOH HOH . H 7 HOH A 29 429 68 HOH HOH . H 7 HOH A 30 430 94 HOH HOH . H 7 HOH A 31 431 86 HOH HOH . H 7 HOH A 32 432 10 HOH HOH . H 7 HOH A 33 433 35 HOH HOH . H 7 HOH A 34 434 79 HOH HOH . H 7 HOH A 35 435 50 HOH HOH . H 7 HOH A 36 436 14 HOH HOH . H 7 HOH A 37 437 20 HOH HOH . H 7 HOH A 38 438 30 HOH HOH . H 7 HOH A 39 439 25 HOH HOH . H 7 HOH A 40 440 8 HOH HOH . H 7 HOH A 41 441 29 HOH HOH . H 7 HOH A 42 442 74 HOH HOH . H 7 HOH A 43 443 31 HOH HOH . H 7 HOH A 44 444 69 HOH HOH . H 7 HOH A 45 445 92 HOH HOH . H 7 HOH A 46 446 91 HOH HOH . H 7 HOH A 47 447 18 HOH HOH . H 7 HOH A 48 448 72 HOH HOH . H 7 HOH A 49 449 6 HOH HOH . H 7 HOH A 50 450 90 HOH HOH . H 7 HOH A 51 451 40 HOH HOH . H 7 HOH A 52 452 101 HOH HOH . H 7 HOH A 53 453 42 HOH HOH . H 7 HOH A 54 454 107 HOH HOH . H 7 HOH A 55 455 75 HOH HOH . H 7 HOH A 56 456 57 HOH HOH . H 7 HOH A 57 457 103 HOH HOH . H 7 HOH A 58 458 33 HOH HOH . H 7 HOH A 59 459 106 HOH HOH . H 7 HOH A 60 460 26 HOH HOH . H 7 HOH A 61 461 56 HOH HOH . H 7 HOH A 62 462 105 HOH HOH . H 7 HOH A 63 463 41 HOH HOH . H 7 HOH A 64 464 98 HOH HOH . H 7 HOH A 65 465 47 HOH HOH . H 7 HOH A 66 466 51 HOH HOH . H 7 HOH A 67 467 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -58.296 16.077 74.874 1 63.46 ? S DMS 302 A 1 HETATM 2 O O DMS . . . C 3 -56.858 16.024 75.165 1 76.41 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . C 3 -58.885 17.504 75.593 1 65.91 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . C 3 -58.431 16.407 73.208 1 61.02 ? C2 DMS 302 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #