data_5QRM
#
_model_server_result.job_id            8gDofz7C7dzglt37DYIQnQ 
_model_server_result.datetime_utc      '2024-11-21 23:43:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qrm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5QRM 
#
_exptl.entry_id    5QRM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5QRM 
_cell.length_a            60.089 
_cell.length_b            60.089 
_cell.length_c            109.982 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QRM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 100 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc2 A SG CYS 83 A CYS 122 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc3 A SG CYS 83 A CYS 122 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc4 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc5 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc6 A OE1 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? 
metalc ? metalc7 A OE2 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc8 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc9 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc10 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc11 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.589 ? 
metalc ? metalc12 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc13 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc14 B CD CD . A CD 301 1_555 H O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc15 B CD CD . A CD 301 1_555 H O HOH . A HOH 453 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc16 C CD CD . A CD 302 1_555 H O HOH . A HOH 454 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc17 C CD CD . A CD 302 1_555 H O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc18 D CD CD . A CD 303 1_555 H O HOH . A HOH 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc19 D CD CD . A CD 303 1_555 H O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc20 D CD CD . A CD 303 1_555 H O HOH . A HOH 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc21 E CD CD . A CD 304 1_555 H O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc22 E CD CD . A CD 304 1_555 H O HOH . A HOH 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc23 E CD CD . A CD 304 1_555 H O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc24 F CD CD . A CD 305 1_555 H O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc25 F CD CD . A CD 305 1_555 H O HOH . A HOH 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5QRM 
_atom_sites.fract_transf_matrix[1][1]    0.016642 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016642 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009092 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 301 1 CD CD . 
C 2 CD A 1 302 2 CD CD . 
D 2 CD A 1 303 3 CD CD . 
E 2 CD A 1 304 4 CD CD . 
F 2 CD A 1 305 5 CD CD . 
G 3 K1A A 1 306 1 K1A LIG . 
H 4 HOH A 1 401 24 HOH HOH . 
H 4 HOH A 2 402 54 HOH HOH . 
H 4 HOH A 3 403 79 HOH HOH . 
H 4 HOH A 4 404 48 HOH HOH . 
H 4 HOH A 5 405 18 HOH HOH . 
H 4 HOH A 6 406 61 HOH HOH . 
H 4 HOH A 7 407 53 HOH HOH . 
H 4 HOH A 8 408 58 HOH HOH . 
H 4 HOH A 9 409 21 HOH HOH . 
H 4 HOH A 10 410 51 HOH HOH . 
H 4 HOH A 11 411 71 HOH HOH . 
H 4 HOH A 12 412 45 HOH HOH . 
H 4 HOH A 13 413 70 HOH HOH . 
H 4 HOH A 14 414 68 HOH HOH . 
H 4 HOH A 15 415 16 HOH HOH . 
H 4 HOH A 16 416 44 HOH HOH . 
H 4 HOH A 17 417 14 HOH HOH . 
H 4 HOH A 18 418 41 HOH HOH . 
H 4 HOH A 19 419 32 HOH HOH . 
H 4 HOH A 20 420 52 HOH HOH . 
H 4 HOH A 21 421 52 HOH HOH . 
H 4 HOH A 22 422 10 HOH HOH . 
H 4 HOH A 23 423 17 HOH HOH . 
H 4 HOH A 24 424 56 HOH HOH . 
H 4 HOH A 25 425 4 HOH HOH . 
H 4 HOH A 26 426 11 HOH HOH . 
H 4 HOH A 27 427 67 HOH HOH . 
H 4 HOH A 28 428 63 HOH HOH . 
H 4 HOH A 29 429 1 HOH HOH . 
H 4 HOH A 30 430 50 HOH HOH . 
H 4 HOH A 31 431 47 HOH HOH . 
H 4 HOH A 32 432 31 HOH HOH . 
H 4 HOH A 33 433 6 HOH HOH . 
H 4 HOH A 34 434 33 HOH HOH . 
H 4 HOH A 35 435 55 HOH HOH . 
H 4 HOH A 36 436 60 HOH HOH . 
H 4 HOH A 37 437 49 HOH HOH . 
H 4 HOH A 38 438 45 HOH HOH . 
H 4 HOH A 39 439 66 HOH HOH . 
H 4 HOH A 40 440 64 HOH HOH . 
H 4 HOH A 41 441 8 HOH HOH . 
H 4 HOH A 42 442 8 HOH HOH . 
H 4 HOH A 43 443 73 HOH HOH . 
H 4 HOH A 44 444 75 HOH HOH . 
H 4 HOH A 45 445 28 HOH HOH . 
H 4 HOH A 46 446 23 HOH HOH . 
H 4 HOH A 47 447 30 HOH HOH . 
H 4 HOH A 48 448 2 HOH HOH . 
H 4 HOH A 49 449 12 HOH HOH . 
H 4 HOH A 50 450 65 HOH HOH . 
H 4 HOH A 51 451 14 HOH HOH . 
H 4 HOH A 52 452 46 HOH HOH . 
H 4 HOH A 53 453 1 HOH HOH . 
H 4 HOH A 54 454 4 HOH HOH . 
H 4 HOH A 55 455 77 HOH HOH . 
H 4 HOH A 56 456 57 HOH HOH . 
H 4 HOH A 57 457 7 HOH HOH . 
H 4 HOH A 58 458 5 HOH HOH . 
H 4 HOH A 59 459 72 HOH HOH . 
H 4 HOH A 60 460 3 HOH HOH . 
H 4 HOH A 61 461 3 HOH HOH . 
H 4 HOH A 62 462 62 HOH HOH . 
H 4 HOH A 63 463 10 HOH HOH . 
H 4 HOH A 64 464 78 HOH HOH . 
H 4 HOH A 65 465 43 HOH HOH . 
H 4 HOH A 66 466 13 HOH HOH . 
H 4 HOH A 67 467 17 HOH HOH . 
H 4 HOH A 68 468 18 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               30.044 
_atom_site.Cartn_y               -3.222 
_atom_site.Cartn_z               0 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        17.26 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           301 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#