data_5QS6 # _model_server_result.job_id 84_0Xn9h0zIw8kR31mPDcg _model_server_result.datetime_utc '2025-01-25 07:50:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qs6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5QS6 # _exptl.entry_id 5QS6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 213.235 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-phenyl-N'-pyridin-3-ylurea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QS6 _cell.length_a 100.094 _cell.length_b 100.094 _cell.length_c 98.876 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QS6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H11 N3 O' _chem_comp.formula_weight 213.235 _chem_comp.id K0G _chem_comp.mon_nstd_flag . _chem_comp.name "N-phenyl-N'-pyridin-3-ylurea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 K0G doub 173 n y C4 C5 K0G sing 174 n y C3 C2 K0G sing 175 n y C5 C6 K0G doub 176 n y C2 C1 K0G doub 177 n y C6 C1 K0G sing 178 n y C1 N K0G sing 179 n n N C K0G sing 180 n n C O K0G doub 181 n n C N1 K0G sing 182 n n N1 C7 K0G sing 183 n n C7 C8 K0G doub 184 n y C7 C11 K0G sing 185 n y C8 C9 K0G sing 186 n y C11 N2 K0G doub 187 n y C9 C10 K0G doub 188 n y N2 C10 K0G sing 189 n y N1 H1 K0G sing 190 n n C4 H2 K0G sing 191 n n C5 H3 K0G sing 192 n n C6 H4 K0G sing 193 n n C8 H5 K0G sing 194 n n C10 H6 K0G sing 195 n n N H7 K0G sing 196 n n C11 H8 K0G sing 197 n n C2 H9 K0G sing 198 n n C3 H10 K0G sing 199 n n C9 H11 K0G sing 200 n n # _atom_sites.entry_id 5QS6 _atom_sites.fract_transf_matrix[1][1] 0.009991 _atom_sites.fract_transf_matrix[1][2] 0.005768 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K0G A 1 301 301 K0G LIG . C 3 HOH A 1 401 166 HOH HOH . C 3 HOH A 2 402 48 HOH HOH . C 3 HOH A 3 403 77 HOH HOH . C 3 HOH A 4 404 162 HOH HOH . C 3 HOH A 5 405 98 HOH HOH . C 3 HOH A 6 406 133 HOH HOH . C 3 HOH A 7 407 106 HOH HOH . C 3 HOH A 8 408 118 HOH HOH . C 3 HOH A 9 409 187 HOH HOH . C 3 HOH A 10 410 111 HOH HOH . C 3 HOH A 11 411 172 HOH HOH . C 3 HOH A 12 412 157 HOH HOH . C 3 HOH A 13 413 16 HOH HOH . C 3 HOH A 14 414 149 HOH HOH . C 3 HOH A 15 415 14 HOH HOH . C 3 HOH A 16 416 122 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 88 HOH HOH . C 3 HOH A 19 419 174 HOH HOH . C 3 HOH A 20 420 62 HOH HOH . C 3 HOH A 21 421 26 HOH HOH . C 3 HOH A 22 422 5 HOH HOH . C 3 HOH A 23 423 204 HOH HOH . C 3 HOH A 24 424 45 HOH HOH . C 3 HOH A 25 425 217 HOH HOH . C 3 HOH A 26 426 210 HOH HOH . C 3 HOH A 27 427 182 HOH HOH . C 3 HOH A 28 428 46 HOH HOH . C 3 HOH A 29 429 40 HOH HOH . C 3 HOH A 30 430 27 HOH HOH . C 3 HOH A 31 431 90 HOH HOH . C 3 HOH A 32 432 23 HOH HOH . C 3 HOH A 33 433 42 HOH HOH . C 3 HOH A 34 434 150 HOH HOH . C 3 HOH A 35 435 125 HOH HOH . C 3 HOH A 36 436 207 HOH HOH . C 3 HOH A 37 437 167 HOH HOH . C 3 HOH A 38 438 78 HOH HOH . C 3 HOH A 39 439 194 HOH HOH . C 3 HOH A 40 440 31 HOH HOH . C 3 HOH A 41 441 188 HOH HOH . C 3 HOH A 42 442 89 HOH HOH . C 3 HOH A 43 443 30 HOH HOH . C 3 HOH A 44 444 141 HOH HOH . C 3 HOH A 45 445 50 HOH HOH . C 3 HOH A 46 446 35 HOH HOH . C 3 HOH A 47 447 68 HOH HOH . C 3 HOH A 48 448 152 HOH HOH . C 3 HOH A 49 449 12 HOH HOH . C 3 HOH A 50 450 154 HOH HOH . C 3 HOH A 51 451 107 HOH HOH . C 3 HOH A 52 452 32 HOH HOH . C 3 HOH A 53 453 47 HOH HOH . C 3 HOH A 54 454 159 HOH HOH . C 3 HOH A 55 455 65 HOH HOH . C 3 HOH A 56 456 181 HOH HOH . C 3 HOH A 57 457 22 HOH HOH . C 3 HOH A 58 458 170 HOH HOH . C 3 HOH A 59 459 94 HOH HOH . C 3 HOH A 60 460 237 HOH HOH . C 3 HOH A 61 461 104 HOH HOH . C 3 HOH A 62 462 4 HOH HOH . C 3 HOH A 63 463 72 HOH HOH . C 3 HOH A 64 464 76 HOH HOH . C 3 HOH A 65 465 165 HOH HOH . C 3 HOH A 66 466 61 HOH HOH . C 3 HOH A 67 467 195 HOH HOH . C 3 HOH A 68 468 185 HOH HOH . C 3 HOH A 69 469 57 HOH HOH . C 3 HOH A 70 470 236 HOH HOH . C 3 HOH A 71 471 191 HOH HOH . C 3 HOH A 72 472 180 HOH HOH . C 3 HOH A 73 473 164 HOH HOH . C 3 HOH A 74 474 81 HOH HOH . C 3 HOH A 75 475 36 HOH HOH . C 3 HOH A 76 476 161 HOH HOH . C 3 HOH A 77 477 6 HOH HOH . C 3 HOH A 78 478 1 HOH HOH . C 3 HOH A 79 479 96 HOH HOH . C 3 HOH A 80 480 3 HOH HOH . C 3 HOH A 81 481 109 HOH HOH . C 3 HOH A 82 482 51 HOH HOH . C 3 HOH A 83 483 15 HOH HOH . C 3 HOH A 84 484 218 HOH HOH . C 3 HOH A 85 485 38 HOH HOH . C 3 HOH A 86 486 158 HOH HOH . C 3 HOH A 87 487 7 HOH HOH . C 3 HOH A 88 488 64 HOH HOH . C 3 HOH A 89 489 92 HOH HOH . C 3 HOH A 90 490 228 HOH HOH . C 3 HOH A 91 491 220 HOH HOH . C 3 HOH A 92 492 9 HOH HOH . C 3 HOH A 93 493 222 HOH HOH . C 3 HOH A 94 494 178 HOH HOH . C 3 HOH A 95 495 151 HOH HOH . C 3 HOH A 96 496 58 HOH HOH . C 3 HOH A 97 497 13 HOH HOH . C 3 HOH A 98 498 44 HOH HOH . C 3 HOH A 99 499 138 HOH HOH . C 3 HOH A 100 500 73 HOH HOH . C 3 HOH A 101 501 209 HOH HOH . C 3 HOH A 102 502 156 HOH HOH . C 3 HOH A 103 503 99 HOH HOH . C 3 HOH A 104 504 33 HOH HOH . C 3 HOH A 105 505 67 HOH HOH . C 3 HOH A 106 506 24 HOH HOH . C 3 HOH A 107 507 25 HOH HOH . C 3 HOH A 108 508 39 HOH HOH . C 3 HOH A 109 509 231 HOH HOH . C 3 HOH A 110 510 66 HOH HOH . C 3 HOH A 111 511 20 HOH HOH . C 3 HOH A 112 512 206 HOH HOH . C 3 HOH A 113 513 176 HOH HOH . C 3 HOH A 114 514 34 HOH HOH . C 3 HOH A 115 515 54 HOH HOH . C 3 HOH A 116 516 2 HOH HOH . C 3 HOH A 117 517 199 HOH HOH . C 3 HOH A 118 518 86 HOH HOH . C 3 HOH A 119 519 56 HOH HOH . C 3 HOH A 120 520 142 HOH HOH . C 3 HOH A 121 521 37 HOH HOH . C 3 HOH A 122 522 28 HOH HOH . C 3 HOH A 123 523 184 HOH HOH . C 3 HOH A 124 524 85 HOH HOH . C 3 HOH A 125 525 60 HOH HOH . C 3 HOH A 126 526 160 HOH HOH . C 3 HOH A 127 527 171 HOH HOH . C 3 HOH A 128 528 168 HOH HOH . C 3 HOH A 129 529 213 HOH HOH . C 3 HOH A 130 530 87 HOH HOH . C 3 HOH A 131 531 59 HOH HOH . C 3 HOH A 132 532 82 HOH HOH . C 3 HOH A 133 533 163 HOH HOH . C 3 HOH A 134 534 124 HOH HOH . C 3 HOH A 135 535 179 HOH HOH . C 3 HOH A 136 536 117 HOH HOH . C 3 HOH A 137 537 83 HOH HOH . C 3 HOH A 138 538 135 HOH HOH . C 3 HOH A 139 539 208 HOH HOH . C 3 HOH A 140 540 175 HOH HOH . C 3 HOH A 141 541 136 HOH HOH . C 3 HOH A 142 542 43 HOH HOH . C 3 HOH A 143 543 219 HOH HOH . C 3 HOH A 144 544 29 HOH HOH . C 3 HOH A 145 545 121 HOH HOH . C 3 HOH A 146 546 143 HOH HOH . C 3 HOH A 147 547 131 HOH HOH . C 3 HOH A 148 548 84 HOH HOH . C 3 HOH A 149 549 238 HOH HOH . C 3 HOH A 150 550 19 HOH HOH . C 3 HOH A 151 551 129 HOH HOH . C 3 HOH A 152 552 234 HOH HOH . C 3 HOH A 153 553 70 HOH HOH . C 3 HOH A 154 554 200 HOH HOH . C 3 HOH A 155 555 116 HOH HOH . C 3 HOH A 156 556 41 HOH HOH . C 3 HOH A 157 557 214 HOH HOH . C 3 HOH A 158 558 221 HOH HOH . C 3 HOH A 159 559 49 HOH HOH . C 3 HOH A 160 560 186 HOH HOH . C 3 HOH A 161 561 97 HOH HOH . C 3 HOH A 162 562 113 HOH HOH . C 3 HOH A 163 563 21 HOH HOH . C 3 HOH A 164 564 144 HOH HOH . C 3 HOH A 165 565 55 HOH HOH . C 3 HOH A 166 566 110 HOH HOH . C 3 HOH A 167 567 80 HOH HOH . C 3 HOH A 168 568 137 HOH HOH . C 3 HOH A 169 569 155 HOH HOH . C 3 HOH A 170 570 103 HOH HOH . C 3 HOH A 171 571 11 HOH HOH . C 3 HOH A 172 572 153 HOH HOH . C 3 HOH A 173 573 71 HOH HOH . C 3 HOH A 174 574 102 HOH HOH . C 3 HOH A 175 575 75 HOH HOH . C 3 HOH A 176 576 211 HOH HOH . C 3 HOH A 177 577 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 K0G . . . B 2 -16.519 -29.101 -1.124 0.45 33.9 ? N1 K0G 301 A 1 HETATM 2 C C4 K0G . . . B 2 -18.536 -29.4 4.932 0.45 43.49 ? C4 K0G 301 A 1 HETATM 3 C C5 K0G . . . B 2 -18.332 -28.134 4.443 0.45 43.8 ? C5 K0G 301 A 1 HETATM 4 C C6 K0G . . . B 2 -17.785 -27.966 3.185 0.45 43.65 ? C6 K0G 301 A 1 HETATM 5 C C7 K0G . . . B 2 -16.438 -29.636 -2.414 0.45 38.78 ? C7 K0G 301 A 1 HETATM 6 C C8 K0G . . . B 2 -15.289 -29.398 -3.174 0.45 44.03 ? C8 K0G 301 A 1 HETATM 7 C C10 K0G . . . B 2 -16.206 -30.746 -4.895 0.45 43.94 ? C10 K0G 301 A 1 HETATM 8 N N K0G . . . B 2 -16.96 -28.86 1.112 0.45 33.78 ? N K0G 301 A 1 HETATM 9 C C K0G . . . B 2 -17.134 -29.678 -0.001 0.45 35.43 ? C K0G 301 A 1 HETATM 10 O O K0G . . . B 2 -17.751 -30.75 -0.002 0.45 35.43 ? O K0G 301 A 1 HETATM 11 C C1 K0G . . . B 2 -17.455 -29.075 2.407 0.45 38.48 ? C1 K0G 301 A 1 HETATM 12 C C11 K0G . . . B 2 -17.432 -30.434 -2.961 0.45 42.66 ? C11 K0G 301 A 1 HETATM 13 C C2 K0G . . . B 2 -17.659 -30.346 2.894 0.45 42.26 ? C2 K0G 301 A 1 HETATM 14 C C3 K0G . . . B 2 -18.199 -30.489 4.165 0.45 44.24 ? C3 K0G 301 A 1 HETATM 15 C C9 K0G . . . B 2 -15.166 -29.965 -4.428 0.45 44.19 ? C9 K0G 301 A 1 HETATM 16 N N2 K0G . . . B 2 -17.319 -30.98 -4.191 0.45 45.29 ? N2 K0G 301 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 409 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #