data_5QRY
#
_model_server_result.job_id            Z3eaNpP4EC2IL0kOFXLdrg 
_model_server_result.datetime_utc      '2024-11-06 03:24:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qry 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    5QRY 
#
_exptl.entry_id    5QRY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              219.283 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-methyl-N-phenylpiperazine-1-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5QRY 
_cell.length_a            60.095 
_cell.length_b            60.095 
_cell.length_c            110.247 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QRY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 100 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc2 A SG CYS 83 A CYS 122 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? 
metalc ? metalc3 A SG CYS 83 A CYS 122 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? 
metalc ? metalc4 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc5 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc6 A OE1 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc7 A OE2 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc8 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc9 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc10 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.475 ? 
metalc ? metalc11 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.567 ? 
metalc ? metalc12 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc13 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc14 B CD CD . A CD 301 1_555 H O HOH . A HOH 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
metalc ? metalc15 B CD CD . A CD 301 1_555 H O HOH . A HOH 438 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? 
metalc ? metalc16 C CD CD . A CD 302 1_555 H O HOH . A HOH 457 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc17 C CD CD . A CD 302 1_555 H O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc18 D CD CD . A CD 303 1_555 H O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc19 D CD CD . A CD 303 1_555 H O HOH . A HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc20 D CD CD . A CD 303 1_555 H O HOH . A HOH 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc21 E CD CD . A CD 304 1_555 H O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc22 E CD CD . A CD 304 1_555 H O HOH . A HOH 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc23 E CD CD . A CD 304 1_555 H O HOH . A HOH 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc24 F CD CD . A CD 305 1_555 H O HOH . A HOH 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? 
metalc ? metalc25 F CD CD . A CD 305 1_555 H O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
#
_chem_comp.formula           'C12 H17 N3 O' 
_chem_comp.formula_weight    219.283 
_chem_comp.id                NZD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-methyl-N-phenylpiperazine-1-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C10 NZD doub 237 n y 
C11 C12 NZD sing 238 n y 
C10 C9 NZD sing 239 n y 
C12 C7 NZD doub 240 n y 
C9 C8 NZD doub 241 n y 
C7 C8 NZD sing 242 n y 
C7 N3 NZD sing 243 n n 
N3 C6 NZD sing 244 n n 
O1 C6 NZD doub 245 n n 
C6 N2 NZD sing 246 n n 
N2 C3 NZD sing 247 n n 
N2 C4 NZD sing 248 n n 
C3 C2 NZD sing 249 n n 
C5 N1 NZD sing 250 n n 
C5 C4 NZD sing 251 n n 
N1 C2 NZD sing 252 n n 
N1 C1 NZD sing 253 n n 
N3 H2 NZD sing 254 n n 
C4 H3 NZD sing 255 n n 
C4 H4 NZD sing 256 n n 
C5 H5 NZD sing 257 n n 
C5 H6 NZD sing 258 n n 
C8 H7 NZD sing 259 n n 
C10 H8 NZD sing 260 n n 
C1 H9 NZD sing 261 n n 
C1 H10 NZD sing 262 n n 
C1 H11 NZD sing 263 n n 
C11 H12 NZD sing 264 n n 
C12 H13 NZD sing 265 n n 
C2 H14 NZD sing 266 n n 
C2 H15 NZD sing 267 n n 
C3 H16 NZD sing 268 n n 
C3 H17 NZD sing 269 n n 
C9 H18 NZD sing 270 n n 
#
_atom_sites.entry_id                     5QRY 
_atom_sites.fract_transf_matrix[1][1]    0.01664 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01664 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009071 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 301 1 CD CD . 
C 2 CD A 1 302 2 CD CD . 
D 2 CD A 1 303 3 CD CD . 
E 2 CD A 1 304 4 CD CD . 
F 2 CD A 1 305 5 CD CD . 
G 3 NZD A 1 306 1 NZD LIG . 
H 4 HOH A 1 401 79 HOH HOH . 
H 4 HOH A 2 402 48 HOH HOH . 
H 4 HOH A 3 403 24 HOH HOH . 
H 4 HOH A 4 404 61 HOH HOH . 
H 4 HOH A 5 405 58 HOH HOH . 
H 4 HOH A 6 406 21 HOH HOH . 
H 4 HOH A 7 407 53 HOH HOH . 
H 4 HOH A 8 408 68 HOH HOH . 
H 4 HOH A 9 409 54 HOH HOH . 
H 4 HOH A 10 410 45 HOH HOH . 
H 4 HOH A 11 411 32 HOH HOH . 
H 4 HOH A 12 412 41 HOH HOH . 
H 4 HOH A 13 413 16 HOH HOH . 
H 4 HOH A 14 414 70 HOH HOH . 
H 4 HOH A 15 415 52 HOH HOH . 
H 4 HOH A 16 416 44 HOH HOH . 
H 4 HOH A 17 417 51 HOH HOH . 
H 4 HOH A 18 418 14 HOH HOH . 
H 4 HOH A 19 419 52 HOH HOH . 
H 4 HOH A 20 420 47 HOH HOH . 
H 4 HOH A 21 421 69 HOH HOH . 
H 4 HOH A 22 422 56 HOH HOH . 
H 4 HOH A 23 423 71 HOH HOH . 
H 4 HOH A 24 424 17 HOH HOH . 
H 4 HOH A 25 425 10 HOH HOH . 
H 4 HOH A 26 426 4 HOH HOH . 
H 4 HOH A 27 427 63 HOH HOH . 
H 4 HOH A 28 428 31 HOH HOH . 
H 4 HOH A 29 429 33 HOH HOH . 
H 4 HOH A 30 430 49 HOH HOH . 
H 4 HOH A 31 431 67 HOH HOH . 
H 4 HOH A 32 432 55 HOH HOH . 
H 4 HOH A 33 433 6 HOH HOH . 
H 4 HOH A 34 434 50 HOH HOH . 
H 4 HOH A 35 435 73 HOH HOH . 
H 4 HOH A 36 436 45 HOH HOH . 
H 4 HOH A 37 437 66 HOH HOH . 
H 4 HOH A 38 438 1 HOH HOH . 
H 4 HOH A 39 439 8 HOH HOH . 
H 4 HOH A 40 440 1 HOH HOH . 
H 4 HOH A 41 441 60 HOH HOH . 
H 4 HOH A 42 442 57 HOH HOH . 
H 4 HOH A 43 443 75 HOH HOH . 
H 4 HOH A 44 444 11 HOH HOH . 
H 4 HOH A 45 445 8 HOH HOH . 
H 4 HOH A 46 446 18 HOH HOH . 
H 4 HOH A 47 447 64 HOH HOH . 
H 4 HOH A 48 448 30 HOH HOH . 
H 4 HOH A 49 449 28 HOH HOH . 
H 4 HOH A 50 450 2 HOH HOH . 
H 4 HOH A 51 451 14 HOH HOH . 
H 4 HOH A 52 452 12 HOH HOH . 
H 4 HOH A 53 453 15 HOH HOH . 
H 4 HOH A 54 454 46 HOH HOH . 
H 4 HOH A 55 455 23 HOH HOH . 
H 4 HOH A 56 456 77 HOH HOH . 
H 4 HOH A 57 457 4 HOH HOH . 
H 4 HOH A 58 458 65 HOH HOH . 
H 4 HOH A 59 459 6 HOH HOH . 
H 4 HOH A 60 460 7 HOH HOH . 
H 4 HOH A 61 461 72 HOH HOH . 
H 4 HOH A 62 462 5 HOH HOH . 
H 4 HOH A 63 463 3 HOH HOH . 
H 4 HOH A 64 464 3 HOH HOH . 
H 4 HOH A 65 465 10 HOH HOH . 
H 4 HOH A 66 466 13 HOH HOH . 
H 4 HOH A 67 467 62 HOH HOH . 
H 4 HOH A 68 468 43 HOH HOH . 
H 4 HOH A 69 469 78 HOH HOH . 
H 4 HOH A 70 470 16 HOH HOH . 
H 4 HOH A 71 471 18 HOH HOH . 
H 4 HOH A 72 472 17 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NZD . . . G 3 24.279 6.531 22.65 1 81.45 ? N1 NZD 306 A 1 
HETATM 2 N N3 NZD . . . G 3 28.869 6.166 20.967 1 63.09 ? N3 NZD 306 A 1 
HETATM 3 C C4 NZD . . . G 3 26.078 4.859 23.024 1 73.7 ? C4 NZD 306 A 1 
HETATM 4 C C5 NZD . . . G 3 24.63 5.105 22.649 1 77.76 ? C5 NZD 306 A 1 
HETATM 5 C C6 NZD . . . G 3 28.077 5.25 21.614 1 66.75 ? C6 NZD 306 A 1 
HETATM 6 C C7 NZD . . . G 3 30.095 5.816 20.355 1 60.18 ? C7 NZD 306 A 1 
HETATM 7 C C8 NZD . . . G 3 31.289 6.381 20.772 1 56.29 ? C8 NZD 306 A 1 
HETATM 8 C C10 NZD . . . G 3 32.48 5.048 19.177 1 51.42 ? C10 NZD 306 A 1 
HETATM 9 C C1 NZD . . . G 3 23.025 6.796 23.361 1 82.27 ? C1 NZD 306 A 1 
HETATM 10 C C11 NZD . . . G 3 31.301 4.468 18.779 1 51.2 ? C11 NZD 306 A 1 
HETATM 11 C C12 NZD . . . G 3 30.105 4.848 19.362 1 56.45 ? C12 NZD 306 A 1 
HETATM 12 C C2 NZD . . . G 3 25.375 7.347 23.176 1 79.39 ? C2 NZD 306 A 1 
HETATM 13 C C3 NZD . . . G 3 26.634 7.147 22.362 1 75.1 ? C3 NZD 306 A 1 
HETATM 14 C C9 NZD . . . G 3 32.476 5.999 20.171 1 55.72 ? C9 NZD 306 A 1 
HETATM 15 N N2 NZD . . . G 3 26.99 5.731 22.282 1 71.13 ? N2 NZD 306 A 1 
HETATM 16 O O1 NZD . . . G 3 28.362 4.045 21.592 1 57.01 ? O1 NZD 306 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           394 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           16 
#