data_5QRN
#
_model_server_result.job_id            d5ykF_F22fmbjwLqHlLMnQ 
_model_server_result.datetime_utc      '2024-11-05 00:03:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qrn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    5QRN 
#
_exptl.entry_id    5QRN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              211.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2,6-difluorophenyl)(pyrrolidin-1-yl)methanone 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5QRN 
_cell.length_a            59.823 
_cell.length_b            59.823 
_cell.length_c            110.552 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QRN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 100 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc2 A SG CYS 83 A CYS 122 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
metalc ? metalc3 A SG CYS 83 A CYS 122 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? 
metalc ? metalc4 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc5 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc6 A OE2 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc7 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc8 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc9 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc10 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.53 ? 
metalc ? metalc11 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc12 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc13 B CD CD . A CD 301 1_555 H O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc14 B CD CD . A CD 301 1_555 H O HOH . A HOH 445 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc15 C CD CD . A CD 302 1_555 H O HOH . A HOH 455 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc16 C CD CD . A CD 302 1_555 H O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc17 D CD CD . A CD 303 1_555 H O HOH . A HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc18 D CD CD . A CD 303 1_555 H O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
metalc ? metalc19 D CD CD . A CD 303 1_555 H O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? 
metalc ? metalc20 E CD CD . A CD 304 1_555 H O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? 
metalc ? metalc21 E CD CD . A CD 304 1_555 H O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc22 E CD CD . A CD 304 1_555 H O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc23 F CD CD . A CD 305 1_555 H O HOH . A HOH 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc24 F CD CD . A CD 305 1_555 H O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
#
_chem_comp.formula           'C11 H11 F2 N O' 
_chem_comp.formula_weight    211.208 
_chem_comp.id                NX7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2,6-difluorophenyl)(pyrrolidin-1-yl)methanone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C8 NX7 sing 237 n n 
C9 C10 NX7 sing 238 n n 
C8 C7 NX7 sing 239 n n 
C10 N NX7 sing 240 n n 
C7 N NX7 sing 241 n n 
N C6 NX7 sing 242 n n 
F C NX7 sing 243 n n 
C6 C5 NX7 sing 244 n n 
C6 O NX7 doub 245 n n 
C5 C NX7 doub 246 n y 
C5 C4 NX7 sing 247 n y 
C C1 NX7 sing 248 n y 
F1 C4 NX7 sing 249 n n 
C4 C3 NX7 doub 250 n y 
C1 C2 NX7 doub 251 n y 
C3 C2 NX7 sing 252 n y 
C7 H1 NX7 sing 253 n n 
C7 H2 NX7 sing 254 n n 
C8 H3 NX7 sing 255 n n 
C8 H4 NX7 sing 256 n n 
C10 H5 NX7 sing 257 n n 
C10 H6 NX7 sing 258 n n 
C1 H7 NX7 sing 259 n n 
C2 H8 NX7 sing 260 n n 
C3 H9 NX7 sing 261 n n 
C9 H10 NX7 sing 262 n n 
C9 H11 NX7 sing 263 n n 
#
_atom_sites.entry_id                     5QRN 
_atom_sites.fract_transf_matrix[1][1]    0.016716 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016716 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009046 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 301 1 CD CD . 
C 2 CD A 1 302 2 CD CD . 
D 2 CD A 1 303 3 CD CD . 
E 2 CD A 1 304 4 CD CD . 
F 2 CD A 1 305 5 CD CD . 
G 3 NX7 A 1 306 1 NX7 LIG . 
H 4 HOH A 1 401 79 HOH HOH . 
H 4 HOH A 2 402 21 HOH HOH . 
H 4 HOH A 3 403 61 HOH HOH . 
H 4 HOH A 4 404 48 HOH HOH . 
H 4 HOH A 5 405 58 HOH HOH . 
H 4 HOH A 6 406 24 HOH HOH . 
H 4 HOH A 7 407 53 HOH HOH . 
H 4 HOH A 8 408 45 HOH HOH . 
H 4 HOH A 9 409 68 HOH HOH . 
H 4 HOH A 10 410 32 HOH HOH . 
H 4 HOH A 11 411 14 HOH HOH . 
H 4 HOH A 12 412 16 HOH HOH . 
H 4 HOH A 13 413 54 HOH HOH . 
H 4 HOH A 14 414 51 HOH HOH . 
H 4 HOH A 15 415 44 HOH HOH . 
H 4 HOH A 16 416 17 HOH HOH . 
H 4 HOH A 17 417 41 HOH HOH . 
H 4 HOH A 18 418 52 HOH HOH . 
H 4 HOH A 19 419 71 HOH HOH . 
H 4 HOH A 20 420 50 HOH HOH . 
H 4 HOH A 21 421 70 HOH HOH . 
H 4 HOH A 22 422 18 HOH HOH . 
H 4 HOH A 23 423 10 HOH HOH . 
H 4 HOH A 24 424 52 HOH HOH . 
H 4 HOH A 25 425 47 HOH HOH . 
H 4 HOH A 26 426 4 HOH HOH . 
H 4 HOH A 27 427 33 HOH HOH . 
H 4 HOH A 28 428 49 HOH HOH . 
H 4 HOH A 29 429 31 HOH HOH . 
H 4 HOH A 30 430 45 HOH HOH . 
H 4 HOH A 31 431 56 HOH HOH . 
H 4 HOH A 32 432 63 HOH HOH . 
H 4 HOH A 33 433 67 HOH HOH . 
H 4 HOH A 34 434 6 HOH HOH . 
H 4 HOH A 35 435 1 HOH HOH . 
H 4 HOH A 36 436 60 HOH HOH . 
H 4 HOH A 37 437 69 HOH HOH . 
H 4 HOH A 38 438 75 HOH HOH . 
H 4 HOH A 39 439 73 HOH HOH . 
H 4 HOH A 40 440 55 HOH HOH . 
H 4 HOH A 41 441 66 HOH HOH . 
H 4 HOH A 42 442 8 HOH HOH . 
H 4 HOH A 43 443 8 HOH HOH . 
H 4 HOH A 44 444 57 HOH HOH . 
H 4 HOH A 45 445 1 HOH HOH . 
H 4 HOH A 46 446 14 HOH HOH . 
H 4 HOH A 47 447 28 HOH HOH . 
H 4 HOH A 48 448 30 HOH HOH . 
H 4 HOH A 49 449 12 HOH HOH . 
H 4 HOH A 50 450 23 HOH HOH . 
H 4 HOH A 51 451 64 HOH HOH . 
H 4 HOH A 52 452 2 HOH HOH . 
H 4 HOH A 53 453 46 HOH HOH . 
H 4 HOH A 54 454 77 HOH HOH . 
H 4 HOH A 55 455 4 HOH HOH . 
H 4 HOH A 56 456 65 HOH HOH . 
H 4 HOH A 57 457 15 HOH HOH . 
H 4 HOH A 58 458 6 HOH HOH . 
H 4 HOH A 59 459 7 HOH HOH . 
H 4 HOH A 60 460 3 HOH HOH . 
H 4 HOH A 61 461 72 HOH HOH . 
H 4 HOH A 62 462 3 HOH HOH . 
H 4 HOH A 63 463 5 HOH HOH . 
H 4 HOH A 64 464 10 HOH HOH . 
H 4 HOH A 65 465 59 HOH HOH . 
H 4 HOH A 66 466 62 HOH HOH . 
H 4 HOH A 67 467 43 HOH HOH . 
H 4 HOH A 68 468 78 HOH HOH . 
H 4 HOH A 69 469 16 HOH HOH . 
H 4 HOH A 70 470 17 HOH HOH . 
H 4 HOH A 71 471 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 NX7 . . . G 3 27.993 5.384 21.858 0.68 59.55 ? C4 NX7 306 A 1 
HETATM 2 C C5 NX7 . . . G 3 28.783 6.503 21.535 0.68 60.29 ? C5 NX7 306 A 1 
HETATM 3 C C6 NX7 . . . G 3 30.245 6.277 21.289 0.68 62.19 ? C6 NX7 306 A 1 
HETATM 4 C C7 NX7 . . . G 3 32.039 5.175 19.95 0.68 58.02 ? C7 NX7 306 A 1 
HETATM 5 C C8 NX7 . . . G 3 32.086 5.253 18.453 0.68 57.95 ? C8 NX7 306 A 1 
HETATM 6 C C10 NX7 . . . G 3 29.761 4.935 19.175 0.68 56.94 ? C10 NX7 306 A 1 
HETATM 7 N N NX7 . . . G 3 30.645 5.493 20.225 0.68 58.7 ? N NX7 306 A 1 
HETATM 8 C C NX7 . . . G 3 28.2 7.786 21.63 0.68 63.77 ? C NX7 306 A 1 
HETATM 9 O O NX7 . . . G 3 31.092 6.79 22.027 0.68 66.6 ? O NX7 306 A 1 
HETATM 10 C C1 NX7 . . . G 3 26.885 7.965 22.108 0.68 62.93 ? C1 NX7 306 A 1 
HETATM 11 C C2 NX7 . . . G 3 26.142 6.837 22.474 0.68 61 ? C2 NX7 306 A 1 
HETATM 12 C C3 NX7 . . . G 3 26.668 5.542 22.346 0.68 59.07 ? C3 NX7 306 A 1 
HETATM 13 C C9 NX7 . . . G 3 30.721 4.724 17.997 0.68 57.82 ? C9 NX7 306 A 1 
HETATM 14 F F NX7 . . . G 3 28.873 8.85 21.231 0.68 66.32 ? F NX7 306 A 1 
HETATM 15 F F1 NX7 . . . G 3 28.509 4.138 21.664 0.68 52.15 ? F1 NX7 306 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           15 
#