data_5QST # _model_server_result.job_id LgpNyw0m1BNt-YvLh2G06Q _model_server_result.datetime_utc '2024-12-26 16:02:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 5QST # _exptl.entry_id 5QST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.268 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-N-methyl-N-phenylpyrrolidine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 94.81 _cell.angle_beta 98.61 _cell.angle_gamma 115.22 _cell.entry_id 5QST _cell.length_a 66.598 _cell.length_b 72.046 _cell.length_c 118.412 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QST _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F 1 1 B,G 2 1 C,H 3 1 D,I 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H16 N2 O' _chem_comp.formula_weight 204.268 _chem_comp.id O3A _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-N-methyl-N-phenylpyrrolidine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C8 O3A doub 237 n y C9 C10 O3A sing 238 n y C8 C7 O3A sing 239 n y O1 C2 O3A doub 240 n n C10 C11 O3A doub 241 n y C7 N1 O3A sing 242 n n C7 C12 O3A doub 243 n y C1 N1 O3A sing 244 n n N1 C2 O3A sing 245 n n C2 C3 O3A sing 246 n n C11 C12 O3A sing 247 n y C3 C4 O3A sing 248 n n C3 C6 O3A sing 249 n n C4 C5 O3A sing 250 n n C5 N2 O3A sing 251 n n N2 C6 O3A sing 252 n n C4 H1 O3A sing 253 n n C4 H2 O3A sing 254 n n C5 H3 O3A sing 255 n n C5 H4 O3A sing 256 n n C6 H5 O3A sing 257 n n C6 H6 O3A sing 258 n n C8 H7 O3A sing 259 n n C10 H8 O3A sing 260 n n C1 H9 O3A sing 261 n n C1 H10 O3A sing 262 n n C1 H11 O3A sing 263 n n C11 H12 O3A sing 264 n n C12 H13 O3A sing 265 n n C3 H14 O3A sing 266 n n C9 H15 O3A sing 267 n n N2 H16 O3A sing 268 n n # _atom_sites.entry_id 5QST _atom_sites.fract_transf_matrix[1][1] 0.015015 _atom_sites.fract_transf_matrix[1][2] 0.007071 _atom_sites.fract_transf_matrix[1][3] 0.003489 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015342 _atom_sites.fract_transf_matrix[2][3] 0.002569 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 O3A C 1 501 501 O3A LIG . F 3 HOH C 1 601 175 HOH HOH . F 3 HOH C 2 602 104 HOH HOH . F 3 HOH C 3 603 36 HOH HOH . F 3 HOH C 4 604 101 HOH HOH . F 3 HOH C 5 605 35 HOH HOH . F 3 HOH C 6 606 42 HOH HOH . F 3 HOH C 7 607 176 HOH HOH . F 3 HOH C 8 608 173 HOH HOH . F 3 HOH C 9 609 33 HOH HOH . F 3 HOH C 10 610 134 HOH HOH . F 3 HOH C 11 611 177 HOH HOH . F 3 HOH C 12 612 91 HOH HOH . F 3 HOH C 13 613 146 HOH HOH . F 3 HOH C 14 614 61 HOH HOH . F 3 HOH C 15 615 129 HOH HOH . F 3 HOH C 16 616 93 HOH HOH . F 3 HOH C 17 617 97 HOH HOH . F 3 HOH C 18 618 131 HOH HOH . F 3 HOH C 19 619 59 HOH HOH . F 3 HOH C 20 620 121 HOH HOH . F 3 HOH C 21 621 82 HOH HOH . F 3 HOH C 22 622 54 HOH HOH . F 3 HOH C 23 623 102 HOH HOH . F 3 HOH C 24 624 68 HOH HOH . F 3 HOH C 25 625 5 HOH HOH . F 3 HOH C 26 626 11 HOH HOH . F 3 HOH C 27 627 90 HOH HOH . F 3 HOH C 28 628 45 HOH HOH . F 3 HOH C 29 629 200 HOH HOH . F 3 HOH C 30 630 93 HOH HOH . F 3 HOH C 31 631 84 HOH HOH . F 3 HOH C 32 632 73 HOH HOH . F 3 HOH C 33 633 18 HOH HOH . F 3 HOH C 34 634 155 HOH HOH . F 3 HOH C 35 635 77 HOH HOH . F 3 HOH C 36 636 23 HOH HOH . F 3 HOH C 37 637 14 HOH HOH . F 3 HOH C 38 638 150 HOH HOH . F 3 HOH C 39 639 28 HOH HOH . F 3 HOH C 40 640 308 HOH HOH . F 3 HOH C 41 641 12 HOH HOH . G 3 HOH A 1 501 103 HOH HOH . G 3 HOH A 2 502 95 HOH HOH . G 3 HOH A 3 503 76 HOH HOH . G 3 HOH A 4 504 230 HOH HOH . G 3 HOH A 5 505 99 HOH HOH . G 3 HOH A 6 506 88 HOH HOH . G 3 HOH A 7 507 32 HOH HOH . G 3 HOH A 8 508 25 HOH HOH . G 3 HOH A 9 509 69 HOH HOH . G 3 HOH A 10 510 100 HOH HOH . G 3 HOH A 11 511 88 HOH HOH . G 3 HOH A 12 512 174 HOH HOH . G 3 HOH A 13 513 70 HOH HOH . G 3 HOH A 14 514 114 HOH HOH . G 3 HOH A 15 515 21 HOH HOH . G 3 HOH A 16 516 16 HOH HOH . G 3 HOH A 17 517 18 HOH HOH . G 3 HOH A 18 518 78 HOH HOH . G 3 HOH A 19 519 153 HOH HOH . G 3 HOH A 20 520 98 HOH HOH . G 3 HOH A 21 521 2 HOH HOH . G 3 HOH A 22 522 7 HOH HOH . G 3 HOH A 23 523 89 HOH HOH . G 3 HOH A 24 524 106 HOH HOH . G 3 HOH A 25 525 168 HOH HOH . G 3 HOH A 26 526 19 HOH HOH . G 3 HOH A 27 527 148 HOH HOH . G 3 HOH A 28 528 111 HOH HOH . G 3 HOH A 29 529 66 HOH HOH . G 3 HOH A 30 530 143 HOH HOH . G 3 HOH A 31 531 58 HOH HOH . G 3 HOH A 32 532 112 HOH HOH . G 3 HOH A 33 533 79 HOH HOH . G 3 HOH A 34 534 107 HOH HOH . G 3 HOH A 35 535 67 HOH HOH . G 3 HOH A 36 536 171 HOH HOH . G 3 HOH A 37 537 184 HOH HOH . G 3 HOH A 38 538 80 HOH HOH . H 3 HOH B 1 501 14 HOH HOH . H 3 HOH B 2 502 30 HOH HOH . H 3 HOH B 3 503 120 HOH HOH . H 3 HOH B 4 504 257 HOH HOH . H 3 HOH B 5 505 20 HOH HOH . H 3 HOH B 6 506 152 HOH HOH . H 3 HOH B 7 507 269 HOH HOH . H 3 HOH B 8 508 163 HOH HOH . H 3 HOH B 9 509 43 HOH HOH . H 3 HOH B 10 510 57 HOH HOH . H 3 HOH B 11 511 63 HOH HOH . H 3 HOH B 12 512 47 HOH HOH . H 3 HOH B 13 513 176 HOH HOH . H 3 HOH B 14 514 156 HOH HOH . H 3 HOH B 15 515 98 HOH HOH . H 3 HOH B 16 516 113 HOH HOH . H 3 HOH B 17 517 24 HOH HOH . H 3 HOH B 18 518 124 HOH HOH . H 3 HOH B 19 519 22 HOH HOH . H 3 HOH B 20 520 169 HOH HOH . H 3 HOH B 21 521 13 HOH HOH . H 3 HOH B 22 522 26 HOH HOH . H 3 HOH B 23 523 146 HOH HOH . H 3 HOH B 24 524 166 HOH HOH . H 3 HOH B 25 525 136 HOH HOH . H 3 HOH B 26 526 71 HOH HOH . I 3 HOH D 1 501 132 HOH HOH . I 3 HOH D 2 502 96 HOH HOH . I 3 HOH D 3 503 86 HOH HOH . I 3 HOH D 4 504 154 HOH HOH . I 3 HOH D 5 505 116 HOH HOH . I 3 HOH D 6 506 15 HOH HOH . I 3 HOH D 7 507 34 HOH HOH . I 3 HOH D 8 508 49 HOH HOH . I 3 HOH D 9 509 74 HOH HOH . I 3 HOH D 10 510 37 HOH HOH . I 3 HOH D 11 511 139 HOH HOH . I 3 HOH D 12 512 44 HOH HOH . I 3 HOH D 13 513 8 HOH HOH . I 3 HOH D 14 514 172 HOH HOH . I 3 HOH D 15 515 55 HOH HOH . I 3 HOH D 16 516 105 HOH HOH . I 3 HOH D 17 517 109 HOH HOH . I 3 HOH D 18 518 38 HOH HOH . I 3 HOH D 19 519 137 HOH HOH . I 3 HOH D 20 520 110 HOH HOH . I 3 HOH D 21 521 144 HOH HOH . I 3 HOH D 22 522 9 HOH HOH . I 3 HOH D 23 523 64 HOH HOH . I 3 HOH D 24 524 84 HOH HOH . I 3 HOH D 25 525 29 HOH HOH . I 3 HOH D 26 526 27 HOH HOH . I 3 HOH D 27 527 70 HOH HOH . I 3 HOH D 28 528 83 HOH HOH . I 3 HOH D 29 529 140 HOH HOH . I 3 HOH D 30 530 155 HOH HOH . I 3 HOH D 31 531 51 HOH HOH . I 3 HOH D 32 532 62 HOH HOH . I 3 HOH D 33 533 79 HOH HOH . I 3 HOH D 34 534 6 HOH HOH . I 3 HOH D 35 535 1 HOH HOH . I 3 HOH D 36 536 39 HOH HOH . I 3 HOH D 37 537 117 HOH HOH . I 3 HOH D 38 538 56 HOH HOH . I 3 HOH D 39 539 135 HOH HOH . I 3 HOH D 40 540 2 HOH HOH . I 3 HOH D 41 541 13 HOH HOH . I 3 HOH D 42 542 31 HOH HOH . I 3 HOH D 43 543 50 HOH HOH . I 3 HOH D 44 544 87 HOH HOH . I 3 HOH D 45 545 133 HOH HOH . I 3 HOH D 46 546 123 HOH HOH . I 3 HOH D 47 547 160 HOH HOH . I 3 HOH D 48 548 227 HOH HOH . I 3 HOH D 49 549 53 HOH HOH . I 3 HOH D 50 550 122 HOH HOH . I 3 HOH D 51 551 25 HOH HOH . I 3 HOH D 52 552 158 HOH HOH . I 3 HOH D 53 553 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 O3A . . . E 2 -97.725 -40.881 -89.717 0.56 87.57 ? N1 O3A 501 C 1 HETATM 2 C C4 O3A . . . E 2 -97.186 -44.189 -87.862 0.56 89.67 ? C4 O3A 501 C 1 HETATM 3 C C5 O3A . . . E 2 -95.688 -44.389 -87.67 0.56 89.61 ? C5 O3A 501 C 1 HETATM 4 C C6 O3A . . . E 2 -96.245 -42.191 -87.074 0.56 89.89 ? C6 O3A 501 C 1 HETATM 5 C C7 O3A . . . E 2 -96.917 -39.711 -89.826 0.56 85.45 ? C7 O3A 501 C 1 HETATM 6 C C8 O3A . . . E 2 -96.05 -39.544 -90.916 0.56 83.93 ? C8 O3A 501 C 1 HETATM 7 C C10 O3A . . . E 2 -95.278 -37.465 -90.007 0.56 84.03 ? C10 O3A 501 C 1 HETATM 8 C C1 O3A . . . E 2 -99.191 -40.681 -89.816 0.56 87.08 ? C1 O3A 501 C 1 HETATM 9 C C11 O3A . . . E 2 -96.114 -37.616 -88.924 0.56 84.04 ? C11 O3A 501 C 1 HETATM 10 C C12 O3A . . . E 2 -96.925 -38.732 -88.817 0.56 83.73 ? C12 O3A 501 C 1 HETATM 11 C C2 O3A . . . E 2 -97.209 -42.125 -89.459 0.56 90.99 ? C2 O3A 501 C 1 HETATM 12 C C3 O3A . . . E 2 -97.341 -42.665 -88.025 0.56 90.11 ? C3 O3A 501 C 1 HETATM 13 C C9 O3A . . . E 2 -95.248 -38.42 -90.999 0.56 83.78 ? C9 O3A 501 C 1 HETATM 14 N N2 O3A . . . E 2 -95.112 -43.073 -87.368 0.56 89.87 ? N2 O3A 501 C 1 HETATM 15 O O1 O3A . . . E 2 -96.558 -42.703 -90.317 0.56 94.69 ? O1 O3A 501 C 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 15 #