data_5QRO
#
_model_server_result.job_id            y8EGAe37-B21l2ZPhhr3kA 
_model_server_result.datetime_utc      '2024-11-05 14:56:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qro 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    5QRO 
#
_exptl.entry_id    5QRO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              204.268 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1S)-N,2,2-trimethyl-N-(pyridin-3-yl)cyclopropane-1-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5QRO 
_cell.length_a            60.089 
_cell.length_b            60.089 
_cell.length_c            110.488 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QRO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 100 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc2 A SG CYS 83 A CYS 122 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc3 A SG CYS 83 A CYS 122 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc4 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? 
metalc ? metalc5 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc6 A OE1 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc7 A OE2 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc8 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc9 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc10 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc11 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc12 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc13 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc14 B CD CD . A CD 301 1_555 H O HOH . A HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc15 B CD CD . A CD 301 1_555 H O HOH . A HOH 450 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc16 C CD CD . A CD 302 1_555 H O HOH . A HOH 457 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc17 C CD CD . A CD 302 1_555 H O HOH . A HOH 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc18 D CD CD . A CD 303 1_555 H O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc19 D CD CD . A CD 303 1_555 H O HOH . A HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? 
metalc ? metalc20 E CD CD . A CD 304 1_555 H O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc21 E CD CD . A CD 304 1_555 H O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc22 E CD CD . A CD 304 1_555 H O HOH . A HOH 467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc23 F CD CD . A CD 305 1_555 H O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc24 F CD CD . A CD 305 1_555 H O HOH . A HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc25 F CD CD . A CD 305 1_555 H O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
#
_chem_comp.formula           'C12 H16 N2 O' 
_chem_comp.formula_weight    204.268 
_chem_comp.id                NXJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1S)-N,2,2-trimethyl-N-(pyridin-3-yl)cyclopropane-1-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 C4 NXJ sing 237 n n 
C5 C4 NXJ sing 238 n n 
C4 C3 NXJ sing 239 n n 
C4 C2 NXJ sing 240 n n 
C3 C2 NXJ sing 241 n n 
C11 N1 NXJ doub 242 n y 
C11 C7 NXJ sing 243 n y 
N1 C10 NXJ sing 244 n y 
C2 C1 NXJ sing 245 n n 
O C1 NXJ doub 246 n n 
C1 N NXJ sing 247 n n 
N C7 NXJ sing 248 n n 
N C NXJ sing 249 n n 
C7 C8 NXJ doub 250 n y 
C10 C9 NXJ doub 251 n y 
C8 C9 NXJ sing 252 n y 
C5 H1 NXJ sing 253 n n 
C5 H2 NXJ sing 254 n n 
C5 H3 NXJ sing 255 n n 
C6 H4 NXJ sing 256 n n 
C6 H5 NXJ sing 257 n n 
C6 H6 NXJ sing 258 n n 
C8 H7 NXJ sing 259 n n 
C10 H8 NXJ sing 260 n n 
C H9 NXJ sing 261 n n 
C H10 NXJ sing 262 n n 
C H11 NXJ sing 263 n n 
C11 H12 NXJ sing 264 n n 
C2 H13 NXJ sing 265 n n 
C3 H14 NXJ sing 266 n n 
C3 H15 NXJ sing 267 n n 
C9 H16 NXJ sing 268 n n 
#
_atom_sites.entry_id                     5QRO 
_atom_sites.fract_transf_matrix[1][1]    0.016642 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016642 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 301 1 CD CD . 
C 2 CD A 1 302 2 CD CD . 
D 2 CD A 1 303 3 CD CD . 
E 2 CD A 1 304 4 CD CD . 
F 2 CD A 1 305 5 CD CD . 
G 3 NXJ A 1 306 1 NXJ LIG . 
H 4 HOH A 1 401 48 HOH HOH . 
H 4 HOH A 2 402 79 HOH HOH . 
H 4 HOH A 3 403 21 HOH HOH . 
H 4 HOH A 4 404 24 HOH HOH . 
H 4 HOH A 5 405 58 HOH HOH . 
H 4 HOH A 6 406 45 HOH HOH . 
H 4 HOH A 7 407 61 HOH HOH . 
H 4 HOH A 8 408 32 HOH HOH . 
H 4 HOH A 9 409 68 HOH HOH . 
H 4 HOH A 10 410 54 HOH HOH . 
H 4 HOH A 11 411 44 HOH HOH . 
H 4 HOH A 12 412 53 HOH HOH . 
H 4 HOH A 13 413 42 HOH HOH . 
H 4 HOH A 14 414 76 HOH HOH . 
H 4 HOH A 15 415 70 HOH HOH . 
H 4 HOH A 16 416 16 HOH HOH . 
H 4 HOH A 17 417 41 HOH HOH . 
H 4 HOH A 18 418 55 HOH HOH . 
H 4 HOH A 19 419 14 HOH HOH . 
H 4 HOH A 20 420 51 HOH HOH . 
H 4 HOH A 21 421 52 HOH HOH . 
H 4 HOH A 22 422 63 HOH HOH . 
H 4 HOH A 23 423 56 HOH HOH . 
H 4 HOH A 24 424 4 HOH HOH . 
H 4 HOH A 25 425 47 HOH HOH . 
H 4 HOH A 26 426 17 HOH HOH . 
H 4 HOH A 27 427 52 HOH HOH . 
H 4 HOH A 28 428 49 HOH HOH . 
H 4 HOH A 29 429 10 HOH HOH . 
H 4 HOH A 30 430 67 HOH HOH . 
H 4 HOH A 31 431 71 HOH HOH . 
H 4 HOH A 32 432 50 HOH HOH . 
H 4 HOH A 33 433 33 HOH HOH . 
H 4 HOH A 34 434 45 HOH HOH . 
H 4 HOH A 35 435 75 HOH HOH . 
H 4 HOH A 36 436 6 HOH HOH . 
H 4 HOH A 37 437 69 HOH HOH . 
H 4 HOH A 38 438 31 HOH HOH . 
H 4 HOH A 39 439 1 HOH HOH . 
H 4 HOH A 40 440 60 HOH HOH . 
H 4 HOH A 41 441 57 HOH HOH . 
H 4 HOH A 42 442 73 HOH HOH . 
H 4 HOH A 43 443 8 HOH HOH . 
H 4 HOH A 44 444 64 HOH HOH . 
H 4 HOH A 45 445 66 HOH HOH . 
H 4 HOH A 46 446 8 HOH HOH . 
H 4 HOH A 47 447 23 HOH HOH . 
H 4 HOH A 48 448 30 HOH HOH . 
H 4 HOH A 49 449 18 HOH HOH . 
H 4 HOH A 50 450 1 HOH HOH . 
H 4 HOH A 51 451 14 HOH HOH . 
H 4 HOH A 52 452 2 HOH HOH . 
H 4 HOH A 53 453 28 HOH HOH . 
H 4 HOH A 54 454 12 HOH HOH . 
H 4 HOH A 55 455 11 HOH HOH . 
H 4 HOH A 56 456 46 HOH HOH . 
H 4 HOH A 57 457 4 HOH HOH . 
H 4 HOH A 58 458 15 HOH HOH . 
H 4 HOH A 59 459 77 HOH HOH . 
H 4 HOH A 60 460 65 HOH HOH . 
H 4 HOH A 61 461 6 HOH HOH . 
H 4 HOH A 62 462 7 HOH HOH . 
H 4 HOH A 63 463 3 HOH HOH . 
H 4 HOH A 64 464 72 HOH HOH . 
H 4 HOH A 65 465 62 HOH HOH . 
H 4 HOH A 66 466 3 HOH HOH . 
H 4 HOH A 67 467 5 HOH HOH . 
H 4 HOH A 68 468 10 HOH HOH . 
H 4 HOH A 69 469 43 HOH HOH . 
H 4 HOH A 70 470 78 HOH HOH . 
H 4 HOH A 71 471 16 HOH HOH . 
H 4 HOH A 72 472 17 HOH HOH . 
H 4 HOH A 73 473 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NXJ . . . G 3 28.579 9.575 20.736 0.64 48.73 ? N1 NXJ 306 A 1 
HETATM 2 C C4 NXJ . . . G 3 31.033 5.792 19.654 0.64 44.94 ? C4 NXJ 306 A 1 
HETATM 3 C C5 NXJ . . . G 3 31.755 6.997 19.115 0.64 46.76 ? C5 NXJ 306 A 1 
HETATM 4 C C6 NXJ . . . G 3 30.243 5.081 18.606 0.64 45.43 ? C6 NXJ 306 A 1 
HETATM 5 C C7 NXJ . . . G 3 28.214 7.469 21.88 0.64 46.05 ? C7 NXJ 306 A 1 
HETATM 6 C C8 NXJ . . . G 3 27.915 8.175 23.077 0.64 46.58 ? C8 NXJ 306 A 1 
HETATM 7 C C10 NXJ . . . G 3 28.276 10.222 21.907 0.64 47.11 ? C10 NXJ 306 A 1 
HETATM 8 N N NXJ . . . G 3 28.112 6.035 21.831 0.64 41.14 ? N NXJ 306 A 1 
HETATM 9 C C NXJ . . . G 3 26.772 5.499 22.212 0.64 42.39 ? C NXJ 306 A 1 
HETATM 10 O O NXJ . . . G 3 29.023 3.954 21.41 0.64 34.64 ? O NXJ 306 A 1 
HETATM 11 C C1 NXJ . . . G 3 29.198 5.184 21.449 0.64 42.97 ? C1 NXJ 306 A 1 
HETATM 12 C C11 NXJ . . . G 3 28.552 8.222 20.723 0.64 46.57 ? C11 NXJ 306 A 1 
HETATM 13 C C2 NXJ . . . G 3 30.535 5.838 21.096 0.64 42.91 ? C2 NXJ 306 A 1 
HETATM 14 C C3 NXJ . . . G 3 31.718 4.963 20.718 0.64 45.33 ? C3 NXJ 306 A 1 
HETATM 15 C C9 NXJ . . . G 3 27.948 9.565 23.08 0.64 45.46 ? C9 NXJ 306 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#