data_5QSK # _model_server_result.job_id qaBJmFlwomPsn9oGD9pVOg _model_server_result.datetime_utc '2024-11-28 08:34:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5QSK # _exptl.entry_id 5QSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 166.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(benzyloxy)acetic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QSK _cell.length_a 99.444 _cell.length_b 99.444 _cell.length_c 99.542 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H10 O3' _chem_comp.formula_weight 166.174 _chem_comp.id O1J _chem_comp.mon_nstd_flag . _chem_comp.name '(benzyloxy)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 O1J doub 237 n y C7 C8 O1J sing 238 n y C6 C5 O1J sing 239 n y C8 C3 O1J doub 240 n y C5 C4 O1J doub 241 n y C3 C4 O1J sing 242 n y C3 C2 O1J sing 243 n n C2 O2 O1J sing 244 n n O2 C1 O1J sing 245 n n C1 C O1J sing 246 n n C O1 O1J doub 247 n n C O O1J sing 248 n n C4 H1 O1J sing 249 n n C5 H2 O1J sing 250 n n C6 H3 O1J sing 251 n n C7 H4 O1J sing 252 n n C8 H5 O1J sing 253 n n O H6 O1J sing 254 n n C1 H7 O1J sing 255 n n C1 H8 O1J sing 256 n n C2 H9 O1J sing 257 n n C2 H10 O1J sing 258 n n # _atom_sites.entry_id 5QSK _atom_sites.fract_transf_matrix[1][1] 0.010056 _atom_sites.fract_transf_matrix[1][2] 0.005806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O1J A 1 301 301 O1J LIG . C 3 HOH A 1 401 182 HOH HOH . C 3 HOH A 2 402 77 HOH HOH . C 3 HOH A 3 403 156 HOH HOH . C 3 HOH A 4 404 157 HOH HOH . C 3 HOH A 5 405 166 HOH HOH . C 3 HOH A 6 406 111 HOH HOH . C 3 HOH A 7 407 106 HOH HOH . C 3 HOH A 8 408 78 HOH HOH . C 3 HOH A 9 409 113 HOH HOH . C 3 HOH A 10 410 231 HOH HOH . C 3 HOH A 11 411 165 HOH HOH . C 3 HOH A 12 412 162 HOH HOH . C 3 HOH A 13 413 88 HOH HOH . C 3 HOH A 14 414 31 HOH HOH . C 3 HOH A 15 415 30 HOH HOH . C 3 HOH A 16 416 133 HOH HOH . C 3 HOH A 17 417 141 HOH HOH . C 3 HOH A 18 418 150 HOH HOH . C 3 HOH A 19 419 122 HOH HOH . C 3 HOH A 20 420 125 HOH HOH . C 3 HOH A 21 421 220 HOH HOH . C 3 HOH A 22 422 67 HOH HOH . C 3 HOH A 23 423 14 HOH HOH . C 3 HOH A 24 424 170 HOH HOH . C 3 HOH A 25 425 98 HOH HOH . C 3 HOH A 26 426 209 HOH HOH . C 3 HOH A 27 427 40 HOH HOH . C 3 HOH A 28 428 27 HOH HOH . C 3 HOH A 29 429 32 HOH HOH . C 3 HOH A 30 430 45 HOH HOH . C 3 HOH A 31 431 89 HOH HOH . C 3 HOH A 32 432 44 HOH HOH . C 3 HOH A 33 433 103 HOH HOH . C 3 HOH A 34 434 22 HOH HOH . C 3 HOH A 35 435 174 HOH HOH . C 3 HOH A 36 436 23 HOH HOH . C 3 HOH A 37 437 149 HOH HOH . C 3 HOH A 38 438 17 HOH HOH . C 3 HOH A 39 439 152 HOH HOH . C 3 HOH A 40 440 76 HOH HOH . C 3 HOH A 41 441 61 HOH HOH . C 3 HOH A 42 442 180 HOH HOH . C 3 HOH A 43 443 167 HOH HOH . C 3 HOH A 44 444 234 HOH HOH . C 3 HOH A 45 445 48 HOH HOH . C 3 HOH A 46 446 164 HOH HOH . C 3 HOH A 47 447 57 HOH HOH . C 3 HOH A 48 448 158 HOH HOH . C 3 HOH A 49 449 194 HOH HOH . C 3 HOH A 50 450 92 HOH HOH . C 3 HOH A 51 451 207 HOH HOH . C 3 HOH A 52 452 210 HOH HOH . C 3 HOH A 53 453 118 HOH HOH . C 3 HOH A 54 454 12 HOH HOH . C 3 HOH A 55 455 168 HOH HOH . C 3 HOH A 56 456 26 HOH HOH . C 3 HOH A 57 457 41 HOH HOH . C 3 HOH A 58 458 5 HOH HOH . C 3 HOH A 59 459 4 HOH HOH . C 3 HOH A 60 460 68 HOH HOH . C 3 HOH A 61 461 228 HOH HOH . C 3 HOH A 62 462 47 HOH HOH . C 3 HOH A 63 463 151 HOH HOH . C 3 HOH A 64 464 6 HOH HOH . C 3 HOH A 65 465 176 HOH HOH . C 3 HOH A 66 466 199 HOH HOH . C 3 HOH A 67 467 50 HOH HOH . C 3 HOH A 68 468 159 HOH HOH . C 3 HOH A 69 469 15 HOH HOH . C 3 HOH A 70 470 191 HOH HOH . C 3 HOH A 71 471 1 HOH HOH . C 3 HOH A 72 472 195 HOH HOH . C 3 HOH A 73 473 11 HOH HOH . C 3 HOH A 74 474 104 HOH HOH . C 3 HOH A 75 475 16 HOH HOH . C 3 HOH A 76 476 42 HOH HOH . C 3 HOH A 77 477 96 HOH HOH . C 3 HOH A 78 478 9 HOH HOH . C 3 HOH A 79 479 3 HOH HOH . C 3 HOH A 80 480 229 HOH HOH . C 3 HOH A 81 481 175 HOH HOH . C 3 HOH A 82 482 13 HOH HOH . C 3 HOH A 83 483 181 HOH HOH . C 3 HOH A 84 484 51 HOH HOH . C 3 HOH A 85 485 35 HOH HOH . C 3 HOH A 86 486 86 HOH HOH . C 3 HOH A 87 487 24 HOH HOH . C 3 HOH A 88 488 64 HOH HOH . C 3 HOH A 89 489 25 HOH HOH . C 3 HOH A 90 490 66 HOH HOH . C 3 HOH A 91 491 124 HOH HOH . C 3 HOH A 92 492 236 HOH HOH . C 3 HOH A 93 493 38 HOH HOH . C 3 HOH A 94 494 36 HOH HOH . C 3 HOH A 95 495 34 HOH HOH . C 3 HOH A 96 496 33 HOH HOH . C 3 HOH A 97 497 163 HOH HOH . C 3 HOH A 98 498 60 HOH HOH . C 3 HOH A 99 499 87 HOH HOH . C 3 HOH A 100 500 37 HOH HOH . C 3 HOH A 101 501 39 HOH HOH . C 3 HOH A 102 502 58 HOH HOH . C 3 HOH A 103 503 54 HOH HOH . C 3 HOH A 104 504 56 HOH HOH . C 3 HOH A 105 505 213 HOH HOH . C 3 HOH A 106 506 20 HOH HOH . C 3 HOH A 107 507 161 HOH HOH . C 3 HOH A 108 508 188 HOH HOH . C 3 HOH A 109 509 62 HOH HOH . C 3 HOH A 110 510 206 HOH HOH . C 3 HOH A 111 511 237 HOH HOH . C 3 HOH A 112 512 142 HOH HOH . C 3 HOH A 113 513 28 HOH HOH . C 3 HOH A 114 514 7 HOH HOH . C 3 HOH A 115 515 222 HOH HOH . C 3 HOH A 116 516 178 HOH HOH . C 3 HOH A 117 517 81 HOH HOH . C 3 HOH A 118 518 184 HOH HOH . C 3 HOH A 119 519 179 HOH HOH . C 3 HOH A 120 520 204 HOH HOH . C 3 HOH A 121 521 2 HOH HOH . C 3 HOH A 122 522 43 HOH HOH . C 3 HOH A 123 523 217 HOH HOH . C 3 HOH A 124 524 83 HOH HOH . C 3 HOH A 125 525 172 HOH HOH . C 3 HOH A 126 526 138 HOH HOH . C 3 HOH A 127 527 85 HOH HOH . C 3 HOH A 128 528 90 HOH HOH . C 3 HOH A 129 529 72 HOH HOH . C 3 HOH A 130 530 29 HOH HOH . C 3 HOH A 131 531 82 HOH HOH . C 3 HOH A 132 532 154 HOH HOH . C 3 HOH A 133 533 117 HOH HOH . C 3 HOH A 134 534 121 HOH HOH . C 3 HOH A 135 535 84 HOH HOH . C 3 HOH A 136 536 224 HOH HOH . C 3 HOH A 137 537 99 HOH HOH . C 3 HOH A 138 538 80 HOH HOH . C 3 HOH A 139 539 238 HOH HOH . C 3 HOH A 140 540 192 HOH HOH . C 3 HOH A 141 541 116 HOH HOH . C 3 HOH A 142 542 135 HOH HOH . C 3 HOH A 143 543 208 HOH HOH . C 3 HOH A 144 544 143 HOH HOH . C 3 HOH A 145 545 186 HOH HOH . C 3 HOH A 146 546 94 HOH HOH . C 3 HOH A 147 547 107 HOH HOH . C 3 HOH A 148 548 200 HOH HOH . C 3 HOH A 149 549 177 HOH HOH . C 3 HOH A 150 550 19 HOH HOH . C 3 HOH A 151 551 187 HOH HOH . C 3 HOH A 152 552 136 HOH HOH . C 3 HOH A 153 553 173 HOH HOH . C 3 HOH A 154 554 129 HOH HOH . C 3 HOH A 155 555 144 HOH HOH . C 3 HOH A 156 556 21 HOH HOH . C 3 HOH A 157 557 137 HOH HOH . C 3 HOH A 158 558 65 HOH HOH . C 3 HOH A 159 559 55 HOH HOH . C 3 HOH A 160 560 71 HOH HOH . C 3 HOH A 161 561 110 HOH HOH . C 3 HOH A 162 562 73 HOH HOH . C 3 HOH A 163 563 49 HOH HOH . C 3 HOH A 164 564 75 HOH HOH . C 3 HOH A 165 565 153 HOH HOH . C 3 HOH A 166 566 102 HOH HOH . C 3 HOH A 167 567 211 HOH HOH . C 3 HOH A 168 568 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 O1J . . . B 2 5.911 -13.512 -4.707 0.5 25.76 ? C4 O1J 301 A 1 HETATM 2 C C5 O1J . . . B 2 6.886 -14.453 -4.989 0.5 25.82 ? C5 O1J 301 A 1 HETATM 3 C C6 O1J . . . B 2 8.151 -14.043 -5.322 0.5 25.18 ? C6 O1J 301 A 1 HETATM 4 C C7 O1J . . . B 2 8.441 -12.698 -5.374 0.5 24.6 ? C7 O1J 301 A 1 HETATM 5 C C8 O1J . . . B 2 7.492 -11.77 -5.096 0.5 26.07 ? C8 O1J 301 A 1 HETATM 6 C C O1J . . . B 2 6.303 -9.917 -1.635 0.5 33.23 ? C O1J 301 A 1 HETATM 7 O O O1J . . . B 2 6.344 -8.9 -0.887 0.5 32.84 -1 O O1J 301 A 1 HETATM 8 C C1 O1J . . . B 2 5.824 -9.64 -3.083 0.5 33.17 ? C1 O1J 301 A 1 HETATM 9 C C2 O1J . . . B 2 5.135 -11.14 -4.672 0.5 31.39 ? C2 O1J 301 A 1 HETATM 10 C C3 O1J . . . B 2 6.213 -12.17 -4.781 0.5 27.56 ? C3 O1J 301 A 1 HETATM 11 O O1 O1J . . . B 2 6.571 -11.103 -1.37 0.5 35.55 ? O1 O1J 301 A 1 HETATM 12 O O2 O1J . . . B 2 5.037 -10.742 -3.377 0.5 32.57 ? O2 O1J 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #