data_5QRI
#
_model_server_result.job_id            BDSnbKGH_Tx3u5ZVYzCWeg 
_model_server_result.datetime_utc      '2024-11-29 02:10:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qri 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    5QRI 
#
_exptl.entry_id    5QRI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.349 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[4-(propan-2-yl)piperazin-1-yl](thiophen-2-yl)methanone' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5QRI 
_cell.length_a            59.957 
_cell.length_b            59.957 
_cell.length_c            110.153 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QRI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 100 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc2 A SG CYS 83 A CYS 122 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc3 A SG CYS 83 A CYS 122 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc4 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc5 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc6 A OE1 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc7 A OE2 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc8 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc9 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc10 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc11 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc12 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc13 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc14 B CD CD . A CD 301 1_555 H O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc15 B CD CD . A CD 301 1_555 H O HOH . A HOH 454 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc16 C CD CD . A CD 302 1_555 H O HOH . A HOH 451 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc17 C CD CD . A CD 302 1_555 H O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc18 D CD CD . A CD 303 1_555 H O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc19 D CD CD . A CD 303 1_555 H O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? 
metalc ? metalc20 E CD CD . A CD 304 1_555 H O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc21 E CD CD . A CD 304 1_555 H O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc22 E CD CD . A CD 304 1_555 H O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc23 F CD CD . A CD 305 1_555 H O HOH . A HOH 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc24 F CD CD . A CD 305 1_555 H O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
#
_chem_comp.formula           'C12 H18 N2 O S' 
_chem_comp.formula_weight    238.349 
_chem_comp.id                NUY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[4-(propan-2-yl)piperazin-1-yl](thiophen-2-yl)methanone' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C10 NUY sing 237 n y 
C11 C12 NUY doub 238 n y 
C10 C9 NUY doub 239 n y 
O1 C8 NUY doub 240 n n 
C12 S1 NUY sing 241 n y 
C9 C8 NUY sing 242 n n 
C9 S1 NUY sing 243 n y 
C8 N2 NUY sing 244 n n 
N2 C6 NUY sing 245 n n 
N2 C5 NUY sing 246 n n 
C6 C7 NUY sing 247 n n 
C5 C4 NUY sing 248 n n 
C7 N1 NUY sing 249 n n 
C4 N1 NUY sing 250 n n 
N1 C2 NUY sing 251 n n 
C2 C1 NUY sing 252 n n 
C2 C3 NUY sing 253 n n 
C4 H2 NUY sing 254 n n 
C4 H3 NUY sing 255 n n 
C5 H4 NUY sing 256 n n 
C5 H5 NUY sing 257 n n 
C6 H6 NUY sing 258 n n 
C6 H7 NUY sing 259 n n 
C7 H8 NUY sing 260 n n 
C7 H9 NUY sing 261 n n 
C10 H10 NUY sing 262 n n 
C1 H11 NUY sing 263 n n 
C1 H12 NUY sing 264 n n 
C1 H13 NUY sing 265 n n 
C11 H14 NUY sing 266 n n 
C12 H15 NUY sing 267 n n 
C2 H16 NUY sing 268 n n 
C3 H17 NUY sing 269 n n 
C3 H18 NUY sing 270 n n 
C3 H19 NUY sing 271 n n 
#
_atom_sites.entry_id                     5QRI 
_atom_sites.fract_transf_matrix[1][1]    0.016679 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016679 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009078 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 301 1 CD CD . 
C 2 CD A 1 302 2 CD CD . 
D 2 CD A 1 303 3 CD CD . 
E 2 CD A 1 304 4 CD CD . 
F 2 CD A 1 305 5 CD CD . 
G 3 NUY A 1 306 1 NUY LIG . 
H 4 HOH A 1 401 45 HOH HOH . 
H 4 HOH A 2 402 68 HOH HOH . 
H 4 HOH A 3 403 48 HOH HOH . 
H 4 HOH A 4 404 53 HOH HOH . 
H 4 HOH A 5 405 79 HOH HOH . 
H 4 HOH A 6 406 61 HOH HOH . 
H 4 HOH A 7 407 58 HOH HOH . 
H 4 HOH A 8 408 16 HOH HOH . 
H 4 HOH A 9 409 54 HOH HOH . 
H 4 HOH A 10 410 21 HOH HOH . 
H 4 HOH A 11 411 52 HOH HOH . 
H 4 HOH A 12 412 71 HOH HOH . 
H 4 HOH A 13 413 14 HOH HOH . 
H 4 HOH A 14 414 44 HOH HOH . 
H 4 HOH A 15 415 24 HOH HOH . 
H 4 HOH A 16 416 41 HOH HOH . 
H 4 HOH A 17 417 50 HOH HOH . 
H 4 HOH A 18 418 52 HOH HOH . 
H 4 HOH A 19 419 51 HOH HOH . 
H 4 HOH A 20 420 32 HOH HOH . 
H 4 HOH A 21 421 70 HOH HOH . 
H 4 HOH A 22 422 45 HOH HOH . 
H 4 HOH A 23 423 6 HOH HOH . 
H 4 HOH A 24 424 4 HOH HOH . 
H 4 HOH A 25 425 33 HOH HOH . 
H 4 HOH A 26 426 3 HOH HOH . 
H 4 HOH A 27 427 55 HOH HOH . 
H 4 HOH A 28 428 1 HOH HOH . 
H 4 HOH A 29 429 31 HOH HOH . 
H 4 HOH A 30 430 47 HOH HOH . 
H 4 HOH A 31 431 75 HOH HOH . 
H 4 HOH A 32 432 17 HOH HOH . 
H 4 HOH A 33 433 63 HOH HOH . 
H 4 HOH A 34 434 69 HOH HOH . 
H 4 HOH A 35 435 10 HOH HOH . 
H 4 HOH A 36 436 60 HOH HOH . 
H 4 HOH A 37 437 49 HOH HOH . 
H 4 HOH A 38 438 8 HOH HOH . 
H 4 HOH A 39 439 14 HOH HOH . 
H 4 HOH A 40 440 67 HOH HOH . 
H 4 HOH A 41 441 73 HOH HOH . 
H 4 HOH A 42 442 8 HOH HOH . 
H 4 HOH A 43 443 28 HOH HOH . 
H 4 HOH A 44 444 56 HOH HOH . 
H 4 HOH A 45 445 66 HOH HOH . 
H 4 HOH A 46 446 64 HOH HOH . 
H 4 HOH A 47 447 46 HOH HOH . 
H 4 HOH A 48 448 12 HOH HOH . 
H 4 HOH A 49 449 57 HOH HOH . 
H 4 HOH A 50 450 2 HOH HOH . 
H 4 HOH A 51 451 4 HOH HOH . 
H 4 HOH A 52 452 18 HOH HOH . 
H 4 HOH A 53 453 11 HOH HOH . 
H 4 HOH A 54 454 1 HOH HOH . 
H 4 HOH A 55 455 77 HOH HOH . 
H 4 HOH A 56 456 15 HOH HOH . 
H 4 HOH A 57 457 30 HOH HOH . 
H 4 HOH A 58 458 23 HOH HOH . 
H 4 HOH A 59 459 6 HOH HOH . 
H 4 HOH A 60 460 65 HOH HOH . 
H 4 HOH A 61 461 7 HOH HOH . 
H 4 HOH A 62 462 5 HOH HOH . 
H 4 HOH A 63 463 3 HOH HOH . 
H 4 HOH A 64 464 62 HOH HOH . 
H 4 HOH A 65 465 72 HOH HOH . 
H 4 HOH A 66 466 10 HOH HOH . 
H 4 HOH A 67 467 78 HOH HOH . 
H 4 HOH A 68 468 43 HOH HOH . 
H 4 HOH A 69 469 16 HOH HOH . 
H 4 HOH A 70 470 18 HOH HOH . 
H 4 HOH A 71 471 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NUY . . . G 3 27.204 8.668 23.121 1 98.64 ? N1 NUY 306 A 1 
HETATM 2 C C4 NUY . . . G 3 26.914 7.209 23.432 1 98.14 ? C4 NUY 306 A 1 
HETATM 3 C C5 NUY . . . G 3 27.07 6.324 22.15 1 93.83 ? C5 NUY 306 A 1 
HETATM 4 C C6 NUY . . . G 3 29.203 7.586 21.977 1 95.09 ? C6 NUY 306 A 1 
HETATM 5 C C7 NUY . . . G 3 28.236 8.827 22.003 1 96.81 ? C7 NUY 306 A 1 
HETATM 6 C C8 NUY . . . G 3 29.139 5.086 21.245 1 88.25 ? C8 NUY 306 A 1 
HETATM 7 C C10 NUY . . . G 3 31.653 4.85 20.94 1 85.03 ? C10 NUY 306 A 1 
HETATM 8 C C1 NUY . . . G 3 26.159 10.789 23.927 1 96.76 ? C1 NUY 306 A 1 
HETATM 9 C C11 NUY . . . G 3 32.681 4.918 19.956 1 80.16 ? C11 NUY 306 A 1 
HETATM 10 C C12 NUY . . . G 3 32.183 5.232 18.765 1 76.57 ? C12 NUY 306 A 1 
HETATM 11 C C2 NUY . . . G 3 25.953 9.552 23.022 1 97.06 ? C2 NUY 306 A 1 
HETATM 12 C C3 NUY . . . G 3 25.49 10.007 21.614 1 95.29 ? C3 NUY 306 A 1 
HETATM 13 C C9 NUY . . . G 3 30.418 5.119 20.445 1 84.27 ? C9 NUY 306 A 1 
HETATM 14 N N2 NUY . . . G 3 28.477 6.33 21.619 1 91.95 ? N2 NUY 306 A 1 
HETATM 15 O O1 NUY . . . G 3 28.664 3.985 21.582 1 74.79 ? O1 NUY 306 A 1 
HETATM 16 S S1 NUY . . . G 3 30.523 5.449 18.795 1 79.71 ? S1 NUY 306 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           1253 
_model_server_stats.encode_time_ms          23 
_model_server_stats.element_count           16 
#