data_5QQQ # _model_server_result.job_id SuzctvfL_C88N79p5Vfxdw _model_server_result.datetime_utc '2024-11-22 22:19:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":902}' # _entry.id 5QQQ # _exptl.entry_id 5QQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.1 _cell.angle_gamma 90 _cell.entry_id 5QQQ _cell.length_a 125.704 _cell.length_b 108.379 _cell.length_c 75.796 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 290 n y N1 C6 PLP sing 291 n y C2 C2A PLP sing 292 n n C2 C3 PLP sing 293 n y C2A H2A1 PLP sing 294 n n C2A H2A2 PLP sing 295 n n C2A H2A3 PLP sing 296 n n C3 O3 PLP sing 297 n n C3 C4 PLP doub 298 n y O3 HO3 PLP sing 299 n n C4 C4A PLP sing 300 n n C4 C5 PLP sing 301 n y C4A O4A PLP doub 302 n n C4A H4A PLP sing 303 n n C5 C6 PLP doub 304 n y C5 C5A PLP sing 305 n n C6 H6 PLP sing 306 n n C5A O4P PLP sing 307 n n C5A H5A1 PLP sing 308 n n C5A H5A2 PLP sing 309 n n O4P P PLP sing 310 n n P O1P PLP doub 311 n n P O2P PLP sing 312 n n P O3P PLP sing 313 n n O2P HOP2 PLP sing 314 n n O3P HOP3 PLP sing 315 n n # _atom_sites.entry_id 5QQQ _atom_sites.fract_transf_matrix[1][1] 0.007955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002755 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009227 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP B 1 601 601 PLP PLP . D 3 NSJ A 1 901 901 NSJ LIG . E 2 PLP A 1 902 601 PLP PLP . F 4 HOH B 1 701 799 HOH HOH . F 4 HOH B 2 702 702 HOH HOH . F 4 HOH B 3 703 701 HOH HOH . F 4 HOH B 4 704 706 HOH HOH . F 4 HOH B 5 705 712 HOH HOH . F 4 HOH B 6 706 709 HOH HOH . F 4 HOH B 7 707 717 HOH HOH . F 4 HOH B 8 708 714 HOH HOH . F 4 HOH B 9 709 716 HOH HOH . F 4 HOH B 10 710 727 HOH HOH . F 4 HOH B 11 711 720 HOH HOH . F 4 HOH B 12 712 710 HOH HOH . F 4 HOH B 13 713 827 HOH HOH . F 4 HOH B 14 714 723 HOH HOH . F 4 HOH B 15 715 780 HOH HOH . F 4 HOH B 16 716 741 HOH HOH . F 4 HOH B 17 717 705 HOH HOH . F 4 HOH B 18 718 773 HOH HOH . F 4 HOH B 19 719 707 HOH HOH . F 4 HOH B 20 720 810 HOH HOH . F 4 HOH B 21 721 729 HOH HOH . F 4 HOH B 22 722 770 HOH HOH . F 4 HOH B 23 723 732 HOH HOH . F 4 HOH B 24 724 708 HOH HOH . F 4 HOH B 25 725 779 HOH HOH . F 4 HOH B 26 726 731 HOH HOH . F 4 HOH B 27 727 772 HOH HOH . F 4 HOH B 28 728 715 HOH HOH . F 4 HOH B 29 729 787 HOH HOH . F 4 HOH B 30 730 795 HOH HOH . F 4 HOH B 31 731 806 HOH HOH . F 4 HOH B 32 732 733 HOH HOH . F 4 HOH B 33 733 753 HOH HOH . F 4 HOH B 34 734 749 HOH HOH . F 4 HOH B 35 735 713 HOH HOH . F 4 HOH B 36 736 719 HOH HOH . F 4 HOH B 37 737 721 HOH HOH . F 4 HOH B 38 738 755 HOH HOH . F 4 HOH B 39 739 734 HOH HOH . F 4 HOH B 40 740 725 HOH HOH . F 4 HOH B 41 741 730 HOH HOH . F 4 HOH B 42 742 791 HOH HOH . F 4 HOH B 43 743 767 HOH HOH . F 4 HOH B 44 744 766 HOH HOH . F 4 HOH B 45 745 704 HOH HOH . F 4 HOH B 46 746 818 HOH HOH . F 4 HOH B 47 747 748 HOH HOH . F 4 HOH B 48 748 832 HOH HOH . F 4 HOH B 49 749 742 HOH HOH . F 4 HOH B 50 750 711 HOH HOH . F 4 HOH B 51 751 756 HOH HOH . F 4 HOH B 52 752 738 HOH HOH . F 4 HOH B 53 753 769 HOH HOH . F 4 HOH B 54 754 765 HOH HOH . F 4 HOH B 55 755 762 HOH HOH . F 4 HOH B 56 756 743 HOH HOH . F 4 HOH B 57 757 768 HOH HOH . F 4 HOH B 58 758 746 HOH HOH . F 4 HOH B 59 759 764 HOH HOH . F 4 HOH B 60 760 735 HOH HOH . F 4 HOH B 61 761 728 HOH HOH . F 4 HOH B 62 762 769 HOH HOH . F 4 HOH B 63 763 736 HOH HOH . F 4 HOH B 64 764 754 HOH HOH . F 4 HOH B 65 765 750 HOH HOH . F 4 HOH B 66 766 790 HOH HOH . F 4 HOH B 67 767 801 HOH HOH . F 4 HOH B 68 768 747 HOH HOH . F 4 HOH B 69 769 718 HOH HOH . F 4 HOH B 70 770 744 HOH HOH . F 4 HOH B 71 771 760 HOH HOH . F 4 HOH B 72 772 786 HOH HOH . F 4 HOH B 73 773 776 HOH HOH . F 4 HOH B 74 774 739 HOH HOH . F 4 HOH B 75 775 800 HOH HOH . F 4 HOH B 76 776 807 HOH HOH . F 4 HOH B 77 777 724 HOH HOH . F 4 HOH B 78 778 764 HOH HOH . F 4 HOH B 79 779 763 HOH HOH . F 4 HOH B 80 780 809 HOH HOH . F 4 HOH B 81 781 752 HOH HOH . F 4 HOH B 82 782 809 HOH HOH . F 4 HOH B 83 783 771 HOH HOH . F 4 HOH B 84 784 751 HOH HOH . F 4 HOH B 85 785 794 HOH HOH . F 4 HOH B 86 786 761 HOH HOH . F 4 HOH B 87 787 789 HOH HOH . F 4 HOH B 88 788 737 HOH HOH . F 4 HOH B 89 789 797 HOH HOH . F 4 HOH B 90 790 775 HOH HOH . F 4 HOH B 91 791 782 HOH HOH . F 4 HOH B 92 792 820 HOH HOH . F 4 HOH B 93 793 745 HOH HOH . F 4 HOH B 94 794 759 HOH HOH . F 4 HOH B 95 795 778 HOH HOH . F 4 HOH B 96 796 821 HOH HOH . F 4 HOH B 97 797 763 HOH HOH . F 4 HOH B 98 798 777 HOH HOH . F 4 HOH B 99 799 787 HOH HOH . F 4 HOH B 100 800 792 HOH HOH . F 4 HOH B 101 801 808 HOH HOH . F 4 HOH B 102 802 814 HOH HOH . F 4 HOH B 103 803 740 HOH HOH . F 4 HOH B 104 804 802 HOH HOH . F 4 HOH B 105 805 784 HOH HOH . F 4 HOH B 106 806 758 HOH HOH . F 4 HOH B 107 807 819 HOH HOH . F 4 HOH B 108 808 788 HOH HOH . F 4 HOH B 109 809 817 HOH HOH . F 4 HOH B 110 810 785 HOH HOH . F 4 HOH B 111 811 825 HOH HOH . F 4 HOH B 112 812 745 HOH HOH . F 4 HOH B 113 813 774 HOH HOH . F 4 HOH B 114 814 805 HOH HOH . F 4 HOH B 115 815 811 HOH HOH . F 4 HOH B 116 816 815 HOH HOH . F 4 HOH B 117 817 793 HOH HOH . F 4 HOH B 118 818 747 HOH HOH . F 4 HOH B 119 819 812 HOH HOH . F 4 HOH B 120 820 816 HOH HOH . F 4 HOH B 121 821 803 HOH HOH . F 4 HOH B 122 822 798 HOH HOH . F 4 HOH B 123 823 830 HOH HOH . F 4 HOH B 124 824 823 HOH HOH . F 4 HOH B 125 825 826 HOH HOH . F 4 HOH B 126 826 813 HOH HOH . F 4 HOH B 127 827 828 HOH HOH . F 4 HOH B 128 828 834 HOH HOH . F 4 HOH B 129 829 831 HOH HOH . F 4 HOH B 130 830 824 HOH HOH . F 4 HOH B 131 831 804 HOH HOH . F 4 HOH B 132 832 833 HOH HOH . F 4 HOH B 133 833 835 HOH HOH . G 4 HOH A 1 1001 733 HOH HOH . G 4 HOH A 2 1002 720 HOH HOH . G 4 HOH A 3 1003 716 HOH HOH . G 4 HOH A 4 1004 748 HOH HOH . G 4 HOH A 5 1005 702 HOH HOH . G 4 HOH A 6 1006 731 HOH HOH . G 4 HOH A 7 1007 766 HOH HOH . G 4 HOH A 8 1008 740 HOH HOH . G 4 HOH A 9 1009 759 HOH HOH . G 4 HOH A 10 1010 703 HOH HOH . G 4 HOH A 11 1011 708 HOH HOH . G 4 HOH A 12 1012 739 HOH HOH . G 4 HOH A 13 1013 710 HOH HOH . G 4 HOH A 14 1014 738 HOH HOH . G 4 HOH A 15 1015 718 HOH HOH . G 4 HOH A 16 1016 723 HOH HOH . G 4 HOH A 17 1017 705 HOH HOH . G 4 HOH A 18 1018 781 HOH HOH . G 4 HOH A 19 1019 752 HOH HOH . G 4 HOH A 20 1020 724 HOH HOH . G 4 HOH A 21 1021 778 HOH HOH . G 4 HOH A 22 1022 726 HOH HOH . G 4 HOH A 23 1023 727 HOH HOH . G 4 HOH A 24 1024 713 HOH HOH . G 4 HOH A 25 1025 728 HOH HOH . G 4 HOH A 26 1026 782 HOH HOH . G 4 HOH A 27 1027 791 HOH HOH . G 4 HOH A 28 1028 721 HOH HOH . G 4 HOH A 29 1029 722 HOH HOH . G 4 HOH A 30 1030 729 HOH HOH . G 4 HOH A 31 1031 735 HOH HOH . G 4 HOH A 32 1032 711 HOH HOH . G 4 HOH A 33 1033 712 HOH HOH . G 4 HOH A 34 1034 717 HOH HOH . G 4 HOH A 35 1035 732 HOH HOH . G 4 HOH A 36 1036 758 HOH HOH . G 4 HOH A 37 1037 722 HOH HOH . G 4 HOH A 38 1038 793 HOH HOH . G 4 HOH A 39 1039 781 HOH HOH . G 4 HOH A 40 1040 796 HOH HOH . G 4 HOH A 41 1041 742 HOH HOH . G 4 HOH A 42 1042 779 HOH HOH . G 4 HOH A 43 1043 730 HOH HOH . G 4 HOH A 44 1044 704 HOH HOH . G 4 HOH A 45 1045 714 HOH HOH . G 4 HOH A 46 1046 797 HOH HOH . G 4 HOH A 47 1047 734 HOH HOH . G 4 HOH A 48 1048 806 HOH HOH . G 4 HOH A 49 1049 707 HOH HOH . G 4 HOH A 50 1050 749 HOH HOH . G 4 HOH A 51 1051 701 HOH HOH . G 4 HOH A 52 1052 756 HOH HOH . G 4 HOH A 53 1053 783 HOH HOH . G 4 HOH A 54 1054 709 HOH HOH . G 4 HOH A 55 1055 743 HOH HOH . G 4 HOH A 56 1056 762 HOH HOH . G 4 HOH A 57 1057 703 HOH HOH . G 4 HOH A 58 1058 783 HOH HOH . G 4 HOH A 59 1059 746 HOH HOH . G 4 HOH A 60 1060 706 HOH HOH . G 4 HOH A 61 1061 719 HOH HOH . G 4 HOH A 62 1062 780 HOH HOH . G 4 HOH A 63 1063 736 HOH HOH . G 4 HOH A 64 1064 726 HOH HOH . G 4 HOH A 65 1065 725 HOH HOH . G 4 HOH A 66 1066 773 HOH HOH . G 4 HOH A 67 1067 795 HOH HOH . G 4 HOH A 68 1068 789 HOH HOH . G 4 HOH A 69 1069 741 HOH HOH . G 4 HOH A 70 1070 753 HOH HOH . G 4 HOH A 71 1071 755 HOH HOH . G 4 HOH A 72 1072 765 HOH HOH . G 4 HOH A 73 1073 774 HOH HOH . G 4 HOH A 74 1074 754 HOH HOH . G 4 HOH A 75 1075 784 HOH HOH . G 4 HOH A 76 1076 786 HOH HOH . G 4 HOH A 77 1077 757 HOH HOH . G 4 HOH A 78 1078 750 HOH HOH . G 4 HOH A 79 1079 767 HOH HOH . G 4 HOH A 80 1080 737 HOH HOH . G 4 HOH A 81 1081 715 HOH HOH . G 4 HOH A 82 1082 757 HOH HOH . G 4 HOH A 83 1083 777 HOH HOH . G 4 HOH A 84 1084 804 HOH HOH . G 4 HOH A 85 1085 772 HOH HOH . G 4 HOH A 86 1086 775 HOH HOH . G 4 HOH A 87 1087 771 HOH HOH . G 4 HOH A 88 1088 811 HOH HOH . G 4 HOH A 89 1089 776 HOH HOH . G 4 HOH A 90 1090 790 HOH HOH . G 4 HOH A 91 1091 744 HOH HOH . G 4 HOH A 92 1092 796 HOH HOH . G 4 HOH A 93 1093 770 HOH HOH . G 4 HOH A 94 1094 751 HOH HOH . G 4 HOH A 95 1095 829 HOH HOH . G 4 HOH A 96 1096 768 HOH HOH . G 4 HOH A 97 1097 761 HOH HOH . G 4 HOH A 98 1098 788 HOH HOH . G 4 HOH A 99 1099 794 HOH HOH . G 4 HOH A 100 1100 785 HOH HOH . G 4 HOH A 101 1101 807 HOH HOH . G 4 HOH A 102 1102 822 HOH HOH . G 4 HOH A 103 1103 799 HOH HOH . G 4 HOH A 104 1104 800 HOH HOH . G 4 HOH A 105 1105 810 HOH HOH . G 4 HOH A 106 1106 798 HOH HOH . G 4 HOH A 107 1107 792 HOH HOH . G 4 HOH A 108 1108 802 HOH HOH . G 4 HOH A 109 1109 801 HOH HOH . G 4 HOH A 110 1110 760 HOH HOH . G 4 HOH A 111 1111 808 HOH HOH . G 4 HOH A 112 1112 803 HOH HOH . G 4 HOH A 113 1113 812 HOH HOH . G 4 HOH A 114 1114 805 HOH HOH . G 4 HOH A 115 1115 836 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . E 2 30.543 -23.984 23.961 1 36.26 ? N1 PLP 902 A 1 HETATM 2 C C2 PLP . . . E 2 29.706 -23.189 24.628 1 38.59 ? C2 PLP 902 A 1 HETATM 3 C C2A PLP . . . E 2 29.68 -23.286 26.12 1 35.45 ? C2A PLP 902 A 1 HETATM 4 C C3 PLP . . . E 2 28.871 -22.272 23.931 1 38.45 ? C3 PLP 902 A 1 HETATM 5 O O3 PLP . . . E 2 28.037 -21.464 24.629 1 36.97 ? O3 PLP 902 A 1 HETATM 6 C C4 PLP . . . E 2 28.933 -22.204 22.525 1 39.25 ? C4 PLP 902 A 1 HETATM 7 C C4A PLP . . . E 2 28.028 -21.268 21.835 1 43.78 ? C4A PLP 902 A 1 HETATM 8 O O4A PLP . . . E 2 28.322 -20.294 21.174 1 48.94 ? O4A PLP 902 A 1 HETATM 9 C C5 PLP . . . E 2 29.826 -23.075 21.864 1 38.16 ? C5 PLP 902 A 1 HETATM 10 C C6 PLP . . . E 2 30.598 -23.923 22.616 1 35.02 ? C6 PLP 902 A 1 HETATM 11 C C5A PLP . . . E 2 30.002 -23.07 20.367 1 37.49 ? C5A PLP 902 A 1 HETATM 12 O O4P PLP . . . E 2 31.029 -22.11 19.928 1 31.7 ? O4P PLP 902 A 1 HETATM 13 P P PLP . . . E 2 30.731 -21.474 18.456 1 35.65 ? P PLP 902 A 1 HETATM 14 O O1P PLP . . . E 2 30.197 -22.629 17.587 1 32.96 ? O1P PLP 902 A 1 HETATM 15 O O2P PLP . . . E 2 32.05 -20.884 17.956 1 34.11 ? O2P PLP 902 A 1 HETATM 16 O O3P PLP . . . E 2 29.657 -20.419 18.633 1 38.18 ? O3P PLP 902 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #