data_5QSD # _model_server_result.job_id D9EGPaq3MIO3KMwjosg0uw _model_server_result.datetime_utc '2024-11-22 00:16:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qsd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5QSD # _exptl.entry_id 5QSD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.235 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{4-[(pyrimidin-2-yl)oxy]phenyl}acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QSD _cell.length_a 99.836 _cell.length_b 99.836 _cell.length_c 99.654 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QSD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H11 N3 O2' _chem_comp.formula_weight 229.235 _chem_comp.id O0S _chem_comp.mon_nstd_flag . _chem_comp.name N-{4-[(pyrimidin-2-yl)oxy]phenyl}acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C9 O0S doub 237 n y N2 C6 O0S sing 238 n y O1 C6 O0S sing 239 n n O1 C5 O0S sing 240 n n C10 C5 O0S doub 241 n y C10 C11 O0S sing 242 n y C9 C8 O0S sing 243 n y C6 N1 O0S doub 244 n y C5 C4 O0S sing 245 n y C11 C2 O0S doub 246 n y C4 C3 O0S doub 247 n y C8 C7 O0S doub 248 n y N1 C7 O0S sing 249 n y C2 N O0S sing 250 n n C2 C3 O0S sing 251 n y N C1 O0S sing 252 n n C1 C O0S sing 253 n n C1 O O0S doub 254 n n C4 H1 O0S sing 255 n n C7 H2 O0S sing 256 n n C8 H3 O0S sing 257 n n C10 H4 O0S sing 258 n n N H5 O0S sing 259 n n C H6 O0S sing 260 n n C H7 O0S sing 261 n n C H8 O0S sing 262 n n C11 H9 O0S sing 263 n n C3 H10 O0S sing 264 n n C9 H11 O0S sing 265 n n # _atom_sites.entry_id 5QSD _atom_sites.fract_transf_matrix[1][1] 0.010016 _atom_sites.fract_transf_matrix[1][2] 0.005783 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011566 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O0S A 1 301 301 O0S LIG . C 3 HOH A 1 401 77 HOH HOH . C 3 HOH A 2 402 106 HOH HOH . C 3 HOH A 3 403 166 HOH HOH . C 3 HOH A 4 404 113 HOH HOH . C 3 HOH A 5 405 111 HOH HOH . C 3 HOH A 6 406 170 HOH HOH . C 3 HOH A 7 407 157 HOH HOH . C 3 HOH A 8 408 48 HOH HOH . C 3 HOH A 9 409 150 HOH HOH . C 3 HOH A 10 410 162 HOH HOH . C 3 HOH A 11 411 30 HOH HOH . C 3 HOH A 12 412 32 HOH HOH . C 3 HOH A 13 413 78 HOH HOH . C 3 HOH A 14 414 191 HOH HOH . C 3 HOH A 15 415 88 HOH HOH . C 3 HOH A 16 416 133 HOH HOH . C 3 HOH A 17 417 27 HOH HOH . C 3 HOH A 18 418 149 HOH HOH . C 3 HOH A 19 419 194 HOH HOH . C 3 HOH A 20 420 76 HOH HOH . C 3 HOH A 21 421 235 HOH HOH . C 3 HOH A 22 422 5 HOH HOH . C 3 HOH A 23 423 122 HOH HOH . C 3 HOH A 24 424 180 HOH HOH . C 3 HOH A 25 425 234 HOH HOH . C 3 HOH A 26 426 167 HOH HOH . C 3 HOH A 27 427 104 HOH HOH . C 3 HOH A 28 428 26 HOH HOH . C 3 HOH A 29 429 4 HOH HOH . C 3 HOH A 30 430 68 HOH HOH . C 3 HOH A 31 431 40 HOH HOH . C 3 HOH A 32 432 103 HOH HOH . C 3 HOH A 33 433 62 HOH HOH . C 3 HOH A 34 434 90 HOH HOH . C 3 HOH A 35 435 23 HOH HOH . C 3 HOH A 36 436 45 HOH