data_5QP7 # _model_server_result.job_id 7F6XnQGxNV95aJdvKVblmA _model_server_result.datetime_utc '2024-12-03 18:00:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qp7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5QP7 # _exptl.entry_id 5QP7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.261 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-cycloheptyl-5-methyl-1,3,4-oxadiazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QP7 _cell.length_a 48.365 _cell.length_b 60.452 _cell.length_c 65.353 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QP7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N3 O' _chem_comp.formula_weight 195.261 _chem_comp.id LJJ _chem_comp.mon_nstd_flag . _chem_comp.name N-cycloheptyl-5-methyl-1,3,4-oxadiazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 N2 LJJ sing 218 n y N1 C2 LJJ doub 219 n y N2 C3 LJJ doub 220 n y C2 C1 LJJ sing 221 n n C2 O1 LJJ sing 222 n y C3 O1 LJJ sing 223 n y C3 N3 LJJ sing 224 n n N3 C4 LJJ sing 225 n n C5 C4 LJJ sing 226 n n C5 C6 LJJ sing 227 n n C4 C10 LJJ sing 228 n n C6 C7 LJJ sing 229 n n C10 C9 LJJ sing 230 n n C7 C8 LJJ sing 231 n n C8 C9 LJJ sing 232 n n N3 H1 LJJ sing 233 n n C4 H2 LJJ sing 234 n n C5 H3 LJJ sing 235 n n C5 H4 LJJ sing 236 n n C6 H5 LJJ sing 237 n n C6 H6 LJJ sing 238 n n C7 H7 LJJ sing 239 n n C7 H8 LJJ sing 240 n n C8 H9 LJJ sing 241 n n C8 H10 LJJ sing 242 n n C10 H11 LJJ sing 243 n n C10 H12 LJJ sing 244 n n C1 H13 LJJ sing 245 n n C1 H14 LJJ sing 246 n n C1 H15 LJJ sing 247 n n C9 H16 LJJ sing 248 n n C9 H17 LJJ sing 249 n n # _atom_sites.entry_id 5QP7 _atom_sites.fract_transf_matrix[1][1] 0.020676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015302 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 301 2 EDO EDO . C 2 EDO A 1 302 3 EDO EDO . D 3 DMS A 1 303 1 DMS DMS . E 4 ACT A 1 304 1 ACT ACT . F 4 ACT A 1 305 2 ACT ACT . G 5 LJJ A 1 306 1 LJJ LIG . H 6 HOH A 1 401 102 HOH HOH . H 6 HOH A 2 402 8 HOH HOH . H 6 HOH A 3 403 70 HOH HOH . H 6 HOH A 4 404 67 HOH HOH . H 6 HOH A 5 405 104 HOH HOH . H 6 HOH A 6 406 10 HOH HOH . H 6 HOH A 7 407 96 HOH HOH . H 6 HOH A 8 408 29 HOH HOH . H 6 HOH A 9 409 78 HOH HOH . H 6 HOH A 10 410 68 HOH HOH . H 6 HOH A 11 411 17 HOH HOH . H 6 HOH A 12 412 60 HOH HOH . H 6 HOH A 13 413 81 HOH HOH . H 6 HOH A 14 414 23 HOH HOH . H 6 HOH A 15 415 66 HOH HOH . H 6 HOH A 16 416 90 HOH HOH . H 6 HOH A 17 417 12 HOH HOH . H 6 HOH A 18 418 39 HOH HOH . H 6 HOH A 19 419 88 HOH HOH . H 6 HOH A 20 420 1 HOH HOH . H 6 HOH A 21 421 38 HOH HOH . H 6 HOH A 22 422 36 HOH HOH . H 6 HOH A 23 423 5 HOH HOH . H 6 HOH A 24 424 85 HOH HOH . H 6 HOH A 25 425 55 HOH HOH . H 6 HOH A 26 426 95 HOH HOH . H 6 HOH A 27 427 14 HOH HOH . H 6 HOH A 28 428 18 HOH HOH . H 6 HOH A 29 429 16 HOH HOH . H 6 HOH A 30 430 13 HOH HOH . H 6 HOH A 31 431 35 HOH HOH . H 6 HOH A 32 432 6 HOH HOH . H 6 HOH A 33 433 71 HOH HOH . H 6 HOH A 34 434 2 HOH HOH . H 6 HOH A 35 435 33 HOH HOH . H 6 HOH A 36 436 50 HOH HOH . H 6 HOH A 37 437 79 HOH HOH . H 6 HOH A 38 438 31 HOH HOH . H 6 HOH A 39 439 24 HOH HOH . H 6 HOH A 40 440 97 HOH HOH . H 6 HOH A 41 441 9 HOH HOH . H 6 HOH A 42 442 100 HOH HOH . H 6 HOH A 43 443 62 HOH HOH . H 6 HOH A 44 444 4 HOH HOH . H 6 HOH A 45 445 30 HOH HOH . H 6 HOH A 46 446 65 HOH HOH . H 6 HOH A 47 447 74 HOH HOH . H 6 HOH A 48 448 43 HOH HOH . H 6 HOH A 49 449 27 HOH HOH . H 6 HOH A 50 450 106 HOH HOH . H 6 HOH A 51 451 80 HOH HOH . H 6 HOH A 52 452 7 HOH HOH . H 6 HOH A 53 453 11 HOH HOH . H 6 HOH A 54 454 59 HOH HOH . H 6 HOH A 55 455 42 HOH HOH . H 6 HOH A 56 456 15 HOH HOH . H 6 HOH A 57 457 105 HOH HOH . H 6 HOH A 58 458 57 HOH HOH . H 6 HOH A 59 459 101 HOH HOH . H 6 HOH A 60 460 22 HOH HOH . H 6 HOH A 61 461 3 HOH HOH . H 6 HOH A 62 462 94 HOH HOH . H 6 HOH A 63 463 46 HOH HOH . H 6 HOH A 64 464 72 HOH HOH . H 6 HOH A 65 465 87 HOH HOH . H 6 HOH A 66 466 92 HOH HOH . H 6 HOH A 67 467 25 HOH HOH . H 6 HOH A 68 468 69 HOH HOH . H 6 HOH A 69 469 21 HOH HOH . H 6 HOH A 70 470 103 HOH HOH . H 6 HOH A 71 471 19 HOH HOH . H 6 HOH A 72 472 47 HOH HOH . H 6 HOH A 73 473 28 HOH HOH . H 6 HOH A 74 474 40 HOH HOH . H 6 HOH A 75 475 84 HOH HOH . H 6 HOH A 76 476 52 HOH HOH . H 6 HOH A 77 477 86 HOH HOH . H 6 HOH A 78 478 109 HOH HOH . H 6 HOH A 79 479 107 HOH HOH . H 6 HOH A 80 480 75 HOH HOH . H 6 HOH A 81 481 26 HOH HOH . H 6 HOH A 82 482 110 HOH HOH . H 6 HOH A 83 483 91 HOH HOH . H 6 HOH A 84 484 98 HOH HOH . H 6 HOH A 85 485 20 HOH HOH . H 6 HOH A 86 486 51 HOH HOH . H 6 HOH A 87 487 56 HOH HOH . H 6 HOH A 88 488 93 HOH HOH . H 6 HOH A 89 489 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LJJ . . . G 5 -36.817 18.965 76.341 0.52 56.89 ? N1 LJJ 306 A 1 HETATM 2 N N3 LJJ . . . G 5 -39.193 18.41 78.91 0.52 52.83 ? N3 LJJ 306 A 1 HETATM 3 C C4 LJJ . . . G 5 -39.763 19.367 79.866 0.52 54.44 ? C4 LJJ 306 A 1 HETATM 4 C C5 LJJ . . . G 5 -41.04 19.962 79.274 0.52 54.28 ? C5 LJJ 306 A 1 HETATM 5 C C6 LJJ . . . G 5 -41.567 21.185 79.991 0.52 51.87 ? C6 LJJ 306 A 1 HETATM 6 C C7 LJJ . . . G 5 -41.703 21.058 81.49 0.52 49.77 ? C7 LJJ 306 A 1 HETATM 7 C C8 LJJ . . . G 5 -40.398 20.994 82.237 0.52 50.74 ? C8 LJJ 306 A 1 HETATM 8 C C10 LJJ . . . G 5 -39.965 18.678 81.215 0.52 50.91 ? C10 LJJ 306 A 1 HETATM 9 C C1 LJJ . . . G 5 -35.134 20.516 77.348 0.52 52.88 ? C1 LJJ 306 A 1 HETATM 10 C C2 LJJ . . . G 5 -36.342 19.673 77.3 0.52 53.86 ? C2 LJJ 306 A 1 HETATM 11 C C3 LJJ . . . G 5 -38.154 18.758 78.034 0.52 55.22 ? C3 LJJ 306 A 1 HETATM 12 C C9 LJJ . . . G 5 -39.866 19.595 82.423 0.52 52.13 ? C9 LJJ 306 A 1 HETATM 13 N N2 LJJ . . . G 5 -37.998 18.365 76.804 0.52 55.81 ? N2 LJJ 306 A 1 HETATM 14 O O1 LJJ . . . G 5 -37.136 19.587 78.402 0.52 52.03 ? O1 LJJ 306 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #