data_5QPV # _model_server_result.job_id 6CVX-EZQXltqQgtmDiFclg _model_server_result.datetime_utc '2024-11-16 16:06:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qpv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5QPV # _exptl.entry_id 5QPV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QPV _cell.length_a 57.831 _cell.length_b 57.831 _cell.length_c 397.468 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QPV _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -28.9155 -50.083115 -66.244667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 104 A ASP 102 1_555 D ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc2 D ZN ZN . A ZN 403 1_555 G O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5QPV _atom_sites.fract_transf_matrix[1][1] 0.017292 _atom_sites.fract_transf_matrix[1][2] 0.009983 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 3 ZN A 1 403 1 ZN ZN . E 4 LWA A 1 404 1 LWA LIG . F 4 LWA A 1 405 2 LWA LIG . G 5 HOH A 1 501 74 HOH HOH . G 5 HOH A 2 502 313 HOH HOH . G 5 HOH A 3 503 166 HOH HOH . G 5 HOH A 4 504 213 HOH HOH . G 5 HOH A 5 505 169 HOH HOH . G 5 HOH A 6 506 72 HOH HOH . G 5 HOH A 7 507 278 HOH HOH . G 5 HOH A 8 508 220 HOH HOH . G 5 HOH A 9 509 303 HOH HOH . G 5 HOH A 10 510 218 HOH HOH . G 5 HOH A 11 511 211 HOH HOH . G 5 HOH A 12 512 1 HOH HOH . G 5 HOH A 13 513 310 HOH HOH . G 5 HOH A 14 514 309 HOH HOH . G 5 HOH A 15 515 99 HOH HOH . G 5 HOH A 16 516 187 HOH HOH . G 5 HOH A 17 517 301 HOH HOH . G 5 HOH A 18 518 209 HOH HOH . G 5 HOH A 19 519 326 HOH HOH . G 5 HOH A 20 520 311 HOH HOH . G 5 HOH A 21 521 237 HOH HOH . G 5 HOH A 22 522 269 HOH HOH . G 5 HOH A 23 523 150 HOH HOH . G 5 HOH A 24 524 145 HOH HOH . G 5 HOH A 25 525 266 HOH HOH . G 5 HOH A 26 526 272 HOH HOH . G 5 HOH A 27 527 118 HOH HOH . G 5 HOH A 28 528 122 HOH HOH . G 5 HOH A 29 529 13 HOH HOH . G 5 HOH A 30 530 73 HOH HOH . G 5 HOH A 31 531 160 HOH HOH . G 5 HOH A 32 532 247 HOH HOH . G 5 HOH A 33 533 325 HOH HOH . G 5 HOH A 34 534 125 HOH HOH . G 5 HOH A 35 535 216 HOH HOH . G 5 HOH A 36 536 113 HOH HOH . G 5 HOH A 37 537 22 HOH HOH . G 5 HOH A 38 538 296 HOH HOH . G 5 HOH A 39 539 285 HOH HOH . G 5 HOH A 40 540 3 HOH HOH . G 5 HOH A 41 541 57 HOH HOH . G 5 HOH A 42 542 183 HOH HOH . G 5 HOH A 43 543 44 HOH HOH . G 5 HOH A 44 544 56 HOH HOH . G 5 HOH A 45 545 34 HOH HOH . G 5 HOH A 46 546 208 HOH HOH . G 5 HOH A 47 547 185 HOH HOH . G 5 HOH A 48 548 312 HOH HOH . G 5 HOH A 49 549 161 HOH HOH . G 5 HOH A 50 550 246 HOH HOH . G 5 HOH A 51 551 100 HOH HOH . G 5 HOH A 52 552 292 HOH HOH . G 5 HOH A 53 553 66 HOH HOH . G 5 HOH A 54 554 291 HOH HOH . G 5 HOH A 55 555 276 HOH HOH . G 5 HOH A 56 556 135 HOH HOH . G 5 HOH A 57 557 128 HOH HOH . G 5 HOH A 58 558 324 HOH HOH . G 5 HOH A 59 559 60 HOH HOH . G 5 HOH A 60 560 259 HOH HOH . G 5 HOH A 61 561 152 HOH HOH . G 5 HOH A 62 562 317 HOH HOH . G 5 HOH A 63 563 14 HOH HOH . G 5 HOH A 64 564 46 HOH HOH . G 5 HOH A 65 565 12 HOH HOH . G 5 HOH A 66 566 82 HOH HOH . G 5 HOH A 67 567 232 HOH HOH . G 5 HOH A 68 568 331 HOH HOH . G 5 HOH A 69 569 64 HOH HOH . G 5 HOH A 70 570 271 HOH HOH . G 5 HOH A 71 571 235 HOH HOH . G 5 HOH A 72 572 35 HOH HOH . G 5 HOH A 73 573 308 HOH HOH . G 5 HOH A 74 574 23 HOH HOH . G 5 HOH A 75 575 91 HOH HOH . G 5 HOH A 76 576 70 HOH HOH . G 5 HOH A 77 577 68 HOH HOH . G 5 HOH A 78 578 10 HOH HOH . G 5 HOH A 79 579 6 HOH HOH . G 5 HOH A 80 580 165 HOH HOH . G 5 HOH A 81 581 55 HOH HOH . G 5 HOH A 82 582 153 HOH HOH . G 5 HOH A 83 583 89 HOH HOH . G 5 HOH A 84 584 127 HOH HOH . G 5 HOH A 85 585 130 HOH HOH . G 5 HOH A 86 586 286 HOH HOH . G 5 HOH A 87 587 61 HOH HOH . G 5 HOH A 88 588 53 HOH HOH . G 5 HOH A 89 589 327 HOH HOH . G 5 HOH A 90 590 129 HOH HOH . G 5 HOH A 91 591 288 HOH HOH . G 5 HOH A 92 592 202 HOH HOH . G 5 HOH A 93 593 36 HOH HOH . G 5 HOH A 94 594 323 HOH HOH . G 5 HOH A 95 595 170 HOH HOH . G 5 HOH A 96 596 176 HOH HOH . G 5 HOH A 97 597 109 HOH HOH . G 5 HOH A 98 598 17 HOH HOH . G 5 HOH A 99 599 96 HOH HOH . G 5 HOH A 100 600 33 HOH HOH . G 5 HOH A 101 601 79 HOH HOH . G 5 HOH A 102 602 126 HOH HOH . G 5 HOH A 103 603 77 HOH HOH . G 5 HOH A 104 604 29 HOH HOH . G 5 HOH A 105 605 47 HOH HOH . G 5 HOH A 106 606 167 HOH HOH . G 5 HOH A 107 607 171 HOH HOH . G 5 HOH A 108 608 239 HOH HOH . G 5 HOH A 109 609 39 HOH HOH . G 5 HOH A 110 610 8 HOH HOH . G 5 HOH A 111 611 26 HOH HOH . G 5 HOH A 112 612 31 HOH HOH . G 5 HOH A 113 613 189 HOH HOH . G 5 HOH A 114 614 298 HOH HOH . G 5 HOH A 115 615 210 HOH HOH . G 5 HOH A 116 616 274 HOH HOH . G 5 HOH A 117 617 81 HOH HOH . G 5 HOH A 118 618 88 HOH HOH . G 5 HOH A 119 619 19 HOH HOH . G 5 HOH A 120 620 252 HOH HOH . G 5 HOH A 121 621 2 HOH HOH . G 5 HOH A 122 622 182 HOH HOH . G 5 HOH A 123 623 50 HOH HOH . G 5 HOH A 124 624 24 HOH HOH . G 5 HOH A 125 625 177 HOH HOH . G 5 HOH A 126 626 9 HOH HOH . G 5 HOH A 127 627 28 HOH HOH . G 5 HOH A 128 628 7 HOH HOH . G 5 HOH A 129 629 117 HOH HOH . G 5 HOH A 130 630 38 HOH HOH . G 5 HOH A 131 631 78 HOH HOH . G 5 HOH A 132 632 42 HOH HOH . G 5 HOH A 133 633 137 HOH HOH . G 5 HOH A 134 634 114 HOH HOH . G 5 HOH A 135 635 93 HOH HOH . G 5 HOH A 136 636 51 HOH HOH . G 5 HOH A 137 637 58 HOH HOH . G 5 HOH A 138 638 238 HOH HOH . G 5 HOH A 139 639 41 HOH HOH . G 5 HOH A 140 640 134 HOH HOH . G 5 HOH A 141 641 110 HOH HOH . G 5 HOH A 142 642 277 HOH HOH . G 5 HOH A 143 643 32 HOH HOH . G 5 HOH A 144 644 4 HOH HOH . G 5 HOH A 145 645 43 HOH HOH . G 5 HOH A 146 646 164 HOH HOH . G 5 HOH A 147 647 203 HOH HOH . G 5 HOH A 148 648 154 HOH HOH . G 5 HOH A 149 649 54 HOH HOH . G 5 HOH A 150 650 328 HOH HOH . G 5 HOH A 151 651 175 HOH HOH . G 5 HOH A 152 652 112 HOH HOH . G 5 HOH A 153 653 307 HOH HOH . G 5 HOH A 154 654 248 HOH HOH . G 5 HOH A 155 655 11 HOH HOH . G 5 HOH A 156 656 75 HOH HOH . G 5 HOH A 157 657 302 HOH HOH . G 5 HOH A 158 658 45 HOH HOH . G 5 HOH A 159 659 69 HOH HOH . G 5 HOH A 160 660 94 HOH HOH . G 5 HOH A 161 661 65 HOH HOH . G 5 HOH A 162 662 52 HOH HOH . G 5 HOH A 163 663 105 HOH HOH . G 5 HOH A 164 664 21 HOH HOH . G 5 HOH A 165 665 115 HOH HOH . G 5 HOH A 166 666 149 HOH HOH . G 5 HOH A 167 667 15 HOH HOH . G 5 HOH A 168 668 186 HOH HOH . G 5 HOH A 169 669 315 HOH HOH . G 5 HOH A 170 670 131 HOH HOH . G 5 HOH A 171 671 85 HOH HOH . G 5 HOH A 172 672 120 HOH HOH . G 5 HOH A 173 673 80 HOH HOH . G 5 HOH A 174 674 138 HOH HOH . G 5 HOH A 175 675 25 HOH HOH . G 5 HOH A 176 676 139 HOH HOH . G 5 HOH A 177 677 27 HOH HOH . G 5 HOH A 178 678 124 HOH HOH . G 5 HOH A 179 679 256 HOH HOH . G 5 HOH A 180 680 111 HOH HOH . G 5 HOH A 181 681 119 HOH HOH . G 5 HOH A 182 682 225 HOH HOH . G 5 HOH A 183 683 67 HOH HOH . G 5 HOH A 184 684 231 HOH HOH . G 5 HOH A 185 685 190 HOH HOH . G 5 HOH A 186 686 255 HOH HOH . G 5 HOH A 187 687 221 HOH HOH . G 5 HOH A 188 688 241 HOH HOH . G 5 HOH A 189 689 163 HOH HOH . G 5 HOH A 190 690 192 HOH HOH . G 5 HOH A 191 691 71 HOH HOH . G 5 HOH A 192 692 108 HOH HOH . G 5 HOH A 193 693 289 HOH HOH . G 5 HOH A 194 694 103 HOH HOH . G 5 HOH A 195 695 90 HOH HOH . G 5 HOH A 196 696 156 HOH HOH . G 5 HOH A 197 697 253 HOH HOH . G 5 HOH A 198 698 205 HOH HOH . G 5 HOH A 199 699 300 HOH HOH . G 5 HOH A 200 700 83 HOH HOH . G 5 HOH A 201 701 16 HOH HOH . G 5 HOH A 202 702 251 HOH HOH . G 5 HOH A 203 703 92 HOH HOH . G 5 HOH A 204 704 282 HOH HOH . G 5 HOH A 205 705 158 HOH HOH . G 5 HOH A 206 706 318 HOH HOH . G 5 HOH A 207 707 321 HOH HOH . G 5 HOH A 208 708 215 HOH HOH . G 5 HOH A 209 709 193 HOH HOH . G 5 HOH A 210 710 245 HOH HOH . G 5 HOH A 211 711 227 HOH HOH . G 5 HOH A 212 712 267 HOH HOH . G 5 HOH A 213 713 262 HOH HOH . G 5 HOH A 214 714 168 HOH HOH . G 5 HOH A 215 715 254 HOH HOH . G 5 HOH A 216 716 319 HOH HOH . G 5 HOH A 217 717 270 HOH HOH . G 5 HOH A 218 718 194 HOH HOH . G 5 HOH A 219 719 107 HOH HOH . G 5 HOH A 220 720 242 HOH HOH . G 5 HOH A 221 721 320 HOH HOH . G 5 HOH A 222 722 62 HOH HOH . G 5 HOH A 223 723 290 HOH HOH . G 5 HOH A 224 724 304 HOH HOH . G 5 HOH A 225 725 295 HOH HOH . G 5 HOH A 226 726 155 HOH HOH . G 5 HOH A 227 727 148 HOH HOH . G 5 HOH A 228 728 116 HOH HOH . G 5 HOH A 229 729 263 HOH HOH . G 5 HOH A 230 730 30 HOH HOH . G 5 HOH A 231 731 305 HOH HOH . G 5 HOH A 232 732 226 HOH HOH . G 5 HOH A 233 733 121 HOH HOH . G 5 HOH A 234 734 104 HOH HOH . G 5 HOH A 235 735 234 HOH HOH . G 5 HOH A 236 736 147 HOH HOH . G 5 HOH A 237 737 330 HOH HOH . G 5 HOH A 238 738 306 HOH HOH . G 5 HOH A 239 739 179 HOH HOH . G 5 HOH A 240 740 329 HOH HOH . G 5 HOH A 241 741 297 HOH HOH . G 5 HOH A 242 742 142 HOH HOH . G 5 HOH A 243 743 84 HOH HOH . G 5 HOH A 244 744 195 HOH HOH . G 5 HOH A 245 745 37 HOH HOH . G 5 HOH A 246 746 123 HOH HOH . G 5 HOH A 247 747 197 HOH HOH . G 5 HOH A 248 748 275 HOH HOH . G 5 HOH A 249 749 250 HOH HOH . G 5 HOH A 250 750 260 HOH HOH . G 5 HOH A 251 751 230 HOH HOH . G 5 HOH A 252 752 188 HOH HOH . G 5 HOH A 253 753 174 HOH HOH . G 5 HOH A 254 754 157 HOH HOH . G 5 HOH A 255 755 172 HOH HOH . G 5 HOH A 256 756 222 HOH HOH . G 5 HOH A 257 757 279 HOH HOH . G 5 HOH A 258 758 141 HOH HOH . G 5 HOH A 259 759 198 HOH HOH . G 5 HOH A 260 760 258 HOH HOH . G 5 HOH A 261 761 76 HOH HOH . G 5 HOH A 262 762 273 HOH HOH . G 5 HOH A 263 763 212 HOH HOH . G 5 HOH A 264 764 223 HOH HOH . G 5 HOH A 265 765 178 HOH HOH . G 5 HOH A 266 766 294 HOH HOH . G 5 HOH A 267 767 162 HOH HOH . G 5 HOH A 268 768 283 HOH HOH . G 5 HOH A 269 769 200 HOH HOH . G 5 HOH A 270 770 293 HOH HOH . G 5 HOH A 271 771 240 HOH HOH . G 5 HOH A 272 772 106 HOH HOH . G 5 HOH A 273 773 217 HOH HOH . G 5 HOH A 274 774 87 HOH HOH . G 5 HOH A 275 775 151 HOH HOH . G 5 HOH A 276 776 133 HOH HOH . G 5 HOH A 277 777 196 HOH HOH . G 5 HOH A 278 778 201 HOH HOH . G 5 HOH A 279 779 219 HOH HOH . G 5 HOH A 280 780 132 HOH HOH . G 5 HOH A 281 781 146 HOH HOH . G 5 HOH A 282 782 314 HOH HOH . G 5 HOH A 283 783 191 HOH HOH . G 5 HOH A 284 784 243 HOH HOH . G 5 HOH A 285 785 224 HOH HOH . G 5 HOH A 286 786 101 HOH HOH . G 5 HOH A 287 787 181 HOH HOH . G 5 HOH A 288 788 268 HOH HOH . G 5 HOH A 289 789 98 HOH HOH . G 5 HOH A 290 790 316 HOH HOH . G 5 HOH A 291 791 322 HOH HOH . G 5 HOH A 292 792 102 HOH HOH . G 5 HOH A 293 793 207 HOH HOH . G 5 HOH A 294 794 97 HOH HOH . G 5 HOH A 295 795 264 HOH HOH . G 5 HOH A 296 796 173 HOH HOH . G 5 HOH A 297 797 214 HOH HOH . G 5 HOH A 298 798 95 HOH HOH . G 5 HOH A 299 799 249 HOH HOH . G 5 HOH A 300 800 228 HOH HOH . G 5 HOH A 301 801 299 HOH HOH . G 5 HOH A 302 802 86 HOH HOH . G 5 HOH A 303 803 204 HOH HOH . G 5 HOH A 304 804 199 HOH HOH . G 5 HOH A 305 805 180 HOH HOH . G 5 HOH A 306 806 143 HOH HOH . G 5 HOH A 307 807 184 HOH HOH . G 5 HOH A 308 808 206 HOH HOH . G 5 HOH A 309 809 136 HOH HOH . G 5 HOH A 310 810 287 HOH HOH . G 5 HOH A 311 811 244 HOH HOH . G 5 HOH A 312 812 265 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -21.173 _atom_site.Cartn_y -17.167 _atom_site.Cartn_z -21.425 _atom_site.occupancy 0.55 _atom_site.B_iso_or_equiv 48.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #