data_5QOL # _model_server_result.job_id pFXaEBJftSXuhYc6sQKU9Q _model_server_result.datetime_utc '2024-11-27 19:03:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5QOL # _exptl.entry_id 5QOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.29 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (azepan-1-yl)(2H-1,3-benzodioxol-5-yl)methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QOL _cell.length_a 48.27 _cell.length_b 60.97 _cell.length_c 65.72 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H17 N O3' _chem_comp.formula_weight 247.29 _chem_comp.id JGP _chem_comp.mon_nstd_flag . _chem_comp.name (azepan-1-yl)(2H-1,3-benzodioxol-5-yl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 JGP sing 197 n n C14 C13 JGP sing 198 n n C15 N09 JGP sing 199 n n C11 C10 JGP sing 200 n n C11 C12 JGP sing 201 n n C13 C12 JGP sing 202 n n C10 N09 JGP sing 203 n n N09 C07 JGP sing 204 n n O16 C04 JGP sing 205 n n O16 C17 JGP sing 206 n n C05 C04 JGP doub 207 n y C05 C06 JGP sing 208 n y C07 C06 JGP sing 209 n n C07 O08 JGP doub 210 n n C04 C03 JGP sing 211 n y C06 C01 JGP doub 212 n y C17 O18 JGP sing 213 n n C03 O18 JGP sing 214 n n C03 C02 JGP doub 215 n y C01 C02 JGP sing 216 n y C10 H101 JGP sing 217 n n C10 H102 JGP sing 218 n n C13 H132 JGP sing 219 n n C13 H131 JGP sing 220 n n C15 H152 JGP sing 221 n n C15 H151 JGP sing 222 n n C17 H171 JGP sing 223 n n C17 H172 JGP sing 224 n n C01 H011 JGP sing 225 n n C02 H021 JGP sing 226 n n C05 H051 JGP sing 227 n n C11 H111 JGP sing 228 n n C11 H112 JGP sing 229 n n C12 H121 JGP sing 230 n n C12 H122 JGP sing 231 n n C14 H142 JGP sing 232 n n C14 H141 JGP sing 233 n n # _atom_sites.entry_id 5QOL _atom_sites.fract_transf_matrix[1][1] 0.020717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016402 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 2 EDO EDO . C 2 EDO A 1 302 3 EDO EDO . D 3 DMS A 1 303 1 DMS DMS . E 4 ACT A 1 304 1 ACT ACT . F 4 ACT A 1 305 2 ACT ACT . G 5 JGP A 1 306 1 JGP LIG . H 6 HOH A 1 401 104 HOH HOH . H 6 HOH A 2 402 70 HOH HOH . H 6 HOH A 3 403 83 HOH HOH . H 6 HOH A 4 404 55 HOH HOH . H 6 HOH A 5 405 19 HOH HOH . H 6 HOH A 6 406 97 HOH HOH . H 6 HOH A 7 407 60 HOH HOH . H 6 HOH A 8 408 102 HOH HOH . H 6 HOH A 9 409 65 HOH HOH . H 6 HOH A 10 410 32 HOH HOH . H 6 HOH A 11 411 15 HOH HOH . H 6 HOH A 12 412 10 HOH HOH . H 6 HOH A 13 413 66 HOH HOH . H 6 HOH A 14 414 67 HOH HOH . H 6 HOH A 15 415 71 HOH HOH . H 6 HOH A 16 416 23 HOH HOH . H 6 HOH A 17 417 38 HOH HOH . H 6 HOH A 18 418 76 HOH HOH . H 6 HOH A 19 419 13 HOH HOH . H 6 HOH A 20 420 85 HOH HOH . H 6 HOH A 21 421 100 HOH HOH . H 6 HOH A 22 422 95 HOH HOH . H 6 HOH A 23 423 78 HOH HOH . H 6 HOH A 24 424 39 HOH HOH . H 6 HOH A 25 425 12 HOH HOH . H 6 HOH A 26 426 59 HOH HOH . H 6 HOH A 27 427 5 HOH HOH . H 6 HOH A 28 428 17 HOH HOH . H 6 HOH A 29 429 1 HOH HOH . H 6 HOH A 30 430 6 HOH HOH . H 6 HOH A 31 431 9 HOH HOH . H 6 HOH A 32 432 88 HOH HOH . H 6 HOH A 33 433 16 HOH HOH . H 6 HOH A 34 434 2 HOH HOH . H 6 HOH A 35 435 94 HOH HOH . H 6 HOH A 36 436 31 HOH HOH . H 6 HOH A 37 437 24 HOH HOH . H 6 HOH A 38 438 29 HOH HOH . H 6 HOH A 39 439 36 HOH HOH . H 6 HOH A 40 440 46 HOH HOH . H 6 HOH A 41 441 18 HOH HOH . H 6 HOH A 42 442 90 HOH HOH . H 6 HOH A 43 443 111 HOH HOH . H 6 HOH A 44 444 35 HOH HOH . H 6 HOH A 45 445 80 HOH HOH . H 6 HOH A 46 446 33 HOH HOH . H 6 HOH A 47 447 96 HOH HOH . H 6 HOH A 48 448 7 HOH HOH . H 6 HOH A 49 449 68 HOH HOH . H 6 HOH A 50 450 14 HOH HOH . H 6 HOH A 51 451 62 HOH HOH . H 6 HOH A 52 452 30 HOH HOH . H 6 HOH A 53 453 4 HOH HOH . H 6 HOH A 54 454 21 HOH HOH . H 6 HOH A 55 455 27 HOH HOH . H 6 HOH A 56 456 50 HOH HOH . H 6 HOH A 57 457 40 HOH HOH . H 6 HOH A 58 458 22 HOH HOH . H 6 HOH A 59 459 3 HOH HOH . H 6 HOH A 60 460 57 HOH HOH . H 6 HOH A 61 461 8 HOH HOH . H 6 HOH A 62 462 103 HOH HOH . H 6 HOH A 63 463 43 HOH HOH . H 6 HOH A 64 464 25 HOH HOH . H 6 HOH A 65 465 79 HOH HOH . H 6 HOH A 66 466 84 HOH HOH . H 6 HOH A 67 467 69 HOH HOH . H 6 HOH A 68 468 72 HOH HOH . H 6 HOH A 69 469 106 HOH HOH . H 6 HOH A 70 470 11 HOH HOH . H 6 HOH A 71 471 42 HOH HOH . H 6 HOH A 72 472 74 HOH HOH . H 6 HOH A 73 473 47 HOH HOH . H 6 HOH A 74 474 28 HOH HOH . H 6 HOH A 75 475 107 HOH HOH . H 6 HOH A 76 476 75 HOH HOH . H 6 HOH A 77 477 52 HOH HOH . H 6 HOH A 78 478 92 HOH HOH . H 6 HOH A 79 479 105 HOH HOH . H 6 HOH A 80 480 91 HOH HOH . H 6 HOH A 81 481 101 HOH HOH . H 6 HOH A 82 482 98 HOH HOH . H 6 HOH A 83 483 26 HOH HOH . H 6 HOH A 84 484 86 HOH HOH . H 6 HOH A 85 485 110 HOH HOH . H 6 HOH A 86 486 20 HOH HOH . H 6 HOH A 87 487 56 HOH HOH . H 6 HOH A 88 488 51 HOH HOH . H 6 HOH A 89 489 41 HOH HOH . H 6 HOH A 90 490 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JGP . . . G 5 -39.84 18.622 80.866 0.54 26.95 ? C10 JGP 306 A 1 HETATM 2 C C13 JGP . . . G 5 -39.618 21.513 81.665 0.54 27.61 ? C13 JGP 306 A 1 HETATM 3 C C15 JGP . . . G 5 -38.174 19.564 82.485 0.54 26.39 ? C15 JGP 306 A 1 HETATM 4 C C17 JGP . . . G 5 -31.636 19.413 79.574 0.54 36.58 ? C17 JGP 306 A 1 HETATM 5 C C01 JGP . . . G 5 -35.462 18.17 81.661 0.54 31.4 ? C01 JGP 306 A 1 HETATM 6 C C02 JGP . . . G 5 -34.077 18.169 81.867 0.54 32.57 ? C02 JGP 306 A 1 HETATM 7 C C03 JGP . . . G 5 -33.303 18.705 80.881 0.54 33.35 ? C03 JGP 306 A 1 HETATM 8 C C04 JGP . . . G 5 -33.858 19.239 79.732 0.54 34.15 ? C04 JGP 306 A 1 HETATM 9 C C05 JGP . . . G 5 -35.206 19.243 79.508 0.54 30.74 ? C05 JGP 306 A 1 HETATM 10 C C06 JGP . . . G 5 -36.032 18.707 80.514 0.54 29.7 ? C06 JGP 306 A 1 HETATM 11 C C07 JGP . . . G 5 -37.514 18.677 80.214 0.54 29.6 ? C07 JGP 306 A 1 HETATM 12 O O08 JGP . . . G 5 -37.857 18.385 79.067 0.54 27.63 ? O08 JGP 306 A 1 HETATM 13 N N09 JGP . . . G 5 -38.437 18.938 81.177 0.54 26.81 ? N09 JGP 306 A 1 HETATM 14 C C11 JGP . . . G 5 -40.535 19.727 80.093 0.54 28.12 ? C11 JGP 306 A 1 HETATM 15 C C12 JGP . . . G 5 -40.82 20.945 80.95 0.54 26.57 ? C12 JGP 306 A 1 HETATM 16 C C14 JGP . . . G 5 -39.143 20.676 82.846 0.54 28.52 ? C14 JGP 306 A 1 HETATM 17 O O16 JGP . . . G 5 -32.866 19.729 78.912 0.54 35.33 ? O16 JGP 306 A 1 HETATM 18 O O18 JGP . . . G 5 -31.935 18.838 80.849 0.54 36.48 ? O18 JGP 306 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 18 #