HOH . C 3 HOH A 37 437 60 HOH HOH . C 3 HOH A 38 438 152 HOH HOH . C 3 HOH A 39 439 41 HOH HOH . C 3 HOH A 40 440 163 HOH HOH . C 3 HOH A 41 441 67 HOH HOH . C 3 HOH A 42 442 35 HOH HOH . C 3 HOH A 43 443 176 HOH HOH . C 3 HOH A 44 444 158 HOH HOH . C 3 HOH A 45 445 12 HOH HOH . C 3 HOH A 46 446 47 HOH HOH . C 3 HOH A 47 447 231 HOH HOH . C 3 HOH A 48 448 36 HOH HOH . C 3 HOH A 49 449 57 HOH HOH . C 3 HOH A 50 450 14 HOH HOH . C 3 HOH A 51 451 31 HOH HOH . C 3 HOH A 52 452 22 HOH HOH . C 3 HOH A 53 453 118 HOH HOH . C 3 HOH A 54 454 44 HOH HOH . C 3 HOH A 55 455 237 HOH HOH . C 3 HOH A 56 456 207 HOH HOH . C 3 HOH A 57 457 20 HOH HOH . C 3 HOH A 58 458 9 HOH HOH . C 3 HOH A 59 459 210 HOH HOH . C 3 HOH A 60 460 195 HOH HOH . C 3 HOH A 61 461 174 HOH HOH . C 3 HOH A 62 462 206 HOH HOH . C 3 HOH A 63 463 89 HOH HOH . C 3 HOH A 64 464 165 HOH HOH . C 3 HOH A 65 465 50 HOH HOH . C 3 HOH A 66 466 159 HOH HOH . C 3 HOH A 67 467 209 HOH HOH . C 3 HOH A 68 468 218 HOH HOH . C 3 HOH A 69 469 61 HOH HOH . C 3 HOH A 70 470 109 HOH HOH . C 3 HOH A 71 471 96 HOH HOH . C 3 HOH A 72 472 188 HOH HOH . C 3 HOH A 73 473 15 HOH HOH . C 3 HOH A 74 474 160 HOH HOH . C 3 HOH A 75 475 42 HOH HOH . C 3 HOH A 76 476 181 HOH HOH . C 3 HOH A 77 477 13 HOH HOH . C 3 HOH A 78 478 52 HOH HOH . C 3 HOH A 79 479 1 HOH HOH . C 3 HOH A 80 480 34 HOH HOH . C 3 HOH A 81 481 3 HOH HOH . C 3 HOH A 82 482 25 HOH HOH . C 3 HOH A 83 483 214 HOH HOH . C 3 HOH A 84 484 66 HOH HOH . C 3 HOH A 85 485 38 HOH HOH . C 3 HOH A 86 486 81 HOH HOH . C 3 HOH A 87 487 182 HOH HOH . C 3 HOH A 88 488 6 HOH HOH . C 3 HOH A 89 489 213 HOH HOH . C 3 HOH A 90 490 64 HOH HOH . C 3 HOH A 91 491 178 HOH HOH . C 3 HOH A 92 492 24 HOH HOH . C 3 HOH A 93 493 70 HOH HOH . C 3 HOH A 94 494 164 HOH HOH . C 3 HOH A 95 495 37 HOH HOH . C 3 HOH A 96 496 87 HOH HOH . C 3 HOH A 97 497 199 HOH HOH . C 3 HOH A 98 498 59 HOH HOH . C 3 HOH A 99 499 86 HOH HOH . C 3 HOH A 100 500 161 HOH HOH . C 3 HOH A 101 501 56 HOH HOH . C 3 HOH A 102 502 58 HOH HOH . C 3 HOH A 103 503 39 HOH HOH . C 3 HOH A 104 504 187 HOH HOH . C 3 HOH A 105 505 184 HOH HOH . C 3 HOH A 106 506 175 HOH HOH . C 3 HOH A 107 507 43 HOH HOH . C 3 HOH A 108 508 138 HOH HOH . C 3 HOH A 109 509 151 HOH HOH . C 3 HOH A 110 510 33 HOH HOH . C 3 HOH A 111 511 28 HOH HOH . C 3 HOH A 112 512 141 HOH HOH . C 3 HOH A 113 513 179 HOH HOH . C 3 HOH A 114 514 154 HOH HOH . C 3 HOH A 115 515 186 HOH HOH . C 3 HOH A 116 516 124 HOH HOH . C 3 HOH A 117 517 16 HOH HOH . C 3 HOH A 118 518 7 HOH HOH . C 3 HOH A 119 519 222 HOH HOH . C 3 HOH A 120 520 98 HOH HOH . C 3 HOH A 121 521 99 HOH HOH . C 3 HOH A 122 522 2 HOH HOH . C 3 HOH A 123 523 51 HOH HOH . C 3 HOH A 124 524 236 HOH HOH . C 3 HOH A 125 525 142 HOH HOH . C 3 HOH A 126 526 172 HOH HOH . C 3 HOH A 127 527 72 HOH HOH . C 3 HOH A 128 528 92 HOH HOH . C 3 HOH A 129 529 168 HOH HOH . C 3 HOH A 130 530 185 HOH HOH . C 3 HOH A 131 531 85 HOH HOH . C 3 HOH A 132 532 177 HOH HOH . C 3 HOH A 133 533 117 HOH HOH . C 3 HOH A 134 534 238 HOH HOH . C 3 HOH A 135 535 192 HOH HOH . C 3 HOH A 136 536 116 HOH HOH . C 3 HOH A 137 537 84 HOH HOH . C 3 HOH A 138 538 224 HOH HOH . C 3 HOH A 139 539 94 HOH HOH . C 3 HOH A 140 540 135 HOH HOH . C 3 HOH A 141 541 121 HOH HOH . C 3 HOH A 142 542 29 HOH HOH . C 3 HOH A 143 543 131 HOH HOH . C 3 HOH A 144 544 216 HOH HOH . C 3 HOH A 145 545 136 HOH HOH . C 3 HOH A 146 546 217 HOH HOH . C 3 HOH A 147 547 97 HOH HOH . C 3 HOH A 148 548 200 HOH HOH . C 3 HOH A 149 549 208 HOH HOH . C 3 HOH A 150 550 19 HOH HOH . C 3 HOH A 151 551 107 HOH HOH . C 3 HOH A 152 552 129 HOH HOH . C 3 HOH A 153 553 144 HOH HOH . C 3 HOH A 154 554 204 HOH HOH . C 3 HOH A 155 555 80 HOH HOH . C 3 HOH A 156 556 55 HOH HOH . C 3 HOH A 157 557 221 HOH HOH . C 3 HOH A 158 558 229 HOH HOH . C 3 HOH A 159 559 21 HOH HOH . C 3 HOH A 160 560 65 HOH HOH . C 3 HOH A 161 561 155 HOH HOH . C 3 HOH A 162 562 11 HOH HOH . C 3 HOH A 163 563 71 HOH HOH . C 3 HOH A 164 564 156 HOH HOH . C 3 HOH A 165 565 137 HOH HOH . C 3 HOH A 166 566 73 HOH HOH . C 3 HOH A 167 567 110 HOH HOH . C 3 HOH A 168 568 75 HOH HOH . C 3 HOH A 169 569 49 HOH HOH . C 3 HOH A 170 570 153 HOH HOH . C 3 HOH A 171 571 102 HOH HOH . C 3 HOH A 172 572 211 HOH HOH . C 3 HOH A 173 573 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 O0S . . . B 2 12.35 -24.078 -6.049 0.44 40.14 ? N1 O0S 301 A 1 HETATM 2 C C4 O0S . . . B 2 14.642 -22.589 -6.113 0.44 37.78 ? C4 O0S 301 A 1 HETATM 3 C C5 O0S . . . B 2 13.94 -22.382 -7.261 0.44 37.92 ? C5 O0S 301 A 1 HETATM 4 C C6 O0S . . . B 2 12.763 -24.387 -7.336 0.44 39.56 ? C6 O0S 301 A 1 HETATM 5 C C7 O0S . . . B 2 11.61 -25.017 -5.438 0.44 39.53 ? C7 O0S 301 A 1 HETATM 6 C C8 O0S . . . B 2 11.284 -26.206 -6.053 0.44 40.87 ? C8 O0S 301 A 1 HETATM 7 C C10 O0S . . . B 2 13.727 -21.17 -7.78 0.44 37.97 ? C10 O0S 301 A 1 HETATM 8 N N O0S . . . B 2 15.663 -19.185 -5.477 0.44 36.61 ? N O0S 301 A 1 HETATM 9 C C O0S . . . B 2 17.043 -17.772 -4.024 0.44 35.43 ? C O0S 301 A 1 HETATM 10 O O O0S . . . B 2 16.602 -20.015 -3.678 0.44 36.34 ? O O0S 301 A 1 HETATM 11 C C1 O0S . . . B 2 16.446 -19.121 -4.362 0.44 36.28 ? C1 O0S 301 A 1 HETATM 12 C C11 O0S . . . B 2 14.291 -20.12 -7.133 0.44 36.72 ? C11 O0S 301 A 1 HETATM 13 C C2 O0S . . . B 2 15.041 -20.296 -5.996 0.44 37.01 ? C2 O0S 301 A 1 HETATM 14 C C3 O0S . . . B 2 15.202 -21.533 -5.465 0.44 36.97 ? C3 O0S 301 A 1 HETATM 15 C C9 O0S . . . B 2 11.765 -26.399 -7.365 0.44 41.18 ? C9 O0S 301 A 1 HETATM 16 N N2 O0S . . . B 2 12.507 -25.504 -8.025 0.44 40.66 ? N2 O0S 301 A 1 HETATM 17 O O1 O0S . . . B 2 13.537 -23.482 -7.935 0.44 39.84 ? O1 O0S 301 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 17 #