data_5QOQ # _model_server_result.job_id 3Zo0WKidM-t1tISMC9EW8w _model_server_result.datetime_utc '2024-10-19 19:18:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qoq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5QOQ # _exptl.entry_id 5QOQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 249.241 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-ethyl-N-[(4-fluorophenyl)methyl]-1,2,4-oxadiazole-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QOQ _cell.length_a 48.388 _cell.length_b 60.478 _cell.length_c 65.62 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QOQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H12 F N3 O2' _chem_comp.formula_weight 249.241 _chem_comp.id LD7 _chem_comp.mon_nstd_flag . _chem_comp.name 3-ethyl-N-[(4-fluorophenyl)methyl]-1,2,4-oxadiazole-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 LD7 sing 197 n n C2 C3 LD7 sing 198 n n C3 N1 LD7 doub 199 n y C3 N2 LD7 sing 200 n y N1 O1 LD7 sing 201 n y N2 C4 LD7 doub 202 n y O1 C4 LD7 sing 203 n y C4 C5 LD7 sing 204 n n C5 O2 LD7 doub 205 n n C5 N3 LD7 sing 206 n n N3 C6 LD7 sing 207 n n C6 C7 LD7 sing 208 n n C7 C12 LD7 doub 209 n y C7 C8 LD7 sing 210 n y C12 C11 LD7 sing 211 n y C8 C9 LD7 doub 212 n y C11 C10 LD7 doub 213 n y C9 C10 LD7 sing 214 n y C10 F1 LD7 sing 215 n n N3 H1 LD7 sing 216 n n C6 H2 LD7 sing 217 n n C6 H3 LD7 sing 218 n n C8 H4 LD7 sing 219 n n C1 H5 LD7 sing 220 n n C1 H6 LD7 sing 221 n n C1 H7 LD7 sing 222 n n C11 H8 LD7 sing 223 n n C12 H9 LD7 sing 224 n n C2 H10 LD7 sing 225 n n C2 H11 LD7 sing 226 n n C9 H12 LD7 sing 227 n n # _atom_sites.entry_id 5QOQ _atom_sites.fract_transf_matrix[1][1] 0.020666 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 2 EDO EDO . C 2 EDO A 1 302 3 EDO EDO . D 3 DMS A 1 303 1 DMS DMS . E 4 ACT A 1 304 1 ACT ACT . F 4 ACT A 1 305 2 ACT ACT . G 5 LD7 A 1 306 1 LD7 LIG . H 6 HOH A 1 401 8 HOH HOH . H 6 HOH A 2 402 104 HOH HOH . H 6 HOH A 3 403 12 HOH HOH . H 6 HOH A 4 404 11 HOH HOH . H 6 HOH A 5 405 70 HOH HOH . H 6 HOH A 6 406 66 HOH HOH . H 6 HOH A 7 407 67 HOH HOH . H 6 HOH A 8 408 90 HOH HOH . H 6 HOH A 9 409 78 HOH HOH . H 6 HOH A 10 410 23 HOH HOH . H 6 HOH A 11 411 36 HOH HOH . H 6 HOH A 12 412 17 HOH HOH . H 6 HOH A 13 413 60 HOH HOH . H 6 HOH A 14 414 18 HOH HOH . H 6 HOH A 15 415 68 HOH HOH . H 6 HOH A 16 416 13 HOH HOH . H 6 HOH A 17 417 106 HOH HOH . H 6 HOH A 18 418 95 HOH HOH . H 6 HOH A 19 419 97 HOH HOH . H 6 HOH A 20 420 39 HOH HOH . H 6 HOH A 21 421 10 HOH HOH . H 6 HOH A 22 422 102 HOH HOH . H 6 HOH A 23 423 96 HOH HOH . H 6 HOH A 24 424 24 HOH HOH . H 6 HOH A 25 425 81 HOH HOH . H 6 HOH A 26 426 1 HOH HOH . H 6 HOH A 27 427 32 HOH HOH . H 6 HOH A 28 428 38 HOH HOH . H 6 HOH A 29 429 74 HOH HOH . H 6 HOH A 30 430 71 HOH HOH . H 6 HOH A 31 431 2 HOH HOH . H 6 HOH A 32 432 5 HOH HOH . H 6 HOH A 33 433 100 HOH HOH . H 6 HOH A 34 434 46 HOH HOH . H 6 HOH A 35 435 50 HOH HOH . H 6 HOH A 36 436 76 HOH HOH . H 6 HOH A 37 437 35 HOH HOH . H 6 HOH A 38 438 29 HOH HOH . H 6 HOH A 39 439 4 HOH HOH . H 6 HOH A 40 440 31 HOH HOH . H 6 HOH A 41 441 6 HOH HOH . H 6 HOH A 42 442 16 HOH HOH . H 6 HOH A 43 443 79 HOH HOH . H 6 HOH A 44 444 65 HOH HOH . H 6 HOH A 45 445 101 HOH HOH . H 6 HOH A 46 446 47 HOH HOH . H 6 HOH A 47 447 14 HOH HOH . H 6 HOH A 48 448 3 HOH HOH . H 6 HOH A 49 449 33 HOH HOH . H 6 HOH A 50 450 88 HOH HOH . H 6 HOH A 51 451 7 HOH HOH . H 6 HOH A 52 452 43 HOH HOH . H 6 HOH A 53 453 27 HOH HOH . H 6 HOH A 54 454 9 HOH HOH . H 6 HOH A 55 455 62 HOH HOH . H 6 HOH A 56 456 59 HOH HOH . H 6 HOH A 57 457 30 HOH HOH . H 6 HOH A 58 458 57 HOH HOH . H 6 HOH A 59 459 55 HOH HOH . H 6 HOH A 60 460 22 HOH HOH . H 6 HOH A 61 461 42 HOH HOH . H 6 HOH A 62 462 85 HOH HOH . H 6 HOH A 63 463 15 HOH HOH . H 6 HOH A 64 464 72 HOH HOH . H 6 HOH A 65 465 75 HOH HOH . H 6 HOH A 66 466 103 HOH HOH . H 6 HOH A 67 467 105 HOH HOH . H 6 HOH A 68 468 69 HOH HOH . H 6 HOH A 69 469 92 HOH HOH . H 6 HOH A 70 470 94 HOH HOH . H 6 HOH A 71 471 28 HOH HOH . H 6 HOH A 72 472 21 HOH HOH . H 6 HOH A 73 473 84 HOH HOH . H 6 HOH A 74 474 25 HOH HOH . H 6 HOH A 75 475 19 HOH HOH . H 6 HOH A 76 476 40 HOH HOH . H 6 HOH A 77 477 52 HOH HOH . H 6 HOH A 78 478 107 HOH HOH . H 6 HOH A 79 479 86 HOH HOH . H 6 HOH A 80 480 26 HOH HOH . H 6 HOH A 81 481 51 HOH HOH . H 6 HOH A 82 482 98 HOH HOH . H 6 HOH A 83 483 20 HOH HOH . H 6 HOH A 84 484 56 HOH HOH . H 6 HOH A 85 485 41 HOH HOH . H 6 HOH A 86 486 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LD7 . . . G 5 -38.935 24.85 75.722 0.37 39.31 ? N1 LD7 306 A 1 HETATM 2 N N3 LD7 . . . G 5 -40.46 21.884 78.273 0.37 39.3 ? N3 LD7 306 A 1 HETATM 3 C C4 LD7 . . . G 5 -38.81 23.048 76.968 0.37 39.09 ? C4 LD7 306 A 1 HETATM 4 C C5 LD7 . . . G 5 -39.182 21.953 77.879 0.37 39.47 ? C5 LD7 306 A 1 HETATM 5 C C6 LD7 . . . G 5 -41.016 20.676 78.875 0.37 39.55 ? C6 LD7 306 A 1 HETATM 6 C C7 LD7 . . . G 5 -40.617 20.478 80.318 0.37 38.81 ? C7 LD7 306 A 1 HETATM 7 C C8 LD7 . . . G 5 -40.785 21.492 81.245 0.37 37.51 ? C8 LD7 306 A 1 HETATM 8 C C10 LD7 . . . G 5 -39.92 20.116 82.958 0.37 36.97 ? C10 LD7 306 A 1 HETATM 9 C C1 LD7 . . . G 5 -35.223 24.491 75.445 0.37 38.23 ? C1 LD7 306 A 1 HETATM 10 C C11 LD7 . . . G 5 -39.737 19.081 82.085 0.37 38.56 ? C11 LD7 306 A 1 HETATM 11 C C12 LD7 . . . G 5 -40.094 19.27 80.757 0.37 39.22 ? C12 LD7 306 A 1 HETATM 12 C C2 LD7 . . . G 5 -36.579 24.963 74.931 0.37 38.32 ? C2 LD7 306 A 1 HETATM 13 C C3 LD7 . . . G 5 -37.721 24.396 75.692 0.37 38.54 ? C3 LD7 306 A 1 HETATM 14 C C9 LD7 . . . G 5 -40.434 21.322 82.577 0.37 37.41 ? C9 LD7 306 A 1 HETATM 15 F F1 LD7 . . . G 5 -39.566 19.942 84.262 0.37 33.98 ? F1 LD7 306 A 1 HETATM 16 N N2 LD7 . . . G 5 -37.617 23.293 76.47 0.37 37.94 ? N2 LD7 306 A 1 HETATM 17 O O1 LD7 . . . G 5 -39.688 23.989 76.555 0.37 38.68 ? O1 LD7 306 A 1 HETATM 18 O O2 LD7 . . . G 5 -38.333 21.131 78.231 0.37 41.32 ? O2 LD7 306 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 18 #