data_5QOM # _model_server_result.job_id 9G3lVi5boi2-bvR-KEZPNw _model_server_result.datetime_utc '2025-01-10 08:30:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qom # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 5QOM # _exptl.entry_id 5QOM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.333 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(4-methylpiperidin-1-yl)methyl]-1H-indole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QOM _cell.length_a 47.92 _cell.length_b 61.25 _cell.length_c 65.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QOM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H20 N2' _chem_comp.formula_weight 228.333 _chem_comp.id LDV _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(4-methylpiperidin-1-yl)methyl]-1H-indole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LDV sing 197 n n C6 C2 LDV sing 198 n n C6 C5 LDV sing 199 n n C2 C3 LDV sing 200 n n C5 N1 LDV sing 201 n n C3 C4 LDV sing 202 n n C9 N2 LDV sing 203 n y C9 C8 LDV doub 204 n y N2 C10 LDV sing 205 n y N1 C4 LDV sing 206 n n N1 C7 LDV sing 207 n n C8 C7 LDV sing 208 n n C8 C11 LDV sing 209 n y C10 C11 LDV doub 210 n y C10 C15 LDV sing 211 n y C11 C12 LDV sing 212 n y C15 C14 LDV doub 213 n y C14 C13 LDV sing 214 n y C12 C13 LDV doub 215 n y C4 H2 LDV sing 216 n n C4 H3 LDV sing 217 n n C5 H4 LDV sing 218 n n C5 H5 LDV sing 219 n n C6 H6 LDV sing 220 n n C6 H7 LDV sing 221 n n C7 H8 LDV sing 222 n n C7 H9 LDV sing 223 n n C13 H10 LDV sing 224 n n C15 H11 LDV sing 225 n n C1 H12 LDV sing 226 n n C1 H13 LDV sing 227 n n C1 H14 LDV sing 228 n n C12 H15 LDV sing 229 n n C14 H16 LDV sing 230 n n C2 H17 LDV sing 231 n n C3 H18 LDV sing 232 n n C3 H19 LDV sing 233 n n C9 H20 LDV sing 234 n n N2 H21 LDV sing 235 n n # _atom_sites.entry_id 5QOM _atom_sites.fract_transf_matrix[1][1] 0.020868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 2 EDO EDO . C 2 EDO A 1 302 3 EDO EDO . D 3 DMS A 1 303 1 DMS DMS . E 4 ACT A 1 304 1 ACT ACT . F 4 ACT A 1 305 2 ACT ACT . G 5 PEG A 1 306 1 PEG PEG . H 6 LDV A 1 307 1 LDV LIG . I 7 HOH A 1 401 83 HOH HOH . I 7 HOH A 2 402 65 HOH HOH . I 7 HOH A 3 403 46 HOH HOH . I 7 HOH A 4 404 17 HOH HOH . I 7 HOH A 5 405 39 HOH HOH . I 7 HOH A 6 406 36 HOH HOH . I 7 HOH A 7 407 11 HOH HOH . I 7 HOH A 8 408 12 HOH HOH . I 7 HOH A 9 409 16 HOH HOH . I 7 HOH A 10 410 38 HOH HOH . I 7 HOH A 11 411 60 HOH HOH . I 7 HOH A 12 412 35 HOH HOH . I 7 HOH A 13 413 29 HOH HOH . I 7 HOH A 14 414 68 HOH HOH . I 7 HOH A 15 415 9 HOH HOH . I 7 HOH A 16 416 97 HOH HOH . I 7 HOH A 17 417 96 HOH HOH . I 7 HOH A 18 418 95 HOH HOH . I 7 HOH A 19 419 14 HOH HOH . I 7 HOH A 20 420 23 HOH HOH . I 7 HOH A 21 421 4 HOH HOH . I 7 HOH A 22 422 80 HOH HOH . I 7 HOH A 23 423 66 HOH HOH . I 7 HOH A 24 424 1 HOH HOH . I 7 HOH A 25 425 32 HOH HOH . I 7 HOH A 26 426 2 HOH HOH . I 7 HOH A 27 427 81 HOH HOH . I 7 HOH A 28 428 110 HOH HOH . I 7 HOH A 29 429 15 HOH HOH . I 7 HOH A 30 430 27 HOH HOH . I 7 HOH A 31 431 71 HOH HOH . I 7 HOH A 32 432 94 HOH HOH . I 7 HOH A 33 433 88 HOH HOH . I 7 HOH A 34 434 5 HOH HOH . I 7 HOH A 35 435 3 HOH HOH . I 7 HOH A 36 436 76 HOH HOH . I 7 HOH A 37 437 50 HOH HOH . I 7 HOH A 38 438 13 HOH HOH . I 7 HOH A 39 439 43 HOH HOH . I 7 HOH A 40 440 67 HOH HOH . I 7 HOH A 41 441 24 HOH HOH . I 7 HOH A 42 442 90 HOH HOH . I 7 HOH A 43 443 7 HOH HOH . I 7 HOH A 44 444 78 HOH HOH . I 7 HOH A 45 445 6 HOH HOH . I 7 HOH A 46 446 74 HOH HOH . I 7 HOH A 47 447 33 HOH HOH . I 7 HOH A 48 448 8 HOH HOH . I 7 HOH A 49 449 22 HOH HOH . I 7 HOH A 50 450 84 HOH HOH . I 7 HOH A 51 451 86 HOH HOH . I 7 HOH A 52 452 21 HOH HOH . I 7 HOH A 53 453 25 HOH HOH . I 7 HOH A 54 454 57 HOH HOH . I 7 HOH A 55 455 101 HOH HOH . I 7 HOH A 56 456 30 HOH HOH . I 7 HOH A 57 457 19 HOH HOH . I 7 HOH A 58 458 105 HOH HOH . I 7 HOH A 59 459 40 HOH HOH . I 7 HOH A 60 460 31 HOH HOH . I 7 HOH A 61 461 72 HOH HOH . I 7 HOH A 62 462 42 HOH HOH . I 7 HOH A 63 463 52 HOH HOH . I 7 HOH A 64 464 106 HOH HOH . I 7 HOH A 65 465 69 HOH HOH . I 7 HOH A 66 466 26 HOH HOH . I 7 HOH A 67 467 98 HOH HOH . I 7 HOH A 68 468 20 HOH HOH . I 7 HOH A 69 469 62 HOH HOH . I 7 HOH A 70 470 93 HOH HOH . I 7 HOH A 71 471 51 HOH HOH . I 7 HOH A 72 472 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDV . . . H 6 -54.279 19.053 85.437 0.74 54.85 ? N1 LDV 307 A 1 HETATM 2 C C4 LDV . . . H 6 -54.963 17.728 85.615 0.74 50.29 ? C4 LDV 307 A 1 HETATM 3 C C5 LDV . . . H 6 -53.84 19.137 84.006 0.74 57.02 ? C5 LDV 307 A 1 HETATM 4 C C6 LDV . . . H 6 -55.067 19.172 83.105 0.74 57.34 ? C6 LDV 307 A 1 HETATM 5 C C7 LDV . . . H 6 -53.158 19.273 86.435 0.74 52.37 ? C7 LDV 307 A 1 HETATM 6 C C8 LDV . . . H 6 -52.337 20.522 86.251 0.74 54.79 ? C8 LDV 307 A 1 HETATM 7 C C10 LDV . . . H 6 -50.755 22.162 86.549 0.74 60.17 ? C10 LDV 307 A 1 HETATM 8 C C13 LDV . . . H 6 -49.656 21.212 88.859 0.74 68.85 ? C13 LDV 307 A 1 HETATM 9 C C15 LDV . . . H 6 -49.705 22.876 87.118 0.74 64.32 ? C15 LDV 307 A 1 HETATM 10 C C1 LDV . . . H 6 -55.029 16.745 82.523 0.74 53.09 ? C1 LDV 307 A 1 HETATM 11 C C11 LDV . . . H 6 -51.267 20.971 87.103 0.74 60.94 ? C11 LDV 307 A 1 HETATM 12 C C12 LDV . . . H 6 -50.682 20.495 88.28 0.74 65.48 ? C12 LDV 307 A 1 HETATM 13 C C14 LDV . . . H 6 -49.161 22.376 88.276 0.74 68.26 ? C14 LDV 307 A 1 HETATM 14 C C2 LDV . . . H 6 -55.817 17.865 83.192 0.74 51.99 ? C2 LDV 307 A 1 HETATM 15 C C3 LDV . . . H 6 -56.148 17.58 84.655 0.74 53.44 ? C3 LDV 307 A 1 HETATM 16 C C9 LDV . . . H 6 -52.425 21.45 85.259 0.74 55.17 ? C9 LDV 307 A 1 HETATM 17 N N2 LDV . . . H 6 -51.481 22.421 85.427 0.74 62.96 ? N2 LDV 307 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #