data_5QOO # _model_server_result.job_id sIp7VQH2rhHsm6kIEIEKAw _model_server_result.datetime_utc '2024-10-19 23:37:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qoo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5QOO # _exptl.entry_id 5QOO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.31 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-N-{5-[(2S)-oxolan-2-yl]-1,3,4-thiadiazol-2(3H)-ylidene}propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QOO _cell.length_a 48.73 _cell.length_b 61.32 _cell.length_c 65.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N3 O2 S' _chem_comp.formula_weight 241.31 _chem_comp.id LDJ _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-N-{5-[(2S)-oxolan-2-yl]-1,3,4-thiadiazol-2(3H)-ylidene}propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 LDJ sing 197 n n C9 C10 LDJ sing 198 n n C8 C7 LDJ sing 199 n n C10 O2 LDJ sing 200 n n C7 O2 LDJ sing 201 n n C7 C6 LDJ sing 202 n n S1 C6 LDJ sing 203 n n S1 C5 LDJ sing 204 n n C6 N3 LDJ doub 205 n n O1 C4 LDJ doub 206 n n N3 N2 LDJ sing 207 n n C5 N2 LDJ sing 208 n n C5 N1 LDJ doub 209 n n C4 N1 LDJ sing 210 n n C4 C2 LDJ sing 211 n n C3 C2 LDJ sing 212 n n C2 C1 LDJ sing 213 n n C7 H3 LDJ sing 214 n n C8 H4 LDJ sing 215 n n C8 H5 LDJ sing 216 n n C10 H6 LDJ sing 217 n n C10 H7 LDJ sing 218 n n C1 H8 LDJ sing 219 n n C1 H9 LDJ sing 220 n n C1 H10 LDJ sing 221 n n C2 H11 LDJ sing 222 n n C3 H12 LDJ sing 223 n n C3 H13 LDJ sing 224 n n C3 H14 LDJ sing 225 n n C9 H15 LDJ sing 226 n n C9 H16 LDJ sing 227 n n N2 H17 LDJ sing 228 n n # _atom_sites.entry_id 5QOO _atom_sites.fract_transf_matrix[1][1] 0.020521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 2 EDO EDO . C 3 DMS A 1 302 1 DMS DMS . D 4 ACT A 1 303 1 ACT ACT . E 5 PEG A 1 304 1 PEG PEG . F 6 LDJ A 1 305 1 LDJ LIG . G 7 HOH A 1 401 83 HOH HOH . G 7 HOH A 2 402 68 HOH HOH . G 7 HOH A 3 403 70 HOH HOH . G 7 HOH A 4 404 104 HOH HOH . G 7 HOH A 5 405 107 HOH HOH . G 7 HOH A 6 406 102 HOH HOH . G 7 HOH A 7 407 60 HOH HOH . G 7 HOH A 8 408 8 HOH HOH . G 7 HOH A 9 409 39 HOH HOH . G 7 HOH A 10 410 88 HOH HOH . G 7 HOH A 11 411 76 HOH HOH . G 7 HOH A 12 412 16 HOH HOH . G 7 HOH A 13 413 96 HOH HOH . G 7 HOH A 14 414 97 HOH HOH . G 7 HOH A 15 415 12 HOH HOH . G 7 HOH A 16 416 17 HOH HOH . G 7 HOH A 17 417 66 HOH HOH . G 7 HOH A 18 418 38 HOH HOH . G 7 HOH A 19 419 95 HOH HOH . G 7 HOH A 20 420 23 HOH HOH . G 7 HOH A 21 421 18 HOH HOH . G 7 HOH A 22 422 13 HOH HOH . G 7 HOH A 23 423 1 HOH HOH . G 7 HOH A 24 424 55 HOH HOH . G 7 HOH A 25 425 100 HOH HOH . G 7 HOH A 26 426 9 HOH HOH . G 7 HOH A 27 427 67 HOH HOH . G 7 HOH A 28 428 31 HOH HOH . G 7 HOH A 29 429 29 HOH HOH . G 7 HOH A 30 430 5 HOH HOH . G 7 HOH A 31 431 14 HOH HOH . G 7 HOH A 32 432 35 HOH HOH . G 7 HOH A 33 433 85 HOH HOH . G 7 HOH A 34 434 46 HOH HOH . G 7 HOH A 35 435 65 HOH HOH . G 7 HOH A 36 436 2 HOH HOH . G 7 HOH A 37 437 32 HOH HOH . G 7 HOH A 38 438 33 HOH HOH . G 7 HOH A 39 439 59 HOH HOH . G 7 HOH A 40 440 6 HOH HOH . G 7 HOH A 41 441 10 HOH HOH . G 7 HOH A 42 442 24 HOH HOH . G 7 HOH A 43 443 50 HOH HOH . G 7 HOH A 44 444 7 HOH HOH . G 7 HOH A 45 445 3 HOH HOH . G 7 HOH A 46 446 4 HOH HOH . G 7 HOH A 47 447 43 HOH HOH . G 7 HOH A 48 448 71 HOH HOH . G 7 HOH A 49 449 75 HOH HOH . G 7 HOH A 50 450 84 HOH HOH . G 7 HOH A 51 451 80 HOH HOH . G 7 HOH A 52 452 22 HOH HOH . G 7 HOH A 53 453 27 HOH HOH . G 7 HOH A 54 454 30 HOH HOH . G 7 HOH A 55 455 74 HOH HOH . G 7 HOH A 56 456 11 HOH HOH . G 7 HOH A 57 457 62 HOH HOH . G 7 HOH A 58 458 36 HOH HOH . G 7 HOH A 59 459 105 HOH HOH . G 7 HOH A 60 460 103 HOH HOH . G 7 HOH A 61 461 72 HOH HOH . G 7 HOH A 62 462 42 HOH HOH . G 7 HOH A 63 463 69 HOH HOH . G 7 HOH A 64 464 28 HOH HOH . G 7 HOH A 65 465 78 HOH HOH . G 7 HOH A 66 466 94 HOH HOH . G 7 HOH A 67 467 40 HOH HOH . G 7 HOH A 68 468 57 HOH HOH . G 7 HOH A 69 469 19 HOH HOH . G 7 HOH A 70 470 106 HOH HOH . G 7 HOH A 71 471 25 HOH HOH . G 7 HOH A 72 472 79 HOH HOH . G 7 HOH A 73 473 21 HOH HOH . G 7 HOH A 74 474 92 HOH HOH . G 7 HOH A 75 475 15 HOH HOH . G 7 HOH A 76 476 47 HOH HOH . G 7 HOH A 77 477 26 HOH HOH . G 7 HOH A 78 478 111 HOH HOH . G 7 HOH A 79 479 86 HOH HOH . G 7 HOH A 80 480 81 HOH HOH . G 7 HOH A 81 481 101 HOH HOH . G 7 HOH A 82 482 110 HOH HOH . G 7 HOH A 83 483 98 HOH HOH . G 7 HOH A 84 484 51 HOH HOH . G 7 HOH A 85 485 20 HOH HOH . G 7 HOH A 86 486 56 HOH HOH . G 7 HOH A 87 487 93 HOH HOH . G 7 HOH A 88 488 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDJ . . . F 6 -42.959 29.478 74.245 0.57 40.24 ? N1 LDJ 305 A 1 HETATM 2 N N3 LDJ . . . F 6 -39.692 28.827 73.127 0.57 45.45 ? N3 LDJ 305 A 1 HETATM 3 C C4 LDJ . . . F 6 -44.252 29.581 73.82 0.57 37.86 ? C4 LDJ 305 A 1 HETATM 4 C C5 LDJ . . . F 6 -41.857 29.167 73.485 0.57 41.29 ? C5 LDJ 305 A 1 HETATM 5 C C6 LDJ . . . F 6 -40.152 28.748 71.915 0.57 42.24 ? C6 LDJ 305 A 1 HETATM 6 C C7 LDJ . . . F 6 -39.271 28.808 70.713 0.57 45.87 ? C7 LDJ 305 A 1 HETATM 7 C C8 LDJ . . . F 6 -39.933 28.232 69.473 0.57 44.38 ? C8 LDJ 305 A 1 HETATM 8 C C10 LDJ . . . F 6 -37.953 27.111 69.832 0.57 46.78 ? C10 LDJ 305 A 1 HETATM 9 C C1 LDJ . . . F 6 -46.298 28.963 74.998 0.57 32.96 ? C1 LDJ 305 A 1 HETATM 10 C C2 LDJ . . . F 6 -45.243 30.038 74.868 0.57 35.11 ? C2 LDJ 305 A 1 HETATM 11 C C3 LDJ . . . F 6 -45.835 31.366 74.43 0.57 37.97 ? C3 LDJ 305 A 1 HETATM 12 C C9 LDJ . . . F 6 -39.336 26.836 69.411 0.57 44.35 ? C9 LDJ 305 A 1 HETATM 13 N N2 LDJ . . . F 6 -40.664 29.246 74.011 0.57 41.47 ? N2 LDJ 305 A 1 HETATM 14 O O1 LDJ . . . F 6 -44.614 29.347 72.677 0.57 34.18 ? O1 LDJ 305 A 1 HETATM 15 O O2 LDJ . . . F 6 -38.077 28.038 70.909 0.57 47.73 ? O2 LDJ 305 A 1 HETATM 16 S S1 LDJ . . . F 6 -41.894 28.67 71.831 0.57 39.08 ? S1 LDJ 305 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #