data_5QRI # _model_server_result.job_id RQjlhQAec1P2jooycD0Z5w _model_server_result.datetime_utc '2024-11-12 21:35:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 5QRI # _exptl.entry_id 5QRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.349 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-(propan-2-yl)piperazin-1-yl](thiophen-2-yl)methanone' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QRI _cell.length_a 59.957 _cell.length_b 59.957 _cell.length_c 110.153 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 100 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 A SG CYS 83 A CYS 122 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc3 A SG CYS 83 A CYS 122 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc4 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc5 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc6 A OE1 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc7 A OE2 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc8 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc9 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc10 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc11 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc12 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc13 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc14 B CD CD . A CD 301 1_555 H O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc15 B CD CD . A CD 301 1_555 H O HOH . A HOH 454 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc16 C CD CD . A CD 302 1_555 H O HOH . A HOH 451 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc17 C CD CD . A CD 302 1_555 H O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc18 D CD CD . A CD 303 1_555 H O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc19 D CD CD . A CD 303 1_555 H O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc20 E CD CD . A CD 304 1_555 H O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc21 E CD CD . A CD 304 1_555 H O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc22 E CD CD . A CD 304 1_555 H O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc23 F CD CD . A CD 305 1_555 H O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc24 F CD CD . A CD 305 1_555 H O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? # _chem_comp.formula 'C12 H18 N2 O S' _chem_comp.formula_weight 238.349 _chem_comp.id NUY _chem_comp.mon_nstd_flag . _chem_comp.name '[4-(propan-2-yl)piperazin-1-yl](thiophen-2-yl)methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 NUY sing 237 n y C11 C12 NUY doub 238 n y C10 C9 NUY doub 239 n y O1 C8 NUY doub 240 n n C12 S1 NUY sing 241 n y C9 C8 NUY sing 242 n n C9 S1 NUY sing 243 n y C8 N2 NUY sing 244 n n N2 C6 NUY sing 245 n n N2 C5 NUY sing 246 n n C6 C7 NUY sing 247 n n C5 C4 NUY sing 248 n n C7 N1 NUY sing 249 n n C4 N1 NUY sing 250 n n N1 C2 NUY sing 251 n n C2 C1 NUY sing 252 n n C2 C3 NUY sing 253 n n C4 H2 NUY sing 254 n n C4 H3 NUY sing 255 n n C5 H4 NUY sing 256 n n C5 H5 NUY sing 257 n n C6 H6 NUY sing 258 n n C6 H7 NUY sing 259 n n C7 H8 NUY sing 260 n n C7 H9 NUY sing 261 n n C10 H10 NUY sing 262 n n C1 H11 NUY sing 263 n n C1 H12 NUY sing 264 n n C1 H13 NUY sing 265 n n C11 H14 NUY sing 266 n n C12 H15 NUY sing 267 n n C2 H16 NUY sing 268 n n C3 H17 NUY sing 269 n n C3 H18 NUY sing 270 n n C3 H19 NUY sing 271 n n # _atom_sites.entry_id 5QRI _atom_sites.fract_transf_matrix[1][1] 0.016679 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009078 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 301 1 CD CD . C 2 CD A 1 302 2 CD CD . D 2 CD A 1 303 3 CD CD . E 2 CD A 1 304 4 CD CD . F 2 CD A 1 305 5 CD CD . G 3 NUY A 1 306 1 NUY LIG . H 4 HOH A 1 401 45 HOH HOH . H 4 HOH A 2 402 68 HOH HOH . H 4 HOH A 3 403 48 HOH HOH . H 4 HOH A 4 404 53 HOH HOH . H 4 HOH A 5 405 79 HOH HOH . H 4 HOH A 6 406 61 HOH HOH . H 4 HOH A 7 407 58 HOH HOH . H 4 HOH A 8 408 16 HOH HOH . H 4 HOH A 9 409 54 HOH HOH . H 4 HOH A 10 410 21 HOH HOH . H 4 HOH A 11 411 52 HOH HOH . H 4 HOH A 12 412 71 HOH HOH . H 4 HOH A 13 413 14 HOH HOH . H 4 HOH A 14 414 44 HOH HOH . H 4 HOH A 15 415 24 HOH HOH . H 4 HOH A 16 416 41 HOH HOH . H 4 HOH A 17 417 50 HOH HOH . H 4 HOH A 18 418 52 HOH HOH . H 4 HOH A 19 419 51 HOH HOH . H 4 HOH A 20 420 32 HOH HOH . H 4 HOH A 21 421 70 HOH HOH . H 4 HOH A 22 422 45 HOH HOH . H 4 HOH A 23 423 6 HOH HOH . H 4 HOH A 24 424 4 HOH HOH . H 4 HOH A 25 425 33 HOH HOH . H 4 HOH A 26 426 3 HOH HOH . H 4 HOH A 27 427 55 HOH HOH . H 4 HOH A 28 428 1 HOH HOH . H 4 HOH A 29 429 31 HOH HOH . H 4 HOH A 30 430 47 HOH HOH . H 4 HOH A 31 431 75 HOH HOH . H 4 HOH A 32 432 17 HOH HOH . H 4 HOH A 33 433 63 HOH HOH . H 4 HOH A 34 434 69 HOH HOH . H 4 HOH A 35 435 10 HOH HOH . H 4 HOH A 36 436 60 HOH HOH . H 4 HOH A 37 437 49 HOH HOH . H 4 HOH A 38 438 8 HOH HOH . H 4 HOH A 39 439 14 HOH HOH . H 4 HOH A 40 440 67 HOH HOH . H 4 HOH A 41 441 73 HOH HOH . H 4 HOH A 42 442 8 HOH HOH . H 4 HOH A 43 443 28 HOH HOH . H 4 HOH A 44 444 56 HOH HOH . H 4 HOH A 45 445 66 HOH HOH . H 4 HOH A 46 446 64 HOH HOH . H 4 HOH A 47 447 46 HOH HOH . H 4 HOH A 48 448 12 HOH HOH . H 4 HOH A 49 449 57 HOH HOH . H 4 HOH A 50 450 2 HOH HOH . H 4 HOH A 51 451 4 HOH HOH . H 4 HOH A 52 452 18 HOH HOH . H 4 HOH A 53 453 11 HOH HOH . H 4 HOH A 54 454 1 HOH HOH . H 4 HOH A 55 455 77 HOH HOH . H 4 HOH A 56 456 15 HOH HOH . H 4 HOH A 57 457 30 HOH HOH . H 4 HOH A 58 458 23 HOH HOH . H 4 HOH A 59 459 6 HOH HOH . H 4 HOH A 60 460 65 HOH HOH . H 4 HOH A 61 461 7 HOH HOH . H 4 HOH A 62 462 5 HOH HOH . H 4 HOH A 63 463 3 HOH HOH . H 4 HOH A 64 464 62 HOH HOH . H 4 HOH A 65 465 72 HOH HOH . H 4 HOH A 66 466 10 HOH HOH . H 4 HOH A 67 467 78 HOH HOH . H 4 HOH A 68 468 43 HOH HOH . H 4 HOH A 69 469 16 HOH HOH . H 4 HOH A 70 470 18 HOH HOH . H 4 HOH A 71 471 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NUY . . . G 3 27.204 8.668 23.121 1 98.64 ? N1 NUY 306 A 1 HETATM 2 C C4 NUY . . . G 3 26.914 7.209 23.432 1 98.14 ? C4 NUY 306 A 1 HETATM 3 C C5 NUY . . . G 3 27.07 6.324 22.15 1 93.83 ? C5 NUY 306 A 1 HETATM 4 C C6 NUY . . . G 3 29.203 7.586 21.977 1 95.09 ? C6 NUY 306 A 1 HETATM 5 C C7 NUY . . . G 3 28.236 8.827 22.003 1 96.81 ? C7 NUY 306 A 1 HETATM 6 C C8 NUY . . . G 3 29.139 5.086 21.245 1 88.25 ? C8 NUY 306 A 1 HETATM 7 C C10 NUY . . . G 3 31.653 4.85 20.94 1 85.03 ? C10 NUY 306 A 1 HETATM 8 C C1 NUY . . . G 3 26.159 10.789 23.927 1 96.76 ? C1 NUY 306 A 1 HETATM 9 C C11 NUY . . . G 3 32.681 4.918 19.956 1 80.16 ? C11 NUY 306 A 1 HETATM 10 C C12 NUY . . . G 3 32.183 5.232 18.765 1 76.57 ? C12 NUY 306 A 1 HETATM 11 C C2 NUY . . . G 3 25.953 9.552 23.022 1 97.06 ? C2 NUY 306 A 1 HETATM 12 C C3 NUY . . . G 3 25.49 10.007 21.614 1 95.29 ? C3 NUY 306 A 1 HETATM 13 C C9 NUY . . . G 3 30.418 5.119 20.445 1 84.27 ? C9 NUY 306 A 1 HETATM 14 N N2 NUY . . . G 3 28.477 6.33 21.619 1 91.95 ? N2 NUY 306 A 1 HETATM 15 O O1 NUY . . . G 3 28.664 3.985 21.582 1 74.79 ? O1 NUY 306 A 1 HETATM 16 S S1 NUY . . . G 3 30.523 5.449 18.795 1 79.71 ? S1 NUY 306 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #