data_5QSL # _model_server_result.job_id 5yfSqW1vW5a-Uy6ipUrKyA _model_server_result.datetime_utc '2024-11-05 14:34:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5QSL # _exptl.entry_id 5QSL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5QSL _cell.length_a 59.902 _cell.length_b 59.902 _cell.length_c 109.696 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 100 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A SG CYS 83 A CYS 122 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc3 A SG CYS 83 A CYS 122 1_555 F CD CD . A CD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc4 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc5 A OE1 GLU 128 A GLU 167 1_555 B CD CD . A CD 301 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc6 A OE1 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc7 A OE2 GLU 128 A GLU 167 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc8 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc9 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc10 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc11 A SG CYS 147 A CYS 186 1_555 B CD CD . A CD 301 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc12 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? A ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc13 A SG CYS 147 A CYS 186 1_555 C CD CD . A CD 302 5_655 ? B ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc14 C CD CD . A CD 302 1_555 I O HOH . A HOH 449 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc15 C CD CD . A CD 302 1_555 I O HOH . A HOH 457 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc16 D CD CD . A CD 303 1_555 I O HOH . A HOH 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc17 D CD CD . A CD 303 1_555 I O HOH . A HOH 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc18 E CD CD . A CD 304 1_555 I O HOH . A HOH 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc19 E CD CD . A CD 304 1_555 I O HOH . A HOH 454 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc20 E CD CD . A CD 304 1_555 I O HOH . A HOH 462 5_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc21 F CD CD . A CD 305 1_555 I O HOH . A HOH 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5QSL _atom_sites.fract_transf_matrix[1][1] 0.016694 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016694 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 301 1 CD CD . C 2 CD A 1 302 2 CD CD . D 2 CD A 1 303 3 CD CD . E 2 CD A 1 304 4 CD CD . F 2 CD A 1 305 5 CD CD . G 2 CD A 1 306 6 CD CD . H 3 O2A A 1 307 1 O2A LIG . I 4 HOH A 1 401 79 HOH HOH . I 4 HOH A 2 402 52 HOH HOH . I 4 HOH A 3 403 21 HOH HOH . I 4 HOH A 4 404 60 HOH HOH . I 4 HOH A 5 405 65 HOH HOH . I 4 HOH A 6 406 71 HOH HOH . I 4 HOH A 7 407 41 HOH HOH . I 4 HOH A 8 408 44 HOH HOH . I 4 HOH A 9 409 50 HOH HOH . I 4 HOH A 10 410 1 HOH HOH . I 4 HOH A 11 411 16 HOH HOH . I 4 HOH A 12 412 48 HOH HOH . I 4 HOH A 13 413 1 HOH HOH . I 4 HOH A 14 414 53 HOH HOH . I 4 HOH A 15 415 31 HOH HOH . I 4 HOH A 16 416 75 HOH HOH . I 4 HOH A 17 417 4 HOH HOH . I 4 HOH A 18 418 52 HOH HOH . I 4 HOH A 19 419 24 HOH HOH . I 4 HOH A 20 420 14 HOH HOH . I 4 HOH A 21 421 58 HOH HOH . I 4 HOH A 22 422 54 HOH HOH . I 4 HOH A 23 423 61 HOH HOH . I 4 HOH A 24 424 67 HOH HOH . I 4 HOH A 25 425 18 HOH HOH . I 4 HOH A 26 426 33 HOH HOH . I 4 HOH A 27 427 45 HOH HOH . I 4 HOH A 28 428 6 HOH HOH . I 4 HOH A 29 429 51 HOH HOH . I 4 HOH A 30 430 14 HOH HOH . I 4 HOH A 31 431 8 HOH HOH . I 4 HOH A 32 432 73 HOH HOH . I 4 HOH A 33 433 69 HOH HOH . I 4 HOH A 34 434 57 HOH HOH . I 4 HOH A 35 435 11 HOH HOH . I 4 HOH A 36 436 70 HOH HOH . I 4 HOH A 37 437 47 HOH HOH . I 4 HOH A 38 438 28 HOH HOH . I 4 HOH A 39 439 32 HOH HOH . I 4 HOH A 40 440 55 HOH HOH . I 4 HOH A 41 441 49 HOH HOH . I 4 HOH A 42 442 8 HOH HOH . I 4 HOH A 43 443 2 HOH HOH . I 4 HOH A 44 444 45 HOH HOH . I 4 HOH A 45 445 77 HOH HOH . I 4 HOH A 46 446 19 HOH HOH . I 4 HOH A 47 447 12 HOH HOH . I 4 HOH A 48 448 66 HOH HOH . I 4 HOH A 49 449 4 HOH HOH . I 4 HOH A 50 450 64 HOH HOH . I 4 HOH A 51 451 23 HOH HOH . I 4 HOH A 52 452 46 HOH HOH . I 4 HOH A 53 453 5 HOH HOH . I 4 HOH A 54 454 7 HOH HOH . I 4 HOH A 55 455 56 HOH HOH . I 4 HOH A 56 456 3 HOH HOH . I 4 HOH A 57 457 3 HOH HOH . I 4 HOH A 58 458 18 HOH HOH . I 4 HOH A 59 459 10 HOH HOH . I 4 HOH A 60 460 10 HOH HOH . I 4 HOH A 61 461 30 HOH HOH . I 4 HOH A 62 462 6 HOH HOH . I 4 HOH A 63 463 72 HOH HOH . I 4 HOH A 64 464 59 HOH HOH . I 4 HOH A 65 465 13 HOH HOH . I 4 HOH A 66 466 62 HOH HOH . I 4 HOH A 67 467 17 HOH HOH . I 4 HOH A 68 468 43 HOH HOH . I 4 HOH A 69 469 16 HOH HOH . I 4 HOH A 70 470 78 HOH HOH . I 4 HOH A 71 471 17 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 25.84 _atom_site.Cartn_y 13.077 _atom_site.Cartn_z 11.065 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 305 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #