data_5QOV # _model_server_result.job_id TmcCSxlUihwbtsBSPCyh2w _model_server_result.datetime_utc '2024-11-01 09:27:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qov # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5QOV # _exptl.entry_id 5QOV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QOV _cell.length_a 48.28 _cell.length_b 60.35 _cell.length_c 65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QOV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 89 n n S C1 DMS sing 90 n n S C2 DMS sing 91 n n C1 H11 DMS sing 92 n n C1 H12 DMS sing 93 n n C1 H13 DMS sing 94 n n C2 H21 DMS sing 95 n n C2 H22 DMS sing 96 n n C2 H23 DMS sing 97 n n # _atom_sites.entry_id 5QOV _atom_sites.fract_transf_matrix[1][1] 0.020713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01657 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 2 EDO EDO . C 2 EDO A 1 302 3 EDO EDO . D 3 DMS A 1 303 1 DMS DMS . E 4 ACT A 1 304 1 ACT ACT . F 4 ACT A 1 305 2 ACT ACT . G 5 LE4 A 1 306 1 LE4 LIG . H 6 HOH A 1 401 83 HOH HOH . H 6 HOH A 2 402 104 HOH HOH . H 6 HOH A 3 403 70 HOH HOH . H 6 HOH A 4 404 60 HOH HOH . H 6 HOH A 5 405 102 HOH HOH . H 6 HOH A 6 406 66 HOH HOH . H 6 HOH A 7 407 15 HOH HOH . H 6 HOH A 8 408 19 HOH HOH . H 6 HOH A 9 409 67 HOH HOH . H 6 HOH A 10 410 23 HOH HOH . H 6 HOH A 11 411 39 HOH HOH . H 6 HOH A 12 412 90 HOH HOH . H 6 HOH A 13 413 78 HOH HOH . H 6 HOH A 14 414 10 HOH HOH . H 6 HOH A 15 415 8 HOH HOH . H 6 HOH A 16 416 88 HOH HOH . H 6 HOH A 17 417 96 HOH HOH . H 6 HOH A 18 418 97 HOH HOH . H 6 HOH A 19 419 24 HOH HOH . H 6 HOH A 20 420 71 HOH HOH . H 6 HOH A 21 421 38 HOH HOH . H 6 HOH A 22 422 18 HOH HOH . H 6 HOH A 23 423 17 HOH HOH . H 6 HOH A 24 424 13 HOH HOH . H 6 HOH A 25 425 95 HOH HOH . H 6 HOH A 26 426 85 HOH HOH . H 6 HOH A 27 427 31 HOH HOH . H 6 HOH A 28 428 16 HOH HOH . H 6 HOH A 29 429 101 HOH HOH . H 6 HOH A 30 430 80 HOH HOH . H 6 HOH A 31 431 100 HOH HOH . H 6 HOH A 32 432 46 HOH HOH . H 6 HOH A 33 433 5 HOH HOH . H 6 HOH A 34 434 68 HOH HOH . H 6 HOH A 35 435 2 HOH HOH . H 6 HOH A 36 436 14 HOH HOH . H 6 HOH A 37 437 29 HOH HOH . H 6 HOH A 38 438 4 HOH HOH . H 6 HOH A 39 439 6 HOH HOH . H 6 HOH A 40 440 9 HOH HOH . H 6 HOH A 41 441 1 HOH HOH . H 6 HOH A 42 442 35 HOH HOH . H 6 HOH A 43 443 106 HOH HOH . H 6 HOH A 44 444 3 HOH HOH . H 6 HOH A 45 445 62 HOH HOH . H 6 HOH A 46 446 65 HOH HOH . H 6 HOH A 47 447 79 HOH HOH . H 6 HOH A 48 448 47 HOH HOH . H 6 HOH A 49 449 103 HOH HOH . H 6 HOH A 50 450 33 HOH HOH . H 6 HOH A 51 451 43 HOH HOH . H 6 HOH A 52 452 27 HOH HOH . H 6 HOH A 53 453 28 HOH HOH . H 6 HOH A 54 454 7 HOH HOH . H 6 HOH A 55 455 59 HOH HOH . H 6 HOH A 56 456 55 HOH HOH . H 6 HOH A 57 457 57 HOH HOH . H 6 HOH A 58 458 30 HOH HOH . H 6 HOH A 59 459 11 HOH HOH . H 6 HOH A 60 460 84 HOH HOH . H 6 HOH A 61 461 50 HOH HOH . H 6 HOH A 62 462 105 HOH HOH . H 6 HOH A 63 463 42 HOH HOH . H 6 HOH A 64 464 94 HOH HOH . H 6 HOH A 65 465 69 HOH HOH . H 6 HOH A 66 466 72 HOH HOH . H 6 HOH A 67 467 40 HOH HOH . H 6 HOH A 68 468 21 HOH HOH . H 6 HOH A 69 469 25 HOH HOH . H 6 HOH A 70 470 75 HOH HOH . H 6 HOH A 71 471 36 HOH HOH . H 6 HOH A 72 472 92 HOH HOH . H 6 HOH A 73 473 52 HOH HOH . H 6 HOH A 74 474 74 HOH HOH . H 6 HOH A 75 475 81 HOH HOH . H 6 HOH A 76 476 26 HOH HOH . H 6 HOH A 77 477 86 HOH HOH . H 6 HOH A 78 478 51 HOH HOH . H 6 HOH A 79 479 20 HOH HOH . H 6 HOH A 80 480 98 HOH HOH . H 6 HOH A 81 481 107 HOH HOH . H 6 HOH A 82 482 56 HOH HOH . H 6 HOH A 83 483 93 HOH HOH . H 6 HOH A 84 484 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -57.998 15.91 74.223 1 63.73 ? S DMS 303 A 1 HETATM 2 O O DMS . . . D 3 -56.953 16.326 73.293 1 45.58 ? O DMS 303 A 1 HETATM 3 C C1 DMS . . . D 3 -58.685 17.359 74.811 1 57.85 ? C1 DMS 303 A 1 HETATM 4 C C2 DMS . . . D 3 -59.242 15.22 73.262 1 61.19 ? C2 DMS 303 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #