data_5QOY # _model_server_result.job_id UvbjPVLXb5MyFUEyJcQWPg _model_server_result.datetime_utc '2024-11-24 10:41:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qoy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5QOY # _exptl.entry_id 5QOY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QOY _cell.length_a 48.226 _cell.length_b 60.434 _cell.length_c 65.249 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QOY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 89 n n S C1 DMS sing 90 n n S C2 DMS sing 91 n n C1 H11 DMS sing 92 n n C1 H12 DMS sing 93 n n C1 H13 DMS sing 94 n n C2 H21 DMS sing 95 n n C2 H22 DMS sing 96 n n C2 H23 DMS sing 97 n n # _atom_sites.entry_id 5QOY _atom_sites.fract_transf_matrix[1][1] 0.020736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 2 EDO EDO . C 2 EDO A 1 302 3 EDO EDO . D 3 DMS A 1 303 1 DMS DMS . E 4 ACT A 1 304 1 ACT ACT . F 4 ACT A 1 305 2 ACT ACT . G 5 LFJ A 1 306 1 LFJ LIG . H 6 HOH A 1 401 83 HOH HOH . H 6 HOH A 2 402 104 HOH HOH . H 6 HOH A 3 403 12 HOH HOH . H 6 HOH A 4 404 70 HOH HOH . H 6 HOH A 5 405 36 HOH HOH . H 6 HOH A 6 406 60 HOH HOH . H 6 HOH A 7 407 23 HOH HOH . H 6 HOH A 8 408 67 HOH HOH . H 6 HOH A 9 409 100 HOH HOH . H 6 HOH A 10 410 96 HOH HOH . H 6 HOH A 11 411 90 HOH HOH . H 6 HOH A 12 412 8 HOH HOH . H 6 HOH A 13 413 66 HOH HOH . H 6 HOH A 14 414 88 HOH HOH . H 6 HOH A 15 415 17 HOH HOH . H 6 HOH A 16 416 76 HOH HOH . H 6 HOH A 17 417 15 HOH HOH . H 6 HOH A 18 418 38 HOH HOH . H 6 HOH A 19 419 102 HOH HOH . H 6 HOH A 20 420 13 HOH HOH . H 6 HOH A 21 421 16 HOH HOH . H 6 HOH A 22 422 10 HOH HOH . H 6 HOH A 23 423 39 HOH HOH . H 6 HOH A 24 424 68 HOH HOH . H 6 HOH A 25 425 19 HOH HOH . H 6 HOH A 26 426 1 HOH HOH . H 6 HOH A 27 427 95 HOH HOH . H 6 HOH A 28 428 32 HOH HOH . H 6 HOH A 29 429 78 HOH HOH . H 6 HOH A 30 430 9 HOH HOH . H 6 HOH A 31 431 97 HOH HOH . H 6 HOH A 32 432 71 HOH HOH . H 6 HOH A 33 433 46 HOH HOH . H 6 HOH A 34 434 14 HOH HOH . H 6 HOH A 35 435 5 HOH HOH . H 6 HOH A 36 436 4 HOH HOH . H 6 HOH A 37 437 35 HOH HOH . H 6 HOH A 38 438 103 HOH HOH . H 6 HOH A 39 439 11 HOH HOH . H 6 HOH A 40 440 3 HOH HOH . H 6 HOH A 41 441 59 HOH HOH . H 6 HOH A 42 442 2 HOH HOH . H 6 HOH A 43 443 31 HOH HOH . H 6 HOH A 44 444 18 HOH HOH . H 6 HOH A 45 445 85 HOH HOH . H 6 HOH A 46 446 24 HOH HOH . H 6 HOH A 47 447 57 HOH HOH . H 6 HOH A 48 448 75 HOH HOH . H 6 HOH A 49 449 43 HOH HOH . H 6 HOH A 50 450 94 HOH HOH . H 6 HOH A 51 451 55 HOH HOH . H 6 HOH A 52 452 101 HOH HOH . H 6 HOH A 53 453 6 HOH HOH . H 6 HOH A 54 454 29 HOH HOH . H 6 HOH A 55 455 65 HOH HOH . H 6 HOH A 56 456 7 HOH HOH . H 6 HOH A 57 457 79 HOH HOH . H 6 HOH A 58 458 30 HOH HOH . H 6 HOH A 59 459 50 HOH HOH . H 6 HOH A 60 460 33 HOH HOH . H 6 HOH A 61 461 80 HOH HOH . H 6 HOH A 62 462 27 HOH HOH . H 6 HOH A 63 463 42 HOH HOH . H 6 HOH A 64 464 84 HOH HOH . H 6 HOH A 65 465 69 HOH HOH . H 6 HOH A 66 466 87 HOH HOH . H 6 HOH A 67 467 28 HOH HOH . H 6 HOH A 68 468 21 HOH HOH . H 6 HOH A 69 469 22 HOH HOH . H 6 HOH A 70 470 62 HOH HOH . H 6 HOH A 71 471 105 HOH HOH . H 6 HOH A 72 472 72 HOH HOH . H 6 HOH A 73 473 106 HOH HOH . H 6 HOH A 74 474 47 HOH HOH . H 6 HOH A 75 475 25 HOH HOH . H 6 HOH A 76 476 40 HOH HOH . H 6 HOH A 77 477 92 HOH HOH . H 6 HOH A 78 478 52 HOH HOH . H 6 HOH A 79 479 74 HOH HOH . H 6 HOH A 80 480 26 HOH HOH . H 6 HOH A 81 481 81 HOH HOH . H 6 HOH A 82 482 86 HOH HOH . H 6 HOH A 83 483 98 HOH HOH . H 6 HOH A 84 484 51 HOH HOH . H 6 HOH A 85 485 20 HOH HOH . H 6 HOH A 86 486 56 HOH HOH . H 6 HOH A 87 487 93 HOH HOH . H 6 HOH A 88 488 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 -57.901 15.881 74.396 1 64.01 ? S DMS 303 A 1 HETATM 2 O O DMS . . . D 3 -56.812 16.34 73.52 1 47.59 ? O DMS 303 A 1 HETATM 3 C C1 DMS . . . D 3 -58.61 17.261 75.122 1 53.99 ? C1 DMS 303 A 1 HETATM 4 C C2 DMS . . . D 3 -59.121 15.229 73.379 1 55.67 ? C2 DMS 303 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #