data_5QR2 # _model_server_result.job_id il7cUwtFV-lexznAQmbYFQ _model_server_result.datetime_utc '2024-11-14 17:16:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 5QR2 # _exptl.entry_id 5QR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 203.24 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(1,4-oxazepan-4-yl)pyridine-2-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.11 _cell.angle_gamma 90 _cell.entry_id 5QR2 _cell.length_a 125.522 _cell.length_b 108.137 _cell.length_c 75.521 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 N3 O' _chem_comp.formula_weight 203.24 _chem_comp.id NTG _chem_comp.mon_nstd_flag . _chem_comp.name 5-(1,4-oxazepan-4-yl)pyridine-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 NTG sing 237 n n C11 N3 NTG sing 238 n n C10 O1 NTG sing 239 n n N3 C5 NTG sing 240 n n N3 C7 NTG sing 241 n n C4 C5 NTG doub 242 n y C4 C3 NTG sing 243 n y C5 C6 NTG sing 244 n y C7 C8 NTG sing 245 n n C8 C9 NTG sing 246 n n C3 C2 NTG doub 247 n y O1 C9 NTG sing 248 n n C6 N2 NTG doub 249 n y C2 N2 NTG sing 250 n y C2 C1 NTG sing 251 n n C1 N1 NTG trip 252 n n C4 H1 NTG sing 253 n n C6 H2 NTG sing 254 n n C7 H3 NTG sing 255 n n C7 H4 NTG sing 256 n n C8 H5 NTG sing 257 n n C8 H6 NTG sing 258 n n C10 H7 NTG sing 259 n n C10 H8 NTG sing 260 n n C11 H9 NTG sing 261 n n C11 H10 NTG sing 262 n n C3 H11 NTG sing 263 n n C9 H12 NTG sing 264 n n C9 H13 NTG sing 265 n n # _atom_sites.entry_id 5QR2 _atom_sites.fract_transf_matrix[1][1] 0.007967 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00276 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009248 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014013 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP B 1 601 601 PLP PLP . D 2 PLP A 1 601 601 PLP PLP . E 3 NTG A 1 602 901 NTG LIG . F 4 HOH B 1 701 799 HOH HOH . F 4 HOH B 2 702 702 HOH HOH . F 4 HOH B 3 703 738 HOH HOH . F 4 HOH B 4 704 705 HOH HOH . F 4 HOH B 5 705 717 HOH HOH . F 4 HOH B 6 706 732 HOH HOH . F 4 HOH B 7 707 701 HOH HOH . F 4 HOH B 8 708 795 HOH HOH . F 4 HOH B 9 709 709 HOH HOH . F 4 HOH B 10 710 791 HOH HOH . F 4 HOH B 11 711 729 HOH HOH . F 4 HOH B 12 712 714 HOH HOH . F 4 HOH B 13 713 741 HOH HOH . F 4 HOH B 14 714 712 HOH HOH . F 4 HOH B 15 715 704 HOH HOH . F 4 HOH B 16 716 733 HOH HOH . F 4 HOH B 17 717 706 HOH HOH . F 4 HOH B 18 718 716 HOH HOH . F 4 HOH B 19 719 770 HOH HOH . F 4 HOH B 20 720 730 HOH HOH . F 4 HOH B 21 721 727 HOH HOH . F 4 HOH B 22 722 764 HOH HOH . F 4 HOH B 23 723 750 HOH HOH . F 4 HOH B 24 724 787 HOH HOH . F 4 HOH B 25 725 758 HOH HOH . F 4 HOH B 26 726 707 HOH HOH . F 4 HOH B 27 727 715 HOH HOH . F 4 HOH B 28 728 731 HOH HOH . F 4 HOH B 29 729 721 HOH HOH . F 4 HOH B 30 730 815 HOH HOH . F 4 HOH B 31 731 742 HOH HOH . F 4 HOH B 32 732 765 HOH HOH . F 4 HOH B 33 733 710 HOH HOH . F 4 HOH B 34 734 779 HOH HOH . F 4 HOH B 35 735 713 HOH HOH . F 4 HOH B 36 736 734 HOH HOH . F 4 HOH B 37 737 749 HOH HOH . F 4 HOH B 38 738 818 HOH HOH . F 4 HOH B 39 739 768 HOH HOH . F 4 HOH B 40 740 769 HOH HOH . F 4 HOH B 41 741 786 HOH HOH . F 4 HOH B 42 742 708 HOH HOH . F 4 HOH B 43 743 756 HOH HOH . F 4 HOH B 44 744 723 HOH HOH . F 4 HOH B 45 745 827 HOH HOH . F 4 HOH B 46 746 797 HOH HOH . F 4 HOH B 47 747 747 HOH HOH . F 4 HOH B 48 748 753 HOH HOH . F 4 HOH B 49 749 748 HOH HOH . F 4 HOH B 50 750 718 HOH HOH . F 4 HOH B 51 751 725 HOH HOH . F 4 HOH B 52 752 711 HOH HOH . F 4 HOH B 53 753 780 HOH HOH . F 4 HOH B 54 754 704 HOH HOH . F 4 HOH B 55 755 772 HOH HOH . F 4 HOH B 56 756 810 HOH HOH . F 4 HOH B 57 757 755 HOH HOH . F 4 HOH B 58 758 762 HOH HOH . F 4 HOH B 59 759 766 HOH HOH . F 4 HOH B 60 760 807 HOH HOH . F 4 HOH B 61 761 719 HOH HOH . F 4 HOH B 62 762 735 HOH HOH . F 4 HOH B 63 763 790 HOH HOH . F 4 HOH B 64 764 746 HOH HOH . F 4 HOH B 65 765 720 HOH HOH . F 4 HOH B 66 766 767 HOH HOH . F 4 HOH B 67 767 806 HOH HOH . F 4 HOH B 68 768 787 HOH HOH . F 4 HOH B 69 769 754 HOH HOH . F 4 HOH B 70 770 736 HOH HOH . F 4 HOH B 71 771 760 HOH HOH . F 4 HOH B 72 772 744 HOH HOH . F 4 HOH B 73 773 764 HOH HOH . F 4 HOH B 74 774 783 HOH HOH . F 4 HOH B 75 775 776 HOH HOH . F 4 HOH B 76 776 759 HOH HOH . F 4 HOH B 77 777 775 HOH HOH . F 4 HOH B 78 778 801 HOH HOH . F 4 HOH B 79 779 739 HOH HOH . F 4 HOH B 80 780 792 HOH HOH . F 4 HOH B 81 781 743 HOH HOH . F 4 HOH B 82 782 751 HOH HOH . F 4 HOH B 83 783 773 HOH HOH . F 4 HOH B 84 784 740 HOH HOH . F 4 HOH B 85 785 761 HOH HOH . F 4 HOH B 86 786 752 HOH HOH . F 4 HOH B 87 787 800 HOH HOH . F 4 HOH B 88 788 769 HOH HOH . F 4 HOH B 89 789 826 HOH HOH . F 4 HOH B 90 790 777 HOH HOH . F 4 HOH B 91 791 737 HOH HOH . F 4 HOH B 92 792 808 HOH HOH . F 4 HOH B 93 793 728 HOH HOH . F 4 HOH B 94 794 724 HOH HOH . F 4 HOH B 95 795 763 HOH HOH . F 4 HOH B 96 796 809 HOH HOH . F 4 HOH B 97 797 794 HOH HOH . F 4 HOH B 98 798 814 HOH HOH . F 4 HOH B 99 799 771 HOH HOH . F 4 HOH B 100 800 832 HOH HOH . F 4 HOH B 101 801 782 HOH HOH . F 4 HOH B 102 802 820 HOH HOH . F 4 HOH B 103 803 784 HOH HOH . F 4 HOH B 104 804 778 HOH HOH . F 4 HOH B 105 805 803 HOH HOH . F 4 HOH B 106 806 825 HOH HOH . F 4 HOH B 107 807 811 HOH HOH . F 4 HOH B 108 808 821 HOH HOH . F 4 HOH B 109 809 785 HOH HOH . F 4 HOH B 110 810 789 HOH HOH . F 4 HOH B 111 811 788 HOH HOH . F 4 HOH B 112 812 823 HOH HOH . F 4 HOH B 113 813 813 HOH HOH . F 4 HOH B 114 814 798 HOH HOH . F 4 HOH B 115 815 817 HOH HOH . F 4 HOH B 116 816 774 HOH HOH . F 4 HOH B 117 817 819 HOH HOH . F 4 HOH B 118 818 793 HOH HOH . F 4 HOH B 119 819 812 HOH HOH . F 4 HOH B 120 820 805 HOH HOH . F 4 HOH B 121 821 745 HOH HOH . F 4 HOH B 122 822 828 HOH HOH . F 4 HOH B 123 823 816 HOH HOH . F 4 HOH B 124 824 829 HOH HOH . F 4 HOH B 125 825 831 HOH HOH . F 4 HOH B 126 826 830 HOH HOH . F 4 HOH B 127 827 834 HOH HOH . F 4 HOH B 128 828 824 HOH HOH . F 4 HOH B 129 829 833 HOH HOH . F 4 HOH B 130 830 804 HOH HOH . F 4 HOH B 131 831 835 HOH HOH . G 4 HOH A 1 701 733 HOH HOH . G 4 HOH A 2 702 740 HOH HOH . G 4 HOH A 3 703 731 HOH HOH . G 4 HOH A 4 704 777 HOH HOH . G 4 HOH A 5 705 707 HOH HOH . G 4 HOH A 6 706 703 HOH HOH . G 4 HOH A 7 707 720 HOH HOH . G 4 HOH A 8 708 716 HOH HOH . G 4 HOH A 9 709 702 HOH HOH . G 4 HOH A 10 710 723 HOH HOH . G 4 HOH A 11 711 724 HOH HOH . G 4 HOH A 12 712 729 HOH HOH . G 4 HOH A 13 713 721 HOH HOH . G 4 HOH A 14 714 722 HOH HOH . G 4 HOH A 15 715 735 HOH HOH . G 4 HOH A 16 716 710 HOH HOH . G 4 HOH A 17 717 766 HOH HOH . G 4 HOH A 18 718 726 HOH HOH . G 4 HOH A 19 719 705 HOH HOH . G 4 HOH A 20 720 713 HOH HOH . G 4 HOH A 21 721 757 HOH HOH . G 4 HOH A 22 722 754 HOH HOH . G 4 HOH A 23 723 718 HOH HOH . G 4 HOH A 24 724 708 HOH HOH . G 4 HOH A 25 725 732 HOH HOH . G 4 HOH A 26 726 726 HOH HOH . G 4 HOH A 27 727 791 HOH HOH . G 4 HOH A 28 728 730 HOH HOH . G 4 HOH A 29 729 804 HOH HOH . G 4 HOH A 30 730 781 HOH HOH . G 4 HOH A 31 731 738 HOH HOH . G 4 HOH A 32 732 752 HOH HOH . G 4 HOH A 33 733 714 HOH HOH . G 4 HOH A 34 734 722 HOH HOH . G 4 HOH A 35 735 780 HOH HOH . G 4 HOH A 36 736 711 HOH HOH . G 4 HOH A 37 737 773 HOH HOH . G 4 HOH A 38 738 709 HOH HOH . G 4 HOH A 39 739 728 HOH HOH . G 4 HOH A 40 740 712 HOH HOH . G 4 HOH A 41 741 759 HOH HOH . G 4 HOH A 42 742 748 HOH HOH . G 4 HOH A 43 743 774 HOH HOH . G 4 HOH A 44 744 742 HOH HOH . G 4 HOH A 45 745 727 HOH HOH . G 4 HOH A 46 746 779 HOH HOH . G 4 HOH A 47 747 717 HOH HOH . G 4 HOH A 48 748 771 HOH HOH . G 4 HOH A 49 749 797 HOH HOH . G 4 HOH A 50 750 701 HOH HOH . G 4 HOH A 51 751 790 HOH HOH . G 4 HOH A 52 752 725 HOH HOH . G 4 HOH A 53 753 756 HOH HOH . G 4 HOH A 54 754 706 HOH HOH . G 4 HOH A 55 755 741 HOH HOH . G 4 HOH A 56 756 736 HOH HOH . G 4 HOH A 57 757 719 HOH HOH . G 4 HOH A 58 758 744 HOH HOH . G 4 HOH A 59 759 793 HOH HOH . G 4 HOH A 60 760 782 HOH HOH . G 4 HOH A 61 761 778 HOH HOH . G 4 HOH A 62 762 776 HOH HOH . G 4 HOH A 63 763 755 HOH HOH . G 4 HOH A 64 764 743 HOH HOH . G 4 HOH A 65 765 767 HOH HOH . G 4 HOH A 66 766 745 HOH HOH . G 4 HOH A 67 767 734 HOH HOH . G 4 HOH A 68 768 737 HOH HOH . G 4 HOH A 69 769 809 HOH HOH . G 4 HOH A 70 770 746 HOH HOH . G 4 HOH A 71 771 758 HOH HOH . G 4 HOH A 72 772 802 HOH HOH . G 4 HOH A 73 773 811 HOH HOH . G 4 HOH A 74 774 750 HOH HOH . G 4 HOH A 75 775 796 HOH HOH . G 4 HOH A 76 776 763 HOH HOH . G 4 HOH A 77 777 703 HOH HOH . G 4 HOH A 78 778 757 HOH HOH . G 4 HOH A 79 779 781 HOH HOH . G 4 HOH A 80 780 762 HOH HOH . G 4 HOH A 81 781 715 HOH HOH . G 4 HOH A 82 782 753 HOH HOH . G 4 HOH A 83 783 806 HOH HOH . G 4 HOH A 84 784 784 HOH HOH . G 4 HOH A 85 785 765 HOH HOH . G 4 HOH A 86 786 786 HOH HOH . G 4 HOH A 87 787 783 HOH HOH . G 4 HOH A 88 788 772 HOH HOH . G 4 HOH A 89 789 739 HOH HOH . G 4 HOH A 90 790 761 HOH HOH . G 4 HOH A 91 791 789 HOH HOH . G 4 HOH A 92 792 768 HOH HOH . G 4 HOH A 93 793 795 HOH HOH . G 4 HOH A 94 794 800 HOH HOH . G 4 HOH A 95 795 796 HOH HOH . G 4 HOH A 96 796 798 HOH HOH . G 4 HOH A 97 797 749 HOH HOH . G 4 HOH A 98 798 775 HOH HOH . G 4 HOH A 99 799 751 HOH HOH . G 4 HOH A 100 800 747 HOH HOH . G 4 HOH A 101 801 794 HOH HOH . G 4 HOH A 102 802 770 HOH HOH . G 4 HOH A 103 803 810 HOH HOH . G 4 HOH A 104 804 822 HOH HOH . G 4 HOH A 105 805 785 HOH HOH . G 4 HOH A 106 806 788 HOH HOH . G 4 HOH A 107 807 792 HOH HOH . G 4 HOH A 108 808 760 HOH HOH . G 4 HOH A 109 809 801 HOH HOH . G 4 HOH A 110 810 802 HOH HOH . G 4 HOH A 111 811 799 HOH HOH . G 4 HOH A 112 812 807 HOH HOH . G 4 HOH A 113 813 803 HOH HOH . G 4 HOH A 114 814 808 HOH HOH . G 4 HOH A 115 815 812 HOH HOH . G 4 HOH A 116 816 805 HOH HOH . G 4 HOH A 117 817 836 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NTG . . . E 3 44.32 1.202 9.906 1 42.85 ? N1 NTG 602 A 1 HETATM 2 N N3 NTG . . . E 3 45.488 2.161 16.518 1 63.45 ? N3 NTG 602 A 1 HETATM 3 C C4 NTG . . . E 3 46.266 1.442 14.32 1 55.82 ? C4 NTG 602 A 1 HETATM 4 C C5 NTG . . . E 3 45.253 1.912 15.179 1 59.6 ? C5 NTG 602 A 1 HETATM 5 C C6 NTG . . . E 3 43.985 2.109 14.624 1 57.75 ? C6 NTG 602 A 1 HETATM 6 C C7 NTG . . . E 3 44.448 2.669 17.42 1 64.74 ? C7 NTG 602 A 1 HETATM 7 C C8 NTG . . . E 3 44.379 4.186 17.497 1 66.58 ? C8 NTG 602 A 1 HETATM 8 C C10 NTG . . . E 3 47.254 3.053 18.046 1 66.67 ? C10 NTG 602 A 1 HETATM 9 C C1 NTG . . . E 3 44.33 1.203 11.139 1 51.43 ? C1 NTG 602 A 1 HETATM 10 C C11 NTG . . . E 3 46.792 1.927 17.139 1 64.08 ? C11 NTG 602 A 1 HETATM 11 C C2 NTG . . . E 3 44.688 1.417 12.529 1 54.78 ? C2 NTG 602 A 1 HETATM 12 C C3 NTG . . . E 3 45.98 1.195 12.986 1 54.02 ? C3 NTG 602 A 1 HETATM 13 C C9 NTG . . . E 3 45.61 4.832 18.103 1 67.22 ? C9 NTG 602 A 1 HETATM 14 N N2 NTG . . . E 3 43.709 1.87 13.334 1 55.83 ? N2 NTG 602 A 1 HETATM 15 O O1 NTG . . . E 3 46.799 4.299 17.526 1 67.95 ? O1 NTG 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #