data_5QQU
#
_model_server_result.job_id            Wtq3wFpgC_4crI0t4pwXYw 
_model_server_result.datetime_utc      '2025-01-10 09:20:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qqu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":602}' 
#
_entry.id    5QQU 
#
_exptl.entry_id    5QQU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              203.24 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(1,4-oxazepan-4-yl)pyridine-2-carbonitrile 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.03 
_cell.angle_gamma         90 
_cell.entry_id            5QQU 
_cell.length_a            126.098 
_cell.length_b            108.53 
_cell.length_c            75.721 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QQU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
? 3 G N N 
#
_chem_comp.formula           'C11 H13 N3 O' 
_chem_comp.formula_weight    203.24 
_chem_comp.id                NTG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(1,4-oxazepan-4-yl)pyridine-2-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C10 NTG sing 237 n n 
C11 N3 NTG sing 238 n n 
C10 O1 NTG sing 239 n n 
N3 C5 NTG sing 240 n n 
N3 C7 NTG sing 241 n n 
C4 C5 NTG doub 242 n y 
C4 C3 NTG sing 243 n y 
C5 C6 NTG sing 244 n y 
C7 C8 NTG sing 245 n n 
C8 C9 NTG sing 246 n n 
C3 C2 NTG doub 247 n y 
O1 C9 NTG sing 248 n n 
C6 N2 NTG doub 249 n y 
C2 N2 NTG sing 250 n y 
C2 C1 NTG sing 251 n n 
C1 N1 NTG trip 252 n n 
C4 H1 NTG sing 253 n n 
C6 H2 NTG sing 254 n n 
C7 H3 NTG sing 255 n n 
C7 H4 NTG sing 256 n n 
C8 H5 NTG sing 257 n n 
C8 H6 NTG sing 258 n n 
C10 H7 NTG sing 259 n n 
C10 H8 NTG sing 260 n n 
C11 H9 NTG sing 261 n n 
C11 H10 NTG sing 262 n n 
C3 H11 NTG sing 263 n n 
C9 H12 NTG sing 264 n n 
C9 H13 NTG sing 265 n n 
#
_atom_sites.entry_id                     5QQU 
_atom_sites.fract_transf_matrix[1][1]    0.00793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002736 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009214 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01397 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP B 1 601 601 PLP PLP . 
D 3 NTG B 1 602 901 NTG LIG . 
E 2 PLP A 1 601 601 PLP PLP . 
F 3 NTG A 1 602 901 NTG LIG . 
G 3 NTG A 1 603 1001 NTG LIG . 
H 4 HOH B 1 701 702 HOH HOH . 
H 4 HOH B 2 702 732 HOH HOH . 
H 4 HOH B 3 703 791 HOH HOH . 
H 4 HOH B 4 704 717 HOH HOH . 
H 4 HOH B 5 705 705 HOH HOH . 
H 4 HOH B 6 706 701 HOH HOH . 
H 4 HOH B 7 707 827 HOH HOH . 
H 4 HOH B 8 708 795 HOH HOH . 
H 4 HOH B 9 709 714 HOH HOH . 
H 4 HOH B 10 710 758 HOH HOH . 
H 4 HOH B 11 711 741 HOH HOH . 
H 4 HOH B 12 712 765 HOH HOH . 
H 4 HOH B 13 713 709 HOH HOH . 
H 4 HOH B 14 714 729 HOH HOH . 
H 4 HOH B 15 715 704 HOH HOH . 
H 4 HOH B 16 716 712 HOH HOH . 
H 4 HOH B 17 717 721 HOH HOH . 
H 4 HOH B 18 718 716 HOH HOH . 
H 4 HOH B 19 719 708 HOH HOH . 
H 4 HOH B 20 720 824 HOH HOH . 
H 4 HOH B 21 721 762 HOH HOH . 
H 4 HOH B 22 722 727 HOH HOH . 
H 4 HOH B 23 723 725 HOH HOH . 
H 4 HOH B 24 724 710 HOH HOH . 
H 4 HOH B 25 725 733 HOH HOH . 
H 4 HOH B 26 726 720 HOH HOH . 
H 4 HOH B 27 727 726 HOH HOH . 
H 4 HOH B 28 728 764 HOH HOH . 
H 4 HOH B 29 729 712 HOH HOH . 
H 4 HOH B 30 730 738 HOH HOH . 
H 4 HOH B 31 731 713 HOH HOH . 
H 4 HOH B 32 732 730 HOH HOH . 
H 4 HOH B 33 733 750 HOH HOH . 
H 4 HOH B 34 734 748 HOH HOH . 
H 4 HOH B 35 735 780 HOH HOH . 
H 4 HOH B 36 736 787 HOH HOH . 
H 4 HOH B 37 737 719 HOH HOH . 
H 4 HOH B 38 738 815 HOH HOH . 
H 4 HOH B 39 739 731 HOH HOH . 
H 4 HOH B 40 740 769 HOH HOH . 
H 4 HOH B 41 741 749 HOH HOH . 
H 4 HOH B 42 742 810 HOH HOH . 
H 4 HOH B 43 743 706 HOH HOH . 
H 4 HOH B 44 744 779 HOH HOH . 
H 4 HOH B 45 745 764 HOH HOH . 
H 4 HOH B 46 746 756 HOH HOH . 
H 4 HOH B 47 747 736 HOH HOH . 
H 4 HOH B 48 748 832 HOH HOH . 
H 4 HOH B 49 749 742 HOH HOH . 
H 4 HOH B 50 750 768 HOH HOH . 
H 4 HOH B 51 751 806 HOH HOH . 
H 4 HOH B 52 752 826 HOH HOH . 
H 4 HOH B 53 753 767 HOH HOH . 
H 4 HOH B 54 754 753 HOH HOH . 
H 4 HOH B 55 755 790 HOH HOH . 
H 4 HOH B 56 756 770 HOH HOH . 
H 4 HOH B 57 757 818 HOH HOH . 
H 4 HOH B 58 758 715 HOH HOH . 
H 4 HOH B 59 759 772 HOH HOH . 
H 4 HOH B 60 760 734 HOH HOH . 
H 4 HOH B 61 761 711 HOH HOH . 
H 4 HOH B 62 762 766 HOH HOH . 
H 4 HOH B 63 763 760 HOH HOH . 
H 4 HOH B 64 764 755 HOH HOH . 
H 4 HOH B 65 765 807 HOH HOH . 
H 4 HOH B 66 766 786 HOH HOH . 
H 4 HOH B 67 767 797 HOH HOH . 
H 4 HOH B 68 768 773 HOH HOH . 
H 4 HOH B 69 769 718 HOH HOH . 
H 4 HOH B 70 770 775 HOH HOH . 
H 4 HOH B 71 771 744 HOH HOH . 
H 4 HOH B 72 772 746 HOH HOH . 
H 4 HOH B 73 773 723 HOH HOH . 
H 4 HOH B 74 774 747 HOH HOH . 
H 4 HOH B 75 775 800 HOH HOH . 
H 4 HOH B 76 776 787 HOH HOH . 
H 4 HOH B 77 777 761 HOH HOH . 
H 4 HOH B 78 778 769 HOH HOH . 
H 4 HOH B 79 779 799 HOH HOH . 
H 4 HOH B 80 780 737 HOH HOH . 
H 4 HOH B 81 781 743 HOH HOH . 
H 4 HOH B 82 782 792 HOH HOH . 
H 4 HOH B 83 783 759 HOH HOH . 
H 4 HOH B 84 784 752 HOH HOH . 
H 4 HOH B 85 785 724 HOH HOH . 
H 4 HOH B 86 786 735 HOH HOH . 
H 4 HOH B 87 787 763 HOH HOH . 
H 4 HOH B 88 788 783 HOH HOH . 
H 4 HOH B 89 789 739 HOH HOH . 
H 4 HOH B 90 790 771 HOH HOH . 
H 4 HOH B 91 791 745 HOH HOH . 
H 4 HOH B 92 792 740 HOH HOH . 
H 4 HOH B 93 793 784 HOH HOH . 
H 4 HOH B 94 794 754 HOH HOH . 
H 4 HOH B 95 795 751 HOH HOH . 
H 4 HOH B 96 796 789 HOH HOH . 
H 4 HOH B 97 797 728 HOH HOH . 
H 4 HOH B 98 798 801 HOH HOH . 
H 4 HOH B 99 799 757 HOH HOH . 
H 4 HOH B 100 800 805 HOH HOH . 
H 4 HOH B 101 801 809 HOH HOH . 
H 4 HOH B 102 802 782 HOH HOH . 
H 4 HOH B 103 803 794 HOH HOH . 
H 4 HOH B 104 804 813 HOH HOH . 
H 4 HOH B 105 805 774 HOH HOH . 
H 4 HOH B 106 806 820 HOH HOH . 
H 4 HOH B 107 807 777 HOH HOH . 
H 4 HOH B 108 808 825 HOH HOH . 
H 4 HOH B 109 809 778 HOH HOH . 
H 4 HOH B 110 810 819 HOH HOH . 
H 4 HOH B 111 811 785 HOH HOH . 
H 4 HOH B 112 812 747 HOH HOH . 
H 4 HOH B 113 813 808 HOH HOH . 
H 4 HOH B 114 814 798 HOH HOH . 
H 4 HOH B 115 815 803 HOH HOH . 
H 4 HOH B 116 816 811 HOH HOH . 
H 4 HOH B 117 817 814 HOH HOH . 
H 4 HOH B 118 818 828 HOH HOH . 
H 4 HOH B 119 819 793 HOH HOH . 
H 4 HOH B 120 820 823 HOH HOH . 
H 4 HOH B 121 821 817 HOH HOH . 
H 4 HOH B 122 822 809 HOH HOH . 
H 4 HOH B 123 823 788 HOH HOH . 
H 4 HOH B 124 824 812 HOH HOH . 
H 4 HOH B 125 825 821 HOH HOH . 
H 4 HOH B 126 826 816 HOH HOH . 
H 4 HOH B 127 827 834 HOH HOH . 
H 4 HOH B 128 828 831 HOH HOH . 
H 4 HOH B 129 829 833 HOH HOH . 
H 4 HOH B 130 830 830 HOH HOH . 
H 4 HOH B 131 831 804 HOH HOH . 
H 4 HOH B 132 832 835 HOH HOH . 
I 4 HOH A 1 701 731 HOH HOH . 
I 4 HOH A 2 702 733 HOH HOH . 
I 4 HOH A 3 703 716 HOH HOH . 
I 4 HOH A 4 704 703 HOH HOH . 
I 4 HOH A 5 705 740 HOH HOH . 
I 4 HOH A 6 706 722 HOH HOH . 
I 4 HOH A 7 707 710 HOH HOH . 
I 4 HOH A 8 708 707 HOH HOH . 
I 4 HOH A 9 709 720 HOH HOH . 
I 4 HOH A 10 710 724 HOH HOH . 
I 4 HOH A 11 711 721 HOH HOH . 
I 4 HOH A 12 712 713 HOH HOH . 
I 4 HOH A 13 713 702 HOH HOH . 
I 4 HOH A 14 714 735 HOH HOH . 
I 4 HOH A 15 715 781 HOH HOH . 
I 4 HOH A 16 716 723 HOH HOH . 
I 4 HOH A 17 717 729 HOH HOH . 
I 4 HOH A 18 718 707 HOH HOH . 
I 4 HOH A 19 719 748 HOH HOH . 
I 4 HOH A 20 720 705 HOH HOH . 
I 4 HOH A 21 721 718 HOH HOH . 
I 4 HOH A 22 722 704 HOH HOH . 
I 4 HOH A 23 723 738 HOH HOH . 
I 4 HOH A 24 724 757 HOH HOH . 
I 4 HOH A 25 725 715 HOH HOH . 
I 4 HOH A 26 726 727 HOH HOH . 
I 4 HOH A 27 727 722 HOH HOH . 
I 4 HOH A 28 728 739 HOH HOH . 
I 4 HOH A 29 729 725 HOH HOH . 
I 4 HOH A 30 730 711 HOH HOH . 
I 4 HOH A 31 731 728 HOH HOH . 
I 4 HOH A 32 732 736 HOH HOH . 
I 4 HOH A 33 733 771 HOH HOH . 
I 4 HOH A 34 734 755 HOH HOH . 
I 4 HOH A 35 735 726 HOH HOH . 
I 4 HOH A 36 736 708 HOH HOH . 
I 4 HOH A 37 737 774 HOH HOH . 
I 4 HOH A 38 738 741 HOH HOH . 
I 4 HOH A 39 739 732 HOH HOH . 
I 4 HOH A 40 740 780 HOH HOH . 
I 4 HOH A 41 741 706 HOH HOH . 
I 4 HOH A 42 742 734 HOH HOH . 
I 4 HOH A 43 743 737 HOH HOH . 
I 4 HOH A 44 744 709 HOH HOH . 
I 4 HOH A 45 745 804 HOH HOH . 
I 4 HOH A 46 746 714 HOH HOH . 
I 4 HOH A 47 747 717 HOH HOH . 
I 4 HOH A 48 748 752 HOH HOH . 
I 4 HOH A 49 749 743 HOH HOH . 
I 4 HOH A 50 750 782 HOH HOH . 
I 4 HOH A 51 751 790 HOH HOH . 
I 4 HOH A 52 752 783 HOH HOH . 
I 4 HOH A 53 753 793 HOH HOH . 
I 4 HOH A 54 754 742 HOH HOH . 
I 4 HOH A 55 755 791 HOH HOH . 
I 4 HOH A 56 756 767 HOH HOH . 
I 4 HOH A 57 757 766 HOH HOH . 
I 4 HOH A 58 758 730 HOH HOH . 
I 4 HOH A 59 759 773 HOH HOH . 
I 4 HOH A 60 760 778 HOH HOH . 
I 4 HOH A 61 761 777 HOH HOH . 
I 4 HOH A 62 762 759 HOH HOH . 
I 4 HOH A 63 763 797 HOH HOH . 
I 4 HOH A 64 764 763 HOH HOH . 
I 4 HOH A 65 765 703 HOH HOH . 
I 4 HOH A 66 766 745 HOH HOH . 
I 4 HOH A 67 767 776 HOH HOH . 
I 4 HOH A 68 768 779 HOH HOH . 
I 4 HOH A 69 769 756 HOH HOH . 
I 4 HOH A 70 770 776 HOH HOH . 
I 4 HOH A 71 771 806 HOH HOH . 
I 4 HOH A 72 772 744 HOH HOH . 
I 4 HOH A 73 773 701 HOH HOH . 
I 4 HOH A 74 774 810 HOH HOH . 
I 4 HOH A 75 775 765 HOH HOH . 
I 4 HOH A 76 776 750 HOH HOH . 
I 4 HOH A 77 777 758 HOH HOH . 
I 4 HOH A 78 778 781 HOH HOH . 
I 4 HOH A 79 779 719 HOH HOH . 
I 4 HOH A 80 780 754 HOH HOH . 
I 4 HOH A 81 781 762 HOH HOH . 
I 4 HOH A 82 782 746 HOH HOH . 
I 4 HOH A 83 783 811 HOH HOH . 
I 4 HOH A 84 784 796 HOH HOH . 
I 4 HOH A 85 785 796 HOH HOH . 
I 4 HOH A 86 786 786 HOH HOH . 
I 4 HOH A 87 787 784 HOH HOH . 
I 4 HOH A 88 788 751 HOH HOH . 
I 4 HOH A 89 789 795 HOH HOH . 
I 4 HOH A 90 790 753 HOH HOH . 
I 4 HOH A 91 791 789 HOH HOH . 
I 4 HOH A 92 792 772 HOH HOH . 
I 4 HOH A 93 793 770 HOH HOH . 
I 4 HOH A 94 794 761 HOH HOH . 
I 4 HOH A 95 795 802 HOH HOH . 
I 4 HOH A 96 796 768 HOH HOH . 
I 4 HOH A 97 797 798 HOH HOH . 
I 4 HOH A 98 798 775 HOH HOH . 
I 4 HOH A 99 799 749 HOH HOH . 
I 4 HOH A 100 800 788 HOH HOH . 
I 4 HOH A 101 801 785 HOH HOH . 
I 4 HOH A 102 802 803 HOH HOH . 
I 4 HOH A 103 803 802 HOH HOH . 
I 4 HOH A 104 804 822 HOH HOH . 
I 4 HOH A 105 805 792 HOH HOH . 
I 4 HOH A 106 806 829 HOH HOH . 
I 4 HOH A 107 807 794 HOH HOH . 
I 4 HOH A 108 808 760 HOH HOH . 
I 4 HOH A 109 809 800 HOH HOH . 
I 4 HOH A 110 810 801 HOH HOH . 
I 4 HOH A 111 811 799 HOH HOH . 
I 4 HOH A 112 812 808 HOH HOH . 
I 4 HOH A 113 813 807 HOH HOH . 
I 4 HOH A 114 814 812 HOH HOH . 
I 4 HOH A 115 815 805 HOH HOH . 
I 4 HOH A 116 816 836 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NTG . . . D 3 26.329 -45.704 13.51 1 34.38 ? N1 NTG 602 B 1 
HETATM 2 N N3 NTG . . . D 3 21.601 -45.362 18.289 1 43.59 ? N3 NTG 602 B 1 
HETATM 3 C C4 NTG . . . D 3 22.98 -44.194 16.666 1 41.83 ? C4 NTG 602 B 1 
HETATM 4 C C5 NTG . . . D 3 22.567 -45.372 17.305 1 43.18 ? C5 NTG 602 B 1 
HETATM 5 C C6 NTG . . . D 3 23.157 -46.569 16.89 1 40.6 ? C6 NTG 602 B 1 
HETATM 6 C C7 NTG . . . D 3 20.924 -44.135 18.713 1 42.65 ? C7 NTG 602 B 1 
HETATM 7 C C8 NTG . . . D 3 19.603 -43.888 18 1 44.69 ? C8 NTG 602 B 1 
HETATM 8 C C10 NTG . . . D 3 19.926 -47.178 18.192 1 45.97 ? C10 NTG 602 B 1 
HETATM 9 C C1 NTG . . . D 3 25.499 -45.604 14.302 1 38.32 ? C1 NTG 602 B 1 
HETATM 10 C C11 NTG . . . D 3 21.119 -46.591 18.914 1 44.85 ? C11 NTG 602 B 1 
HETATM 11 C C2 NTG . . . D 3 24.484 -45.486 15.333 1 39.84 ? C2 NTG 602 B 1 
HETATM 12 C C3 NTG . . . D 3 23.95 -44.252 15.678 1 41.23 ? C3 NTG 602 B 1 
HETATM 13 C C9 NTG . . . D 3 19.061 -45.101 17.266 1 45.9 ? C9 NTG 602 B 1 
HETATM 14 N N2 NTG . . . D 3 24.093 -46.626 15.932 1 40.89 ? N2 NTG 602 B 1 
HETATM 15 O O1 NTG . . . D 3 18.895 -46.194 18.166 1 46.06 ? O1 NTG 602 B 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           15 
#