data_5QP4 # _model_server_result.job_id 9_MR1c1N1NVuB7qmIx-vaQ _model_server_result.datetime_utc '2025-01-05 19:58:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5QP4 # _exptl.entry_id 5QP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.396 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3S)-1,1-dioxo-1lambda~6~-thiolan-3-yl]-N-[(4-fluorophenyl)methyl]-5-methyl-1H-pyrazole-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QP4 _cell.length_a 48.01 _cell.length_b 60.47 _cell.length_c 65.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H18 F N3 O3 S' _chem_comp.formula_weight 351.396 _chem_comp.id LH7 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3S)-1,1-dioxo-1lambda~6~-thiolan-3-yl]-N-[(4-fluorophenyl)methyl]-5-methyl-1H-pyrazole-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 S1 LH7 doub 218 n n S1 O2 LH7 doub 219 n n S1 C7 LH7 sing 220 n n S1 C8 LH7 sing 221 n n C7 C6 LH7 sing 222 n n C8 C5 LH7 sing 223 n n C6 C5 LH7 sing 224 n n C5 N2 LH7 sing 225 n n N1 N2 LH7 sing 226 n y N1 C4 LH7 doub 227 n y N2 C2 LH7 sing 228 n y C4 C3 LH7 sing 229 n y C2 C1 LH7 sing 230 n n C2 C3 LH7 doub 231 n y C3 C9 LH7 sing 232 n n N3 C9 LH7 sing 233 n n N3 C10 LH7 sing 234 n n C9 O3 LH7 doub 235 n n C10 C11 LH7 sing 236 n n C11 C12 LH7 doub 237 n y C11 C16 LH7 sing 238 n y C12 C13 LH7 sing 239 n y C16 C15 LH7 doub 240 n y C13 C14 LH7 doub 241 n y C15 C14 LH7 sing 242 n y C14 F1 LH7 sing 243 n n N3 H1 LH7 sing 244 n n C4 H2 LH7 sing 245 n n C5 H3 LH7 sing 246 n n C6 H4 LH7 sing 247 n n C6 H5 LH7 sing 248 n n C7 H6 LH7 sing 249 n n C7 H7 LH7 sing 250 n n C8 H8 LH7 sing 251 n n C8 H9 LH7 sing 252 n n C10 H10 LH7 sing 253 n n C10 H11 LH7 sing 254 n n C13 H12 LH7 sing 255 n n C15 H13 LH7 sing 256 n n C1 H14 LH7 sing 257 n n C1 H15 LH7 sing 258 n n C1 H16 LH7 sing 259 n n C12 H17 LH7 sing 260 n n C16 H18 LH7 sing 261 n n # _atom_sites.entry_id 5QP4 _atom_sites.fract_transf_matrix[1][1] 0.020829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 2 EDO EDO . C 2 EDO A 1 302 3 EDO EDO . D 3 DMS A 1 303 1 DMS DMS . E 4 ACT A 1 304 1 ACT ACT . F 4 ACT A 1 305 2 ACT ACT . G 5 LH7 A 1 306 1 LH7 LIG . H 6 HOH A 1 401 8 HOH HOH . H 6 HOH A 2 402 12 HOH HOH . H 6 HOH A 3 403 83 HOH HOH . H 6 HOH A 4 404 66 HOH HOH . H 6 HOH A 5 405 19 HOH HOH . H 6 HOH A 6 406 60 HOH HOH . H 6 HOH A 7 407 67 HOH HOH . H 6 HOH A 8 408 70 HOH HOH . H 6 HOH A 9 409 96 HOH HOH . H 6 HOH A 10 410 17 HOH HOH . H 6 HOH A 11 411 68 HOH HOH . H 6 HOH A 12 412 95 HOH HOH . H 6 HOH A 13 413 90 HOH HOH . H 6 HOH A 14 414 39 HOH HOH . H 6 HOH A 15 415 38 HOH HOH . H 6 HOH A 16 416 23 HOH HOH . H 6 HOH A 17 417 32 HOH HOH . H 6 HOH A 18 418 78 HOH HOH . H 6 HOH A 19 419 10 HOH HOH . H 6 HOH A 20 420 107 HOH HOH . H 6 HOH A 21 421 13 HOH HOH . H 6 HOH A 22 422 88 HOH HOH . H 6 HOH A 23 423 35 HOH HOH . H 6 HOH A 24 424 16 HOH HOH . H 6 HOH A 25 425 18 HOH HOH . H 6 HOH A 26 426 102 HOH HOH . H 6 HOH A 27 427 1 HOH HOH . H 6 HOH A 28 428 76 HOH HOH . H 6 HOH A 29 429 14 HOH HOH . H 6 HOH A 30 430 71 HOH HOH . H 6 HOH A 31 431 5 HOH HOH . H 6 HOH A 32 432 46 HOH HOH . H 6 HOH A 33 433 31 HOH HOH . H 6 HOH A 34 434 29 HOH HOH . H 6 HOH A 35 435 2 HOH HOH . H 6 HOH A 36 436 50 HOH HOH . H 6 HOH A 37 437 106 HOH HOH . H 6 HOH A 38 438 100 HOH HOH . H 6 HOH A 39 439 79 HOH HOH . H 6 HOH A 40 440 81 HOH HOH . H 6 HOH A 41 441 3 HOH HOH . H 6 HOH A 42 442 11 HOH HOH . H 6 HOH A 43 443 9 HOH HOH . H 6 HOH A 44 444 4 HOH HOH . H 6 HOH A 45 445 74 HOH HOH . H 6 HOH A 46 446 43 HOH HOH . H 6 HOH A 47 447 15 HOH HOH . H 6 HOH A 48 448 24 HOH HOH . H 6 HOH A 49 449 36 HOH HOH . H 6 HOH A 50 450 27 HOH HOH . H 6 HOH A 51 451 30 HOH HOH . H 6 HOH A 52 452 6 HOH HOH . H 6 HOH A 53 453 85 HOH HOH . H 6 HOH A 54 454 62 HOH HOH . H 6 HOH A 55 455 7 HOH HOH . H 6 HOH A 56 456 33 HOH HOH . H 6 HOH A 57 457 65 HOH HOH . H 6 HOH A 58 458 55 HOH HOH . H 6 HOH A 59 459 59 HOH HOH . H 6 HOH A 60 460 28 HOH HOH . H 6 HOH A 61 461 105 HOH HOH . H 6 HOH A 62 462 57 HOH HOH . H 6 HOH A 63 463 75 HOH HOH . H 6 HOH A 64 464 101 HOH HOH . H 6 HOH A 65 465 92 HOH HOH . H 6 HOH A 66 466 47 HOH HOH . H 6 HOH A 67 467 84 HOH HOH . H 6 HOH A 68 468 22 HOH HOH . H 6 HOH A 69 469 42 HOH HOH . H 6 HOH A 70 470 72 HOH HOH . H 6 HOH A 71 471 69 HOH HOH . H 6 HOH A 72 472 25 HOH HOH . H 6 HOH A 73 473 94 HOH HOH . H 6 HOH A 74 474 21 HOH HOH . H 6 HOH A 75 475 40 HOH HOH . H 6 HOH A 76 476 97 HOH HOH . H 6 HOH A 77 477 52 HOH HOH . H 6 HOH A 78 478 26 HOH HOH . H 6 HOH A 79 479 86 HOH HOH . H 6 HOH A 80 480 98 HOH HOH . H 6 HOH A 81 481 51 HOH HOH . H 6 HOH A 82 482 20 HOH HOH . H 6 HOH A 83 483 56 HOH HOH . H 6 HOH A 84 484 93 HOH HOH . H 6 HOH A 85 485 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LH7 . . . G 5 -38.124 23.533 76.423 0.41 79.15 ? N1 LH7 306 A 1 HETATM 2 N N3 LH7 . . . G 5 -39.52 19.979 77.975 0.41 66.92 ? N3 LH7 306 A 1 HETATM 3 C C4 LH7 . . . G 5 -38.74 22.55 77.047 0.41 77.91 ? C4 LH7 306 A 1 HETATM 4 C C5 LH7 . . . G 5 -35.836 24.175 75.857 0.41 81.2 ? C5 LH7 306 A 1 HETATM 5 C C6 LH7 . . . G 5 -34.602 23.613 75.135 0.41 80.87 ? C6 LH7 306 A 1 HETATM 6 C C7 LH7 . . . G 5 -33.907 24.812 74.546 0.41 82.05 ? C7 LH7 306 A 1 HETATM 7 C C8 LH7 . . . G 5 -36.521 24.967 74.732 0.41 82.15 ? C8 LH7 306 A 1 HETATM 8 C C10 LH7 . . . G 5 -40.621 20.175 78.913 0.41 64.4 ? C10 LH7 306 A 1 HETATM 9 C C13 LH7 . . . G 5 -39.269 18.907 82.222 0.41 59.01 ? C13 LH7 306 A 1 HETATM 10 C C15 LH7 . . . G 5 -40.021 21.161 82.537 0.41 56.05 ? C15 LH7 306 A 1 HETATM 11 C C1 LH7 . . . G 5 -35.268 21.393 77.405 0.41 76.54 ? C1 LH7 306 A 1 HETATM 12 C C11 LH7 . . . G 5 -40.213 20.119 80.364 0.41 59.89 ? C11 LH7 306 A 1 HETATM 13 C C12 LH7 . . . G 5 -39.661 18.965 80.894 0.41 58.47 ? C12 LH7 306 A 1 HETATM 14 C C14 LH7 . . . G 5 -39.473 20.004 83.01 0.41 56.61 ? C14 LH7 306 A 1 HETATM 15 C C16 LH7 . . . G 5 -40.395 21.207 81.202 0.41 57.81 ? C16 LH7 306 A 1 HETATM 16 C C2 LH7 . . . G 5 -36.597 22.02 77.163 0.41 77.23 ? C2 LH7 306 A 1 HETATM 17 C C3 LH7 . . . G 5 -37.865 21.579 77.531 0.41 76.29 ? C3 LH7 306 A 1 HETATM 18 C C9 LH7 . . . G 5 -38.265 20.364 78.235 0.41 70.32 ? C9 LH7 306 A 1 HETATM 19 F F1 LH7 . . . G 5 -39.102 19.944 84.32 0.41 50.92 ? F1 LH7 306 A 1 HETATM 20 N N2 LH7 . . . G 5 -36.786 23.229 76.476 0.41 78.31 ? N2 LH7 306 A 1 HETATM 21 O O1 LH7 . . . G 5 -35.318 25.54 72.459 0.41 86.2 ? O1 LH7 306 A 1 HETATM 22 O O2 LH7 . . . G 5 -35.1 27.139 74.304 0.41 82.84 ? O2 LH7 306 A 1 HETATM 23 O O3 LH7 . . . G 5 -37.518 19.784 79.032 0.41 65.57 ? O3 LH7 306 A 1 HETATM 24 S S1 LH7 . . . G 5 -35.209 25.775 73.871 0.41 86.83 ? S1 LH7 306 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #