data_5QRD # _model_server_result.job_id B3Hx6Gx6yk32FZedHs1WXg _model_server_result.datetime_utc '2024-11-25 17:51:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qrd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":602}' # _entry.id 5QRD # _exptl.entry_id 5QRD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.306 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(2-methylsulfonylimidazol-1-yl)methyl]-1,3-thiazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.15 _cell.angle_gamma 90 _cell.entry_id 5QRD _cell.length_a 127.972 _cell.length_b 108.831 _cell.length_c 76.076 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H9 N3 O2 S2' _chem_comp.formula_weight 243.306 _chem_comp.id J4Q _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(2-methylsulfonylimidazol-1-yl)methyl]-1,3-thiazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 J4Q doub 173 n y N1 C3 J4Q sing 174 n y N3 C8 J4Q doub 175 n y C4 C3 J4Q doub 176 n y C4 N2 J4Q sing 177 n y C5 C6 J4Q sing 178 n n C5 N2 J4Q sing 179 n n C6 C7 J4Q doub 180 n y C7 S2 J4Q sing 181 n y C8 S2 J4Q sing 182 n y C1 S1 J4Q sing 183 n n S1 O1 J4Q doub 184 n n S1 O2 J4Q doub 185 n n S1 C2 J4Q sing 186 n n C2 N2 J4Q sing 187 n y C4 H2 J4Q sing 188 n n C5 H3 J4Q sing 189 n n C5 H4 J4Q sing 190 n n C7 H6 J4Q sing 191 n n C8 H8 J4Q sing 192 n n C1 H10 J4Q sing 193 n n C1 H11 J4Q sing 194 n n C1 H12 J4Q sing 195 n n C3 H13 J4Q sing 196 n n N3 C6 J4Q sing 197 n y # _atom_sites.entry_id 5QRD _atom_sites.fract_transf_matrix[1][1] 0.007814 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002713 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009189 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013914 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP B 1 601 601 PLP PLP . D 3 J4Q B 1 602 901 J4Q LIG . E 2 PLP A 1 601 601 PLP PLP . F 4 HOH B 1 701 702 HOH HOH . F 4 HOH B 2 702 799 HOH HOH . F 4 HOH B 3 703 732 HOH HOH . F 4 HOH B 4 704 717 HOH HOH . F 4 HOH B 5 705 815 HOH HOH . F 4 HOH B 6 706 758 HOH HOH . F 4 HOH B 7 707 714 HOH HOH . F 4 HOH B 8 708 709 HOH HOH . F 4 HOH B 9 709 795 HOH HOH . F 4 HOH B 10 710 701 HOH HOH . F 4 HOH B 11 711 765 HOH HOH . F 4 HOH B 12 712 712 HOH HOH . F 4 HOH B 13 713 727 HOH HOH . F 4 HOH B 14 714 725 HOH HOH . F 4 HOH B 15 715 791 HOH HOH . F 4 HOH B 16 716 762 HOH HOH . F 4 HOH B 17 717 768 HOH HOH . F 4 HOH B 18 718 729 HOH HOH . F 4 HOH B 19 719 704 HOH HOH . F 4 HOH B 20 720 773 HOH HOH . F 4 HOH B 21 721 731 HOH HOH . F 4 HOH B 22 722 706 HOH HOH . F 4 HOH B 23 723 713 HOH HOH . F 4 HOH B 24 724 797 HOH HOH . F 4 HOH B 25 725 769 HOH HOH . F 4 HOH B 26 726 726 HOH HOH . F 4 HOH B 27 727 716 HOH HOH . F 4 HOH B 28 728 741 HOH HOH . F 4 HOH B 29 729 748 HOH HOH . F 4 HOH B 30 730 711 HOH HOH . F 4 HOH B 31 731 715 HOH HOH . F 4 HOH B 32 732 712 HOH HOH . F 4 HOH B 33 733 728 HOH HOH . F 4 HOH B 34 734 733 HOH HOH . F 4 HOH B 35 735 772 HOH HOH . F 4 HOH B 36 736 756 HOH HOH . F 4 HOH B 37 737 708 HOH HOH . F 4 HOH B 38 738 779 HOH HOH . F 4 HOH B 39 739 719 HOH HOH . F 4 HOH B 40 740 736 HOH HOH . F 4 HOH B 41 741 764 HOH HOH . F 4 HOH B 42 742 755 HOH HOH . F 4 HOH B 43 743 801 HOH HOH . F 4 HOH B 44 744 724 HOH HOH . F 4 HOH B 45 745 730 HOH HOH . F 4 HOH B 46 746 742 HOH HOH . F 4 HOH B 47 747 721 HOH HOH . F 4 HOH B 48 748 786 HOH HOH . F 4 HOH B 49 749 806 HOH HOH . F 4 HOH B 50 750 720 HOH HOH . F 4 HOH B 51 751 723 HOH HOH . F 4 HOH B 52 752 760 HOH HOH . F 4 HOH B 53 753 767 HOH HOH . F 4 HOH B 54 754 718 HOH HOH . F 4 HOH B 55 755 790 HOH HOH . F 4 HOH B 56 756 780 HOH HOH . F 4 HOH B 57 757 787 HOH HOH . F 4 HOH B 58 758 710 HOH HOH . F 4 HOH B 59 759 744 HOH HOH . F 4 HOH B 60 760 783 HOH HOH . F 4 HOH B 61 761 787 HOH HOH . F 4 HOH B 62 762 749 HOH HOH . F 4 HOH B 63 763 750 HOH HOH . F 4 HOH B 64 764 754 HOH HOH . F 4 HOH B 65 765 766 HOH HOH . F 4 HOH B 66 766 810 HOH HOH . F 4 HOH B 67 767 747 HOH HOH . F 4 HOH B 68 768 746 HOH HOH . F 4 HOH B 69 769 735 HOH HOH . F 4 HOH B 70 770 740 HOH HOH . F 4 HOH B 71 771 753 HOH HOH . F 4 HOH B 72 772 807 HOH HOH . F 4 HOH B 73 773 739 HOH HOH . F 4 HOH B 74 774 826 HOH HOH . F 4 HOH B 75 775 734 HOH HOH . F 4 HOH B 76 776 745 HOH HOH . F 4 HOH B 77 777 775 HOH HOH . F 4 HOH B 78 778 764 HOH HOH . F 4 HOH B 79 779 769 HOH HOH . F 4 HOH B 80 780 771 HOH HOH . F 4 HOH B 81 781 778 HOH HOH . F 4 HOH B 82 782 808 HOH HOH . F 4 HOH B 83 783 759 HOH HOH . F 4 HOH B 84 784 743 HOH HOH . F 4 HOH B 85 785 751 HOH HOH . F 4 HOH B 86 786 770 HOH HOH . F 4 HOH B 87 787 792 HOH HOH . F 4 HOH B 88 788 761 HOH HOH . F 4 HOH B 89 789 782 HOH HOH . F 4 HOH B 90 790 763 HOH HOH . F 4 HOH B 91 791 785 HOH HOH . F 4 HOH B 92 792 809 HOH HOH . F 4 HOH B 93 793 803 HOH HOH . F 4 HOH B 94 794 800 HOH HOH . F 4 HOH B 95 795 737 HOH HOH . F 4 HOH B 96 796 752 HOH HOH . F 4 HOH B 97 797 820 HOH HOH . F 4 HOH B 98 798 789 HOH HOH . F 4 HOH B 99 799 812 HOH HOH . F 4 HOH B 100 800 747 HOH HOH . F 4 HOH B 101 801 784 HOH HOH . F 4 HOH B 102 802 798 HOH HOH . F 4 HOH B 103 803 813 HOH HOH . F 4 HOH B 104 804 777 HOH HOH . F 4 HOH B 105 805 802 HOH HOH . F 4 HOH B 106 806 827 HOH HOH . F 4 HOH B 107 807 811 HOH HOH . F 4 HOH B 108 808 788 HOH HOH . F 4 HOH B 109 809 825 HOH HOH . F 4 HOH B 110 810 774 HOH HOH . F 4 HOH B 111 811 814 HOH HOH . F 4 HOH B 112 812 705 HOH HOH . F 4 HOH B 113 813 816 HOH HOH . F 4 HOH B 114 814 824 HOH HOH . F 4 HOH B 115 815 819 HOH HOH . F 4 HOH B 116 816 831 HOH HOH . F 4 HOH B 117 817 828 HOH HOH . F 4 HOH B 118 818 823 HOH HOH . F 4 HOH B 119 819 805 HOH HOH . F 4 HOH B 120 820 793 HOH HOH . F 4 HOH B 121 821 821 HOH HOH . F 4 HOH B 122 822 794 HOH HOH . F 4 HOH B 123 823 817 HOH HOH . F 4 HOH B 124 824 834 HOH HOH . F 4 HOH B 125 825 818 HOH HOH . F 4 HOH B 126 826 830 HOH HOH . F 4 HOH B 127 827 833 HOH HOH . F 4 HOH B 128 828 832 HOH HOH . F 4 HOH B 129 829 804 HOH HOH . F 4 HOH B 130 830 835 HOH HOH . G 4 HOH A 1 701 748 HOH HOH . G 4 HOH A 2 702 731 HOH HOH . G 4 HOH A 3 703 716 HOH HOH . G 4 HOH A 4 704 710 HOH HOH . G 4 HOH A 5 705 757 HOH HOH . G 4 HOH A 6 706 723 HOH HOH . G 4 HOH A 7 707 802 HOH HOH . G 4 HOH A 8 708 703 HOH HOH . G 4 HOH A 9 709 779 HOH HOH . G 4 HOH A 10 710 713 HOH HOH . G 4 HOH A 11 711 742 HOH HOH . G 4 HOH A 12 712 759 HOH HOH . G 4 HOH A 13 713 733 HOH HOH . G 4 HOH A 14 714 729 HOH HOH . G 4 HOH A 15 715 707 HOH HOH . G 4 HOH A 16 716 714 HOH HOH . G 4 HOH A 17 717 711 HOH HOH . G 4 HOH A 18 718 702 HOH HOH . G 4 HOH A 19 719 780 HOH HOH . G 4 HOH A 20 720 744 HOH HOH . G 4 HOH A 21 721 704 HOH HOH . G 4 HOH A 22 722 735 HOH HOH . G 4 HOH A 23 723 720 HOH HOH . G 4 HOH A 24 724 725 HOH HOH . G 4 HOH A 25 725 707 HOH HOH . G 4 HOH A 26 726 721 HOH HOH . G 4 HOH A 27 727 722 HOH HOH . G 4 HOH A 28 728 756 HOH HOH . G 4 HOH A 29 729 791 HOH HOH . G 4 HOH A 30 730 718 HOH HOH . G 4 HOH A 31 731 722 HOH HOH . G 4 HOH A 32 732 738 HOH HOH . G 4 HOH A 33 733 703 HOH HOH . G 4 HOH A 34 734 705 HOH HOH . G 4 HOH A 35 735 809 HOH HOH . G 4 HOH A 36 736 783 HOH HOH . G 4 HOH A 37 737 804 HOH HOH . G 4 HOH A 38 738 740 HOH HOH . G 4 HOH A 39 739 734 HOH HOH . G 4 HOH A 40 740 737 HOH HOH . G 4 HOH A 41 741 724 HOH HOH . G 4 HOH A 42 742 701 HOH HOH . G 4 HOH A 43 743 732 HOH HOH . G 4 HOH A 44 744 777 HOH HOH . G 4 HOH A 45 745 709 HOH HOH . G 4 HOH A 46 746 774 HOH HOH . G 4 HOH A 47 747 778 HOH HOH . G 4 HOH A 48 748 728 HOH HOH . G 4 HOH A 49 749 727 HOH HOH . G 4 HOH A 50 750 717 HOH HOH . G 4 HOH A 51 751 739 HOH HOH . G 4 HOH A 52 752 773 HOH HOH . G 4 HOH A 53 753 741 HOH HOH . G 4 HOH A 54 754 752 HOH HOH . G 4 HOH A 55 755 726 HOH HOH . G 4 HOH A 56 756 719 HOH HOH . G 4 HOH A 57 757 706 HOH HOH . G 4 HOH A 58 758 766 HOH HOH . G 4 HOH A 59 759 708 HOH HOH . G 4 HOH A 60 760 796 HOH HOH . G 4 HOH A 61 761 772 HOH HOH . G 4 HOH A 62 762 758 HOH HOH . G 4 HOH A 63 763 797 HOH HOH . G 4 HOH A 64 764 760 HOH HOH . G 4 HOH A 65 765 736 HOH HOH . G 4 HOH A 66 766 755 HOH HOH . G 4 HOH A 67 767 762 HOH HOH . G 4 HOH A 68 768 776 HOH HOH . G 4 HOH A 69 769 746 HOH HOH . G 4 HOH A 70 770 753 HOH HOH . G 4 HOH A 71 771 790 HOH HOH . G 4 HOH A 72 772 788 HOH HOH . G 4 HOH A 73 773 767 HOH HOH . G 4 HOH A 74 774 738 HOH HOH . G 4 HOH A 75 775 763 HOH HOH . G 4 HOH A 76 776 730 HOH HOH . G 4 HOH A 77 777 750 HOH HOH . G 4 HOH A 78 778 795 HOH HOH . G 4 HOH A 79 779 757 HOH HOH . G 4 HOH A 80 780 810 HOH HOH . G 4 HOH A 81 781 745 HOH HOH . G 4 HOH A 82 782 765 HOH HOH . G 4 HOH A 83 783 781 HOH HOH . G 4 HOH A 84 784 770 HOH HOH . G 4 HOH A 85 785 811 HOH HOH . G 4 HOH A 86 786 751 HOH HOH . G 4 HOH A 87 787 776 HOH HOH . G 4 HOH A 88 788 806 HOH HOH . G 4 HOH A 89 789 798 HOH HOH . G 4 HOH A 90 790 793 HOH HOH . G 4 HOH A 91 791 789 HOH HOH . G 4 HOH A 92 792 794 HOH HOH . G 4 HOH A 93 793 715 HOH HOH . G 4 HOH A 94 794 768 HOH HOH . G 4 HOH A 95 795 784 HOH HOH . G 4 HOH A 96 796 754 HOH HOH . G 4 HOH A 97 797 775 HOH HOH . G 4 HOH A 98 798 792 HOH HOH . G 4 HOH A 99 799 782 HOH HOH . G 4 HOH A 100 800 800 HOH HOH . G 4 HOH A 101 801 749 HOH HOH . G 4 HOH A 102 802 786 HOH HOH . G 4 HOH A 103 803 796 HOH HOH . G 4 HOH A 104 804 785 HOH HOH . G 4 HOH A 105 805 743 HOH HOH . G 4 HOH A 106 806 761 HOH HOH . G 4 HOH A 107 807 801 HOH HOH . G 4 HOH A 108 808 829 HOH HOH . G 4 HOH A 109 809 822 HOH HOH . G 4 HOH A 110 810 799 HOH HOH . G 4 HOH A 111 811 807 HOH HOH . G 4 HOH A 112 812 805 HOH HOH . G 4 HOH A 113 813 771 HOH HOH . G 4 HOH A 114 814 781 HOH HOH . G 4 HOH A 115 815 812 HOH HOH . G 4 HOH A 116 816 803 HOH HOH . G 4 HOH A 117 817 836 HOH HOH . G 4 HOH A 118 818 808 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J4Q . . . D 3 38.035 -41.565 13.226 0.74 41.99 ? N1 J4Q 602 B 1 HETATM 2 N N3 J4Q . . . D 3 40.357 -46.078 13.741 0.74 41.35 ? N3 J4Q 602 B 1 HETATM 3 C C4 J4Q . . . D 3 37.624 -43.219 14.682 0.74 41.75 ? C4 J4Q 602 B 1 HETATM 4 C C5 J4Q . . . D 3 38.139 -45.207 13.196 0.74 41.76 ? C5 J4Q 602 B 1 HETATM 5 C C6 J4Q . . . D 3 39.105 -45.879 14.108 0.74 41.36 ? C6 J4Q 602 B 1 HETATM 6 C C7 J4Q . . . D 3 38.821 -46.33 15.344 0.74 38.95 ? C7 J4Q 602 B 1 HETATM 7 C C8 J4Q . . . D 3 41.004 -46.754 14.637 0.74 39.81 ? C8 J4Q 602 B 1 HETATM 8 C C1 J4Q . . . D 3 38.729 -41.336 10.142 0.74 52.79 ? C1 J4Q 602 B 1 HETATM 9 S S1 J4Q . . . D 3 38.767 -42.932 10.867 0.74 52.02 ? S1 J4Q 602 B 1 HETATM 10 O O1 J4Q . . . D 3 40.12 -43.411 10.876 0.74 56.4 ? O1 J4Q 602 B 1 HETATM 11 O O2 J4Q . . . D 3 37.779 -43.749 10.212 0.74 58.51 ? O2 J4Q 602 B 1 HETATM 12 C C2 J4Q . . . D 3 38.256 -42.743 12.595 0.74 45.65 ? C2 J4Q 602 B 1 HETATM 13 C C3 J4Q . . . D 3 37.638 -41.881 14.51 0.74 38.68 ? C3 J4Q 602 B 1 HETATM 14 N N2 J4Q . . . D 3 38.024 -43.779 13.47 0.74 41.99 ? N2 J4Q 602 B 1 HETATM 15 S S2 J4Q . . . D 3 40.122 -47.131 16.05 0.74 41.1 ? S2 J4Q 602 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #