data_5QRL
#
_model_server_result.job_id            6bq7THtrwikMAVMRW_2Rfg 
_model_server_result.datetime_utc      '2024-11-01 15:25:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qrl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    5QRL 
#
_exptl.entry_id    5QRL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              204.268 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(6-methylpyridin-3-yl)methyl]cyclobutanecarboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5QRL 
_cell.length_a            60.104 
_cell.length_b            60.104 
_cell.length_c            110.242 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QRL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 100 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc2 A SG CYS 83 A CYS 122 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc3 A SG CYS 83 A CYS 122 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc4 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc5 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc6 A OE1 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? 
metalc ? metalc7 A OE2 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? 
metalc ? metalc8 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc9 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc10 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc11 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc12 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc13 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc14 B CD CD . A CD 301 1_555 H O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc15 B CD CD . A CD 301 1_555 H O HOH . A HOH 437 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc16 C CD CD . A CD 302 1_555 H O HOH . A HOH 454 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc17 C CD CD . A CD 302 1_555 H O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc18 D CD CD . A CD 303 1_555 H O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc19 D CD CD . A CD 303 1_555 H O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc20 E CD CD . A CD 304 1_555 H O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc21 E CD CD . A CD 304 1_555 H O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc22 E CD CD . A CD 304 1_555 H O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc23 F CD CD . A CD 305 1_555 H O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc24 F CD CD . A CD 305 1_555 H O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc25 F CD CD . A CD 305 1_555 H O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? 
#
_chem_comp.formula           'C12 H16 N2 O' 
_chem_comp.formula_weight    204.268 
_chem_comp.id                NWY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(6-methylpyridin-3-yl)methyl]cyclobutanecarboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C8 C9 NWY sing 237 n n 
C8 C7 NWY sing 238 n n 
C9 C10 NWY sing 239 n n 
C7 C10 NWY sing 240 n n 
C7 C6 NWY sing 241 n n 
C C1 NWY sing 242 n n 
C6 O NWY doub 243 n n 
C6 N NWY sing 244 n n 
N1 C1 NWY doub 245 n y 
N1 C11 NWY sing 246 n y 
C1 C2 NWY sing 247 n y 
C11 C4 NWY doub 248 n y 
N C5 NWY sing 249 n n 
C2 C3 NWY doub 250 n y 
C4 C3 NWY sing 251 n y 
C4 C5 NWY sing 252 n n 
C5 H1 NWY sing 253 n n 
C5 H2 NWY sing 254 n n 
C7 H3 NWY sing 255 n n 
C8 H4 NWY sing 256 n n 
C8 H5 NWY sing 257 n n 
C10 H6 NWY sing 258 n n 
C10 H7 NWY sing 259 n n 
N H8 NWY sing 260 n n 
C H9 NWY sing 261 n n 
C H10 NWY sing 262 n n 
C H11 NWY sing 263 n n 
C11 H12 NWY sing 264 n n 
C2 H13 NWY sing 265 n n 
C3 H14 NWY sing 266 n n 
C9 H15 NWY sing 267 n n 
C9 H16 NWY sing 268 n n 
#
_atom_sites.entry_id                     5QRL 
_atom_sites.fract_transf_matrix[1][1]    0.016638 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016638 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009071 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 301 1 CD CD . 
C 2 CD A 1 302 2 CD CD . 
D 2 CD A 1 303 3 CD CD . 
E 2 CD A 1 304 4 CD CD . 
F 2 CD A 1 305 5 CD CD . 
G 3 NWY A 1 306 1 NWY LIG . 
H 4 HOH A 1 401 61 HOH HOH . 
H 4 HOH A 2 402 53 HOH HOH . 
H 4 HOH A 3 403 79 HOH HOH . 
H 4 HOH A 4 404 21 HOH HOH . 
H 4 HOH A 5 405 48 HOH HOH . 
H 4 HOH A 6 406 60 HOH HOH . 
H 4 HOH A 7 407 58 HOH HOH . 
H 4 HOH A 8 408 10 HOH HOH . 
H 4 HOH A 9 409 24 HOH HOH . 
H 4 HOH A 10 410 68 HOH HOH . 
H 4 HOH A 11 411 54 HOH HOH . 
H 4 HOH A 12 412 44 HOH HOH . 
H 4 HOH A 13 413 52 HOH HOH . 
H 4 HOH A 14 414 41 HOH HOH . 
H 4 HOH A 15 415 70 HOH HOH . 
H 4 HOH A 16 416 16 HOH HOH . 
H 4 HOH A 17 417 14 HOH HOH . 
H 4 HOH A 18 418 4 HOH HOH . 
H 4 HOH A 19 419 50 HOH HOH . 
H 4 HOH A 20 420 51 HOH HOH . 
H 4 HOH A 21 421 71 HOH HOH . 
H 4 HOH A 22 422 52 HOH HOH . 
H 4 HOH A 23 423 45 HOH HOH . 
H 4 HOH A 24 424 31 HOH HOH . 
H 4 HOH A 25 425 17 HOH HOH . 
H 4 HOH A 26 426 67 HOH HOH . 
H 4 HOH A 27 427 33 HOH HOH . 
H 4 HOH A 28 428 47 HOH HOH . 
H 4 HOH A 29 429 1 HOH HOH . 
H 4 HOH A 30 430 30 HOH HOH . 
H 4 HOH A 31 431 6 HOH HOH . 
H 4 HOH A 32 432 56 HOH HOH . 
H 4 HOH A 33 433 49 HOH HOH . 
H 4 HOH A 34 434 69 HOH HOH . 
H 4 HOH A 35 435 45 HOH HOH . 
H 4 HOH A 36 436 75 HOH HOH . 
H 4 HOH A 37 437 1 HOH HOH . 
H 4 HOH A 38 438 73 HOH HOH . 
H 4 HOH A 39 439 8 HOH HOH . 
H 4 HOH A 40 440 57 HOH HOH . 
H 4 HOH A 41 441 18 HOH HOH . 
H 4 HOH A 42 442 66 HOH HOH . 
H 4 HOH A 43 443 55 HOH HOH . 
H 4 HOH A 44 444 63 HOH HOH . 
H 4 HOH A 45 445 14 HOH HOH . 
H 4 HOH A 46 446 8 HOH HOH . 
H 4 HOH A 47 447 28 HOH HOH . 
H 4 HOH A 48 448 64 HOH HOH . 
H 4 HOH A 49 449 32 HOH HOH . 
H 4 HOH A 50 450 23 HOH HOH . 
H 4 HOH A 51 451 46 HOH HOH . 
H 4 HOH A 52 452 2 HOH HOH . 
H 4 HOH A 53 453 12 HOH HOH . 
H 4 HOH A 54 454 4 HOH HOH . 
H 4 HOH A 55 455 11 HOH HOH . 
H 4 HOH A 56 456 15 HOH HOH . 
H 4 HOH A 57 457 77 HOH HOH . 
H 4 HOH A 58 458 65 HOH HOH . 
H 4 HOH A 59 459 6 HOH HOH . 
H 4 HOH A 60 460 7 HOH HOH . 
H 4 HOH A 61 461 72 HOH HOH . 
H 4 HOH A 62 462 3 HOH HOH . 
H 4 HOH A 63 463 5 HOH HOH . 
H 4 HOH A 64 464 3 HOH HOH . 
H 4 HOH A 65 465 62 HOH HOH . 
H 4 HOH A 66 466 10 HOH HOH . 
H 4 HOH A 67 467 78 HOH HOH . 
H 4 HOH A 68 468 43 HOH HOH . 
H 4 HOH A 69 469 16 HOH HOH . 
H 4 HOH A 70 470 17 HOH HOH . 
H 4 HOH A 71 471 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NWY . . . G 3 24.024 6.489 21.263 0.6 43.3 ? N1 NWY 306 A 1 
HETATM 2 C C4 NWY . . . G 3 26.001 5.754 22.466 0.6 39.19 ? C4 NWY 306 A 1 
HETATM 3 C C5 NWY . . . G 3 27.393 6.038 22.932 0.6 40.73 ? C5 NWY 306 A 1 
HETATM 4 C C6 NWY . . . G 3 29.148 5.227 21.23 0.6 43.1 ? C6 NWY 306 A 1 
HETATM 5 C C7 NWY . . . G 3 30.178 5.668 20.191 0.6 41.8 ? C7 NWY 306 A 1 
HETATM 6 C C8 NWY . . . G 3 29.994 4.96 18.843 0.6 42.41 ? C8 NWY 306 A 1 
HETATM 7 C C10 NWY . . . G 3 31.555 4.948 20.353 0.6 42.54 ? C10 NWY 306 A 1 
HETATM 8 N N NWY . . . G 3 28.423 6.26 21.86 0.6 40.08 ? N NWY 306 A 1 
HETATM 9 C C NWY . . . G 3 22.083 5.04 21.005 0.6 41.12 ? C NWY 306 A 1 
HETATM 10 O O NWY . . . G 3 28.971 4.017 21.483 0.6 35.64 ? O NWY 306 A 1 
HETATM 11 C C1 NWY . . . G 3 23.434 5.278 21.56 0.6 41.92 ? C1 NWY 306 A 1 
HETATM 12 C C11 NWY . . . G 3 25.281 6.7 21.716 0.6 40.42 ? C11 NWY 306 A 1 
HETATM 13 C C2 NWY . . . G 3 24.073 4.274 22.322 0.6 37.49 ? C2 NWY 306 A 1 
HETATM 14 C C3 NWY . . . G 3 25.379 4.533 22.778 0.6 38.69 ? C3 NWY 306 A 1 
HETATM 15 C C9 NWY . . . G 3 31.426 4.395 18.92 0.6 40.53 ? C9 NWY 306 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